Sequence of DPV Tomato leaf curl Taiwan virus

Tomato leaf curl Taiwan virus isolate LJC14-2 segment DNA A, complete sequence.

ACC No: DQ866128

Dated: 2006-09-19 | Length: 2743 | CRC: -446648403

                
ID   DQ866128; SV 1; linear; genomic DNA; STD; VRL; 2743 BP.
XX
AC   DQ866128;
XX
DT   19-SEP-2006 (Rel. 89, Created)
DT   19-SEP-2006 (Rel. 89, Last updated, Version 1)
XX
DE   Tomato leaf curl Taiwan virus isolate LJC14-2 segment DNA A, complete
DE   sequence.
XX
KW   .
XX
OS   Tomato leaf curl Taiwan virus
OC   Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-2743
RA   Tsai W.S., Green S.K., Shih S.L.;
RT   "Molecular Identification of Taiwan Ageratum-Infecting Begomoviruses";
RL   Unpublished.
XX
RN   [2]
RP   1-2743
RA   Tsai W.S., Green S.K., Shih S.L.;
RT   ;
RL   Submitted (24-JUL-2006) to the EMBL/GenBank/DDBJ databases.
RL   Virology Unit, AVRDC-The World Vegetable Center, PO BOX 42, Shanhua,
RL   Tainan, Taiwan 74199, ROC
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .2743
FT                   /organism="Tomato leaf curl Taiwan virus"
FT                   /segment="DNA A"
FT                   /specific_host="tomato"
FT                   /isolate="LJC14-2"
FT                   /mol_type="genomic DNA"
FT                   /country="Taiwan:Chiayi"
FT                   /db_xref="taxon:196093"
FT   gene            132. .473
FT                   /gene="AV2"
FT   CDS             132. .473
FT                   /codon_start=1
FT                   /gene="AV2"
FT                   /product="AV2"
FT                   /protein_id="ABI63415.1"
FT                   /translation="MWDPLLNDFPESVHGLRCMLAIKYLHLVENTYSPDTLGYDLIRDL
FT                   ILVIRARDYVEATRRYSHFHSRFQGSSPSELRQPIWQPCSCPHCPRHKQKEFMGESALV
FT                   QKAQDVQDV"
FT   gene            292. .1065
FT                   /gene="AV1"
FT   CDS             292. .1065
FT                   /codon_start=1
FT                   /gene="AV1"
FT                   /product="AV1"
FT                   /note="capsid protein"
FT                   /protein_id="ABI63416.1"
FT                   /translation="MSKRPADIVISTPASKVRRRLNFASPYGNRVAAPTVLVTNKKSSW
FT                   VNRPLFRKPKMYRMYKSPDVPRGCEGPCKVQSFEQRHDISHVGKVLCVSDVTRGNGLTH
FT                   RVGKRFCVKSIYVLGKIWMDENIKTKNHTNTVMFFLVRDRRPYGTPQDFGQIFNMYDNE
FT                   PSTATVKNDNRDRFQVLRRFQATVTGGQYACKEQALVRKFMKINNHVTYNHQEAAKYDN
FT                   HTENALLLYMACTHASNPVYATLKIRIYFYDSVQN"
FT   gene            complement(1062. .1466)
FT                   /gene="AC3"
FT   CDS             complement(1062. .1466)
FT                   /codon_start=1
FT                   /gene="AC3"
FT                   /product="AC3"
FT                   /protein_id="ABI63417.1"
FT                   /translation="MDSRTGELITAAQAENGVYTWTINNPLYFKITQHNQRPFLRNHDV
FT                   TTIQVQFNYNLRKALGIHQCFIICQIWTRLQPRTSHFLRVFKYQCMKYLDNLGVISLNN
FT                   VFRAMRHVLYNVIEGTIDAQFSHIIKCKIY"
FT   gene            complement(1207. .1614)
FT                   /gene="AC2"
FT   CDS             complement(1207. .1614)
FT                   /codon_start=1
FT                   /gene="AC2"
FT                   /product="AC2"
FT                   /protein_id="ABI63418.1"
FT                   /translation="MRNSSPSPSHSTHVPIKVQHKIAKKRPIRRRRVDLPCGCSYYLGI
FT                   NCASHGFSHRGTHHCSSSREWRVYLDNQQSPLFQNNTTQPETISTEPRRNDNTSSIQLQ
FT                   PEESVGNTPVFYNLPDLDSFTTSDLAFLEGI"
FT   gene            complement(1514. .2599)
FT                   /gene="AC1"
FT   CDS             complement(1514. .2599)
FT                   /codon_start=1
FT                   /gene="AC1"
FT                   /product="AC1"
FT                   /protein_id="ABI63419.1"
FT                   /translation="MPRAGRFSIKAKNYFLTYPDCSLTKEEALAQIQQLSTPTNKKYIK
FT                   ICRELHQNGNPHLHVLIQFEGKYNCTNQRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYI
FT                   NKDGDTLEWGEFQIDGRSARGGQQSANDTAAKALNSGSAEAALAIIREELPKDFIFQYH
FT                   NIKNNLDRIFAPPLEVFISPFSSSFDQVPEELVKWVAENVRDSAARPWRPMSIVVEGES
FT                   RTGKTLWARSLGPHNYLCGHLDLSPRVYSNEAWYNVIDDVDPHYLKHFKEFMGAQRDWQ
FT                   SNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEEKNFALKDWALKNAEFITLTEPLY
FT                   SRANQGPTQNSEEETNSQAEG"
FT   gene            complement(2149. .2442)
FT                   /gene="AC4"
FT   CDS             complement(2185. .2442)
FT                   /codon_start=1
FT                   /gene="AC4"
FT                   /product="AC4"
FT                   /protein_id="ABI63420.1"
FT                   /translation="MGTLISTCLSNSRGSITARISDSSTWYPQPGQLISIQTFRELNQA
FT                   PTSSPISTRMETPSNGESSRSTAEVLEEVSRALTTQPQRL"
XX
SQ   Sequence 2743 BP; 718 A; 548 C; 632 G; 845 T; 0 other;

dq866128 Length: 2743  19-SEP-2006  Type: N  Check: 3633  ..

       1  accggatggc cgcgaatttt ctaagtgggt cctacgcact aatgttggtc
      51  ggccaataga aacgctcctt caaagcttat taacaaaaat acccgttata
     101  aatacttggt ggctaagtta cagtcggtaa aatgtgggat ccacttttaa
     151  atgattttcc ggagtctgta catggtctac ggtgtatgct tgccattaag
     201  tatctacatc ttgtagaaaa tacatattcc ccggatactt tgggttacga
     251  tcttatacgt gatttgattt tagttatccg agctagggat tatgtcgaag
     301  cgacccgccg atatagtcat ttccactccc gcttccaagg ttcgtcgccg
     351  tctgaacttc gccagcccat atggcaaccg tgtagctgcc cccactgtcc
     401  tcgtcacaaa caaaaagagt tcatgggtga atcggccctt gttcagaaag
     451  cccaagatgt acaggatgta taaaagccca gatgttcctc gtggttgtga
     501  aggcccatgt aaggtacagt catttgaaca gcgtcatgat atatcccatg
     551  tgggcaaggt attatgtgtg tccgatgtca cacgtggtaa tgggctgacc
     601  catcgtgttg ggaagaggtt ttgtgttaag tccatttatg tgttgggtaa
     651  gatatggatg gatgagaata tcaagacgaa gaatcacaca aatactgtga
     701  tgttcttctt agtccgtgat agaaggcctt atggtactcc acaagatttc
     751  ggtcagatct ttaatatgta tgataatgag cctagcactg caacggtgaa
     801  gaatgataat agagataggt ttcaagttct ccgtcgattc caggctacgg
     851  tgactggcgg tcagtatgcg tgcaaagaac aagctctagt taggaagttt
     901  atgaaaatca acaaccatgt tacttataat caccaagagg ctgctaaata
     951  cgataaccat acagagaatg ctttgttgtt gtatatggca tgtactcatg
    1001  ccagtaatcc tgtgtatgct actttgaaaa tcagaatcta tttctatgat
    1051  tctgttcaaa attaataaat tttacatttt attatatgtg aaaactgagc
    1101  atcgattgtg ccctctatta cattgtatag tacatgtctc attgctctaa
    1151  atacattgtt taaactaata acgcctaaat tgtctaaata cttcatacat
    1201  tggtacttaa ataccctcaa gaaatgcgag gtccgaggtt gtaaacgagt
    1251  ccaaatctgg caaattataa aacactggtg tattcccaac gctttcctca
    1301  ggttgtagtt gaattgaact tgtattgtcg ttacgtcgtg gttccgtaga
    1351  aatggtctct ggttgtgttg tgttattttg aaatagaggg gattgttgat
    1401  tgtccaggta tacacgccat tctctgcttg agctgcagtg atgagttccc
    1451  ctgtgcgaga atccatgtga tgcgcagtta attccaagat aatacgagca
    1501  cccacaagga agatcaaccc tccgcctgcg aattggtctc ttcttcgcta
    1551  ttttgtgttg gaccttgatt ggcacgtgag tagagtggct cggtgagggt
    1601  gatgaattcc gcattcttta aagcccagtc tttgagtgcg aaattctttt
    1651  cttcgtctaa gtactcttta tatgatgatg ttggccctgg attgcaaagg
    1701  aagattgttg ggataccacc tttaatttga attggtttcc cgtatttggt
    1751  gttgctttgc cagtcccttt gggcccccat gaattcttta aagtgcttta
    1801  gatagtgggg atcgacgtca tcaatgacgt tataccatgc ctcattgctg
    1851  tacactcttg ggcttaggtc aagatgacca cacaagtaat tgtgtgggcc
    1901  tagagacctg gcccaaagtg tcttcccagt acgactctca ccctctacaa
    1951  caatactcat gggtctccat ggccgcgcag cggaatccct cacgttctcg
    2001  gcaacccatt ttacaagttc ttctggaact tgatcaaagg aagaagaaaa
    2051  aggagaaata aaaacctcca aaggaggagc aaaaatccta tctaaattat
    2101  ttttaatatt atggtattga aaaataaagt ctttagggag ttcctcccta
    2151  ataatagcca gagcggcttc agcggaacct gagtttagag cctttgcggc
    2201  tgtgtcgtta gcgctctgct gacctcctct agcacttctg ccgtcgatct
    2251  ggaactctcc ccattcgagg gtgtctccat ccttgttgat ataggacttg
    2301  acgtcggagc ttgatttagc tccctgaatg tttggatgga aatgagctga
    2351  cctggttggg gataccaggt cgaagaatcg ctgattcgtg cagttatact
    2401  tcccctcgaa ttggataagc acgtggagat gagggttccc attttggtgc
    2451  agctctctgc agatcttgat gtatttcttg ttggttgggg tggatagttg
    2501  ttgtatctgg gctagtgcct cttctttagt aagggagcaa tctggataag
    2551  tgaggaaata atttttggct ttaatagaaa aacgacctgc tcttggcatt
    2601  ttggatgtcg ttttggtatc ggggggcact caaagtctgt atgaatcggg
    2651  ggaactgggg gacaatttat atgtgccccc taaatggcat tattgtaatt
    2701  acattaattt accaaggggt aaagcggcca tccgtttaat att