Sequence of DPV Beet black scorch virus
Beet black scorch virus isolate CO, complete genome.
ACC No: EF153268
Dated: 2010-09-16 | Length: 3642 | CRC: -1449120691
ID EF153268; SV 1; linear; genomic RNA; STD; VRL; 3642 BP. XX AC EF153268; XX DT 11-MAR-2007 (Rel. 91, Created) DT 16-SEP-2010 (Rel. 106, Last updated, Version 2) XX DE Beet black scorch virus isolate CO, complete genome. XX KW . XX OS Beet black scorch virus OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae; OC Necrovirus. XX RN [1] RP 1-3642 RX PUBMED; 18943682. RA Weiland J.J., Van Winkle D., Edwards M.C., Larson R.L., Shelver W.L., RA Freeman T.P., Liu H.Y.; RT "Characterization of a U.S. Isolate of Beet black scorch virus"; RL Phytopathology 97(10):1245-1254(2007). XX RN [2] RP 1-3642 RA Weiland J., Van Winkle D., Edwards M., Larson R., Shelver W., Freeman T., RA Liu H.-Y.; RT ; RL Submitted (30-NOV-2006) to the EMBL/GenBank/DDBJ databases. RL Sugarbeet Research, USDA-ARS, Northern Crop Science Laboratory, 1307 18th RL St. N, Fargo, ND 58105, USA XX FH Key Location/Qualifiers FH FT source 1. .3642 FT /organism="Beet black scorch virus" FT /isolate="CO" FT /mol_type="genomic RNA" FT /country="USA:Colorado" FT /db_xref="taxon:196375" FT CDS 34. .2208 FT /codon_start=1 FT /transl_except=(pos:643. .645,aa:OTHER) FT /product="RNA-dependent RNA polymerase" FT /note="p82; ORF2; produced by suppression of translation FT stop codon terminating ORF1" FT /db_xref="GOA:A3R4U6" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013707" FT /db_xref="UniProtKB/TrEMBL:A3R4U6" FT /protein_id="ABO18577.1" FT /translation="MDSIPYVILRILDFVFRSIFFPSLLFIINHNTTILWACACAYGFY FT RAFRLIFKIKVEVHPATRAVFNDMVTRFQQESMFSPNDEVPEGIPIHEDVDLVSDPTHK FT DIKRVRASRRVSYAVRVAHVAKSKVGLLANTKANELVYSRLCRDEMVIHGVRPSHIAHA FT VPLAVAACFIPLDSDFLAASIRNCEGMEERRAVLGPSYGKXGGLLCTSGFTTPTWRGNP FT EGLLVKRGPPLAKPRKLYRFSGFGTHIRYGVHDHSLGNVRRGLVERLFMVETKDGLAPT FT PKPTPGVYAKLSRFHDLVSANLTSTTRLTYEQFLGFYSGRKLERYQQAVESLAIRPIGV FT QDAWLSTFVKAEKLNISAKPDPAPRVIQPRSPRYNVEVGRFLRHAEEHLFDAIDRVYGG FT RTVFKGLNADQAGMEMQAMWQEFDNPVGIGMDASRFDQHVSKEALEFEHKIWLSMYHGA FT DRKILSKLLGMQIHNRGLARCPDGEIRYTVEGCRMSGDINTSSGNCYIMCASVHNYCSR FT LGVMRFRLANNGDDCMLVVEAKDEARVRQGLIEYYRELGFTMKVEPTVYELEHLEFCQT FT RPVLVNGAYRMVRNLHQGMSKDLHSLHDLGSRKAAEAWVSAVGSGGRVMNDGVPVLKSF FT FMQFPLSSGPKTKSDMSIALQEDWKYKFNRTGCFKNLTPTPQSRYSFWRAFGVLPDEQI FT ALENGFSRLSFDKLDQDVQEEVSLLQFSGA" FT CDS 34. .645 FT /codon_start=1 FT /product="p23" FT /note="ORF1" FT /db_xref="GOA:A3R4U7" FT /db_xref="InterPro:IPR013707" FT /db_xref="UniProtKB/TrEMBL:A3R4U7" FT /protein_id="ABO18576.1" FT /translation="MDSIPYVILRILDFVFRSIFFPSLLFIINHNTTILWACACAYGFY FT RAFRLIFKIKVEVHPATRAVFNDMVTRFQQESMFSPNDEVPEGIPIHEDVDLVSDPTHK FT DIKRVRASRRVSYAVRVAHVAKSKVGLLANTKANELVYSRLCRDEMVIHGVRPSHIAHA FT VPLAVAACFIPLDSDFLAASIRNCEGMEERRAVLGPSYGK" FT CDS 2126. .2242 FT /codon_start=1 FT /product="p4" FT /note="ORF3" FT /db_xref="UniProtKB/TrEMBL:A3R4U8" FT /protein_id="ABO18578.1" FT /translation="MDFLVLALTSWTRMSRRRLASSSSLGHENLTTFHGTTA" FT CDS 2226. .2417 FT /codon_start=1 FT /product="p7a" FT /note="ORF4" FT /db_xref="UniProtKB/TrEMBL:A3R4U9" FT /protein_id="ABO18579.1" FT /translation="MEQQRSEQRRERRVRSKSEDRKSMSDVGQSAVNREADIKKDMGPS FT VSMTVVGENVEFTQHFHF" FT CDS 2419. .2616 FT /codon_start=1 FT /product="p7b" FT /note="ORF5" FT /db_xref="UniProtKB/TrEMBL:A3R4V0" FT /protein_id="ABO18580.1" FT /translation="MSTIYVVQEESSGFLVWALVVAIVCIIGLLSYTPPERLNHSYHEN FT NQKTQYITIGGASTSKVSTN" FT CDS 2432. .2575 FT /codon_start=1 FT /product="p5b" FT /note="ORF6" FT /db_xref="UniProtKB/TrEMBL:A3R4V1" FT /protein_id="ABO18581.1" FT /translation="MLCRRSPLGSSCGHWLLQLCASLDSYHTPHLKDLTTLITKTIRRR FT NT" FT CDS 2645. .3343 FT /codon_start=1 FT /product="p25" FT /note="capsid protein; ORF7" FT /db_xref="GOA:A3R4V2" FT /db_xref="InterPro:IPR000937" FT /db_xref="UniProtKB/TrEMBL:A3R4V2" FT /protein_id="ABO18582.1" FT /translation="MAPKRNKGSKKTRMSDETVRAPAAGGVIQRTPGIPPRIRSTTIGT FT RVTNTELLAGINVAAAGAFSVVGAGLFPSNLGWLNGIASNYSKFRWLAIKLIYVPIVPT FT TTAGAMTMALSYDPADATPTSFQQVQQMYNSITAPVWAGFDGATVQLLGERPTTGAVCI FT DVDVNRFGFTWYRYATLAAITALTANDRNLYIPSVCNVATSGGSAATNVGNLMIKYSIE FT LIEPIPAAIN" FT CDS 2691. .2975 FT /codon_start=1 FT /product="p10" FT /note="ORF8" FT /db_xref="UniProtKB/TrEMBL:A3R4V3" FT /protein_id="ABO18583.1" FT /translation="MRQCGLLLLVASYNVHLAFLLVLGPPLLVRVSPTLSCSQELMLLP FT QGPSQSLVLVCSPATLAGLMGLLLTIANLDGLLSSSSMFPSSLLRLLGQ" XX SQ Sequence 3642 BP; 888 A; 850 C; 952 G; 952 T; 0 other; ef153268 Length: 3642 16-SEP-2010 Type: N Check: 3488 .. 1 gaaacctaac cagtttctcg ttgatcagcg atcatggatt caatcccgta 51 tgtgatcctg cgcatactcg attttgtctt ccgctccatc ttctttccat 101 ccctactctt catcatcaat cacaacacca ctatcctatg ggcatgtgct 151 tgtgcctatg ggttttaccg tgcatttcgc cttatcttca agataaaggt 201 ggaggtacac ccagccaccc gagccgtctt caacgacatg gtcacccgtt 251 tccagcagga gagtatgttc tcacctaatg acgaagtgcc ggagggtatc 301 ccgatacacg aggatgttga ccttgttagc gaccccacac acaaagatat 351 taagcgggtc cgtgctagca ggcgagtctc atatgccgtg agggttgccc 401 atgtagccaa gtcgaaggtg ggactactcg ccaataccaa ggcgaatgag 451 ctggtttact cccgcctatg cagagatgag atggttatcc acggtgtacg 501 cccatcgcac attgcacacg cagtgccgct agctgtcgcg gcctgcttca 551 taccactaga cagtgatttc ctcgcagcct ctatcaggaa ttgcgagggg 601 atggaggagc ggagggccgt gttggggccc tcatatggaa aatagggagg 651 cctactctgc accagcgggt ttaccacgcc aacttggcgt ggtaatccag 701 agggtttgct ggtgaagaga ggaccacctc tggctaaacc taggaaactg 751 taccgttttt ctgggtttgg gactcatata cggtacggag tgcacgacca 801 ctcattgggc aatgttcgga ggggacttgt tgagcggcta ttcatggtgg 851 aaaccaagga tggcttagct ccaacaccaa agcccacccc tggcgtgtac 901 gccaagttat cccggtttca cgacctagtt agtgccaatc taacctcgac 951 caccagatta acatacgagc aatttctcgg attttattct ggtcgcaaat 1001 tggagaggta ccaacaggct gtggagtcgt tagcaatccg cccaataggg 1051 gtacaggatg cttggcttag cacgtttgtt aaggctgaaa aattaaacat 1101 ctcagctaaa cccgatccgg cacctagggt cattcagcct aggtcgccga 1151 ggtataatgt ggaggttgga cggttcctca gacatgctga ggaacatttg 1201 ttcgacgcca ttgaccgtgt gtatggtggg cggacggtgt tcaaggggtt 1251 gaatgccgat caggctggca tggagatgca agccatgtgg caagagttcg 1301 acaatcctgt aggcatcggt atggatgcgt ctcgtttcga ccaacacgtc 1351 tctaaggagg cgttggagtt cgaacacaag atttggctgt ccatgtatca 1401 tggggctgac aggaaaatct tatcgaagct gttggggatg caaatccaca 1451 accgcggtct tgctagatgc cctgatgggg aaatcaggta cacggtagag 1501 gggtgtcgta tgtctggaga tattaacaca tcttccggaa actgctatat 1551 tatgtgtgct tcagtgcaca actattgcag ccggttgggt gttatgagat 1601 ttagacttgc caacaatggt gatgattgca tgcttgtggt cgaagccaag 1651 gatgaggcac gtgtgaggca ggggctcatc gagtattaca gggagttagg 1701 tttcacaatg aaagtggagc ccactgtcta tgaactcgag cacttggagt 1751 tttgccaaac gcgcccagtc cttgttaatg gggcttatcg tatggtgcgc 1801 aatcttcatc aaggtatgtc taaggatcta cactccttgc atgatcttgg 1851 tagtaggaaa gctgctgaag cttgggtttc agcagttggc agcggaggcc 1901 gcgtaatgaa tgatggggta ccagtgctca aatcattctt tatgcagttt 1951 cctctgtcct ctggtcctaa aaccaagtcc gatatgagta tagcgttgca 2001 ggaagattgg aaatacaaat tcaatcggac tgggtgtttc aagaatttga 2051 cacccactcc acaatcccgc tactcatttt ggcgtgcgtt cggagtgttg 2101 ccagatgaac agattgctct agagaatgga ttttctcgtc ttagctttga 2151 caagctggac caggatgtcc aggaggaggt tagcctcctc cagttctctg 2201 gggcatgaaa acctaaccac ttttcatgga acaacagcgt agcgaacaac 2251 gtcgtgagcg tagagtgaga agcaaatcgg aggacaggaa gtctatgtct 2301 gatgttgggc aatctgctgt caacagggaa gcagatatca agaaagacat 2351 gggtccatcg gtttctatga cggtggtggg ggagaatgtg gagtttacac 2401 aacatttcca cttctgaaat gagcaccatt tatgttgtgc aggaggagtc 2451 ctctgggttc ctcgtgtggg cattggttgt tgcaattgtg tgcatcattg 2501 gactcttatc atacacccca cctgaaagac ttaaccactc ttatcacgaa 2551 aacaatcaga agacgcaata cataactatt ggaggagcat ccactagtaa 2601 agtttccacg aactgaattt actgctttct agtatagtta ataaatggca 2651 cctaaacgta ataaaggaag caagaagacc cgcatgtccg atgagacagt 2701 gcgggctcct gctgctggtg gcgtcataca acgtacacct ggcattcctc 2751 ctcgtattag gtccaccact attggtacgc gtgtcaccaa cactgagctg 2801 ctcgcaggaa ttaatgttgc tgccgcaggg gccttctcag tcgttggtgc 2851 tggtctgttc cccagcaacc ttggctggct taatgggatt gcttctaact 2901 atagcaaatt tagatggctt gctatcaagc tcatctatgt tcccatcgtc 2951 cctactacga ctgctggggc aatgaccatg gctttatctt atgatcccgc 3001 tgatgctaca ccaactagtt ttcaacaggt gcaacagatg tataacagca 3051 tcacagcgcc tgtctgggct ggttttgatg gagctactgt tcagcttctt 3101 ggggagcgtc cgacaactgg ggctgtgtgc attgacgtgg atgtgaatcg 3151 gtttggattc acatggtaca gatatgccac gcttgctgcc attaccgcac 3201 tcactgcaaa tgataggaat ctttacattc ccagtgtttg caatgtggct 3251 acttctggcg gctccgcagc taccaatgtt ggtaatttga tgataaagta 3301 tagtattgag ctcattgagc caatacccgc tgccatcaat tagatcccac 3351 atcctggtgt ggttaatcca gtgaaaaata ttaggaaatc cttgggattc 3401 acgccccgag ggggattgct tgcatagtgc aggtatgttg agtcacactg 3451 tgaggtattg gtgctgaatc ctggtaaaca ggcttgacag gtttgggtgg 3501 ttccaaaccg atgtattacc caagatactc atggtactcc actagaaaac 3551 actatgcgtg cgcacacggc tggctatgtc ctatcatagc tgggggcccc 3601 ggagtgcgaa accctcttat atacctggtc ttccaggtgc cc