Sequence of DPV Beet black scorch virus
Beet black scorch virus isolate CO, complete genome.
ACC No: EF153268
Dated: 2010-09-16 | Length: 3642 | CRC: -1449120691
ID EF153268; SV 1; linear; genomic RNA; STD; VRL; 3642 BP.
XX
AC EF153268;
XX
DT 11-MAR-2007 (Rel. 91, Created)
DT 16-SEP-2010 (Rel. 106, Last updated, Version 2)
XX
DE Beet black scorch virus isolate CO, complete genome.
XX
KW .
XX
OS Beet black scorch virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae;
OC Necrovirus.
XX
RN [1]
RP 1-3642
RX PUBMED; 18943682.
RA Weiland J.J., Van Winkle D., Edwards M.C., Larson R.L., Shelver W.L.,
RA Freeman T.P., Liu H.Y.;
RT "Characterization of a U.S. Isolate of Beet black scorch virus";
RL Phytopathology 97(10):1245-1254(2007).
XX
RN [2]
RP 1-3642
RA Weiland J., Van Winkle D., Edwards M., Larson R., Shelver W., Freeman T.,
RA Liu H.-Y.;
RT ;
RL Submitted (30-NOV-2006) to the EMBL/GenBank/DDBJ databases.
RL Sugarbeet Research, USDA-ARS, Northern Crop Science Laboratory, 1307 18th
RL St. N, Fargo, ND 58105, USA
XX
FH Key Location/Qualifiers
FH
FT source 1. .3642
FT /organism="Beet black scorch virus"
FT /isolate="CO"
FT /mol_type="genomic RNA"
FT /country="USA:Colorado"
FT /db_xref="taxon:196375"
FT CDS 34. .2208
FT /codon_start=1
FT /transl_except=(pos:643. .645,aa:OTHER)
FT /product="RNA-dependent RNA polymerase"
FT /note="p82; ORF2; produced by suppression of translation
FT stop codon terminating ORF1"
FT /db_xref="GOA:A3R4U6"
FT /db_xref="InterPro:IPR002166"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="InterPro:IPR013707"
FT /db_xref="UniProtKB/TrEMBL:A3R4U6"
FT /protein_id="ABO18577.1"
FT /translation="MDSIPYVILRILDFVFRSIFFPSLLFIINHNTTILWACACAYGFY
FT RAFRLIFKIKVEVHPATRAVFNDMVTRFQQESMFSPNDEVPEGIPIHEDVDLVSDPTHK
FT DIKRVRASRRVSYAVRVAHVAKSKVGLLANTKANELVYSRLCRDEMVIHGVRPSHIAHA
FT VPLAVAACFIPLDSDFLAASIRNCEGMEERRAVLGPSYGKXGGLLCTSGFTTPTWRGNP
FT EGLLVKRGPPLAKPRKLYRFSGFGTHIRYGVHDHSLGNVRRGLVERLFMVETKDGLAPT
FT PKPTPGVYAKLSRFHDLVSANLTSTTRLTYEQFLGFYSGRKLERYQQAVESLAIRPIGV
FT QDAWLSTFVKAEKLNISAKPDPAPRVIQPRSPRYNVEVGRFLRHAEEHLFDAIDRVYGG
FT RTVFKGLNADQAGMEMQAMWQEFDNPVGIGMDASRFDQHVSKEALEFEHKIWLSMYHGA
FT DRKILSKLLGMQIHNRGLARCPDGEIRYTVEGCRMSGDINTSSGNCYIMCASVHNYCSR
FT LGVMRFRLANNGDDCMLVVEAKDEARVRQGLIEYYRELGFTMKVEPTVYELEHLEFCQT
FT RPVLVNGAYRMVRNLHQGMSKDLHSLHDLGSRKAAEAWVSAVGSGGRVMNDGVPVLKSF
FT FMQFPLSSGPKTKSDMSIALQEDWKYKFNRTGCFKNLTPTPQSRYSFWRAFGVLPDEQI
FT ALENGFSRLSFDKLDQDVQEEVSLLQFSGA"
FT CDS 34. .645
FT /codon_start=1
FT /product="p23"
FT /note="ORF1"
FT /db_xref="GOA:A3R4U7"
FT /db_xref="InterPro:IPR013707"
FT /db_xref="UniProtKB/TrEMBL:A3R4U7"
FT /protein_id="ABO18576.1"
FT /translation="MDSIPYVILRILDFVFRSIFFPSLLFIINHNTTILWACACAYGFY
FT RAFRLIFKIKVEVHPATRAVFNDMVTRFQQESMFSPNDEVPEGIPIHEDVDLVSDPTHK
FT DIKRVRASRRVSYAVRVAHVAKSKVGLLANTKANELVYSRLCRDEMVIHGVRPSHIAHA
FT VPLAVAACFIPLDSDFLAASIRNCEGMEERRAVLGPSYGK"
FT CDS 2126. .2242
FT /codon_start=1
FT /product="p4"
FT /note="ORF3"
FT /db_xref="UniProtKB/TrEMBL:A3R4U8"
FT /protein_id="ABO18578.1"
FT /translation="MDFLVLALTSWTRMSRRRLASSSSLGHENLTTFHGTTA"
FT CDS 2226. .2417
FT /codon_start=1
FT /product="p7a"
FT /note="ORF4"
FT /db_xref="UniProtKB/TrEMBL:A3R4U9"
FT /protein_id="ABO18579.1"
FT /translation="MEQQRSEQRRERRVRSKSEDRKSMSDVGQSAVNREADIKKDMGPS
FT VSMTVVGENVEFTQHFHF"
FT CDS 2419. .2616
FT /codon_start=1
FT /product="p7b"
FT /note="ORF5"
FT /db_xref="UniProtKB/TrEMBL:A3R4V0"
FT /protein_id="ABO18580.1"
FT /translation="MSTIYVVQEESSGFLVWALVVAIVCIIGLLSYTPPERLNHSYHEN
FT NQKTQYITIGGASTSKVSTN"
FT CDS 2432. .2575
FT /codon_start=1
FT /product="p5b"
FT /note="ORF6"
FT /db_xref="UniProtKB/TrEMBL:A3R4V1"
FT /protein_id="ABO18581.1"
FT /translation="MLCRRSPLGSSCGHWLLQLCASLDSYHTPHLKDLTTLITKTIRRR
FT NT"
FT CDS 2645. .3343
FT /codon_start=1
FT /product="p25"
FT /note="capsid protein; ORF7"
FT /db_xref="GOA:A3R4V2"
FT /db_xref="InterPro:IPR000937"
FT /db_xref="UniProtKB/TrEMBL:A3R4V2"
FT /protein_id="ABO18582.1"
FT /translation="MAPKRNKGSKKTRMSDETVRAPAAGGVIQRTPGIPPRIRSTTIGT
FT RVTNTELLAGINVAAAGAFSVVGAGLFPSNLGWLNGIASNYSKFRWLAIKLIYVPIVPT
FT TTAGAMTMALSYDPADATPTSFQQVQQMYNSITAPVWAGFDGATVQLLGERPTTGAVCI
FT DVDVNRFGFTWYRYATLAAITALTANDRNLYIPSVCNVATSGGSAATNVGNLMIKYSIE
FT LIEPIPAAIN"
FT CDS 2691. .2975
FT /codon_start=1
FT /product="p10"
FT /note="ORF8"
FT /db_xref="UniProtKB/TrEMBL:A3R4V3"
FT /protein_id="ABO18583.1"
FT /translation="MRQCGLLLLVASYNVHLAFLLVLGPPLLVRVSPTLSCSQELMLLP
FT QGPSQSLVLVCSPATLAGLMGLLLTIANLDGLLSSSSMFPSSLLRLLGQ"
XX
SQ Sequence 3642 BP; 888 A; 850 C; 952 G; 952 T; 0 other;
ef153268 Length: 3642 16-SEP-2010 Type: N Check: 3488 ..
1 gaaacctaac cagtttctcg ttgatcagcg atcatggatt caatcccgta
51 tgtgatcctg cgcatactcg attttgtctt ccgctccatc ttctttccat
101 ccctactctt catcatcaat cacaacacca ctatcctatg ggcatgtgct
151 tgtgcctatg ggttttaccg tgcatttcgc cttatcttca agataaaggt
201 ggaggtacac ccagccaccc gagccgtctt caacgacatg gtcacccgtt
251 tccagcagga gagtatgttc tcacctaatg acgaagtgcc ggagggtatc
301 ccgatacacg aggatgttga ccttgttagc gaccccacac acaaagatat
351 taagcgggtc cgtgctagca ggcgagtctc atatgccgtg agggttgccc
401 atgtagccaa gtcgaaggtg ggactactcg ccaataccaa ggcgaatgag
451 ctggtttact cccgcctatg cagagatgag atggttatcc acggtgtacg
501 cccatcgcac attgcacacg cagtgccgct agctgtcgcg gcctgcttca
551 taccactaga cagtgatttc ctcgcagcct ctatcaggaa ttgcgagggg
601 atggaggagc ggagggccgt gttggggccc tcatatggaa aatagggagg
651 cctactctgc accagcgggt ttaccacgcc aacttggcgt ggtaatccag
701 agggtttgct ggtgaagaga ggaccacctc tggctaaacc taggaaactg
751 taccgttttt ctgggtttgg gactcatata cggtacggag tgcacgacca
801 ctcattgggc aatgttcgga ggggacttgt tgagcggcta ttcatggtgg
851 aaaccaagga tggcttagct ccaacaccaa agcccacccc tggcgtgtac
901 gccaagttat cccggtttca cgacctagtt agtgccaatc taacctcgac
951 caccagatta acatacgagc aatttctcgg attttattct ggtcgcaaat
1001 tggagaggta ccaacaggct gtggagtcgt tagcaatccg cccaataggg
1051 gtacaggatg cttggcttag cacgtttgtt aaggctgaaa aattaaacat
1101 ctcagctaaa cccgatccgg cacctagggt cattcagcct aggtcgccga
1151 ggtataatgt ggaggttgga cggttcctca gacatgctga ggaacatttg
1201 ttcgacgcca ttgaccgtgt gtatggtggg cggacggtgt tcaaggggtt
1251 gaatgccgat caggctggca tggagatgca agccatgtgg caagagttcg
1301 acaatcctgt aggcatcggt atggatgcgt ctcgtttcga ccaacacgtc
1351 tctaaggagg cgttggagtt cgaacacaag atttggctgt ccatgtatca
1401 tggggctgac aggaaaatct tatcgaagct gttggggatg caaatccaca
1451 accgcggtct tgctagatgc cctgatgggg aaatcaggta cacggtagag
1501 gggtgtcgta tgtctggaga tattaacaca tcttccggaa actgctatat
1551 tatgtgtgct tcagtgcaca actattgcag ccggttgggt gttatgagat
1601 ttagacttgc caacaatggt gatgattgca tgcttgtggt cgaagccaag
1651 gatgaggcac gtgtgaggca ggggctcatc gagtattaca gggagttagg
1701 tttcacaatg aaagtggagc ccactgtcta tgaactcgag cacttggagt
1751 tttgccaaac gcgcccagtc cttgttaatg gggcttatcg tatggtgcgc
1801 aatcttcatc aaggtatgtc taaggatcta cactccttgc atgatcttgg
1851 tagtaggaaa gctgctgaag cttgggtttc agcagttggc agcggaggcc
1901 gcgtaatgaa tgatggggta ccagtgctca aatcattctt tatgcagttt
1951 cctctgtcct ctggtcctaa aaccaagtcc gatatgagta tagcgttgca
2001 ggaagattgg aaatacaaat tcaatcggac tgggtgtttc aagaatttga
2051 cacccactcc acaatcccgc tactcatttt ggcgtgcgtt cggagtgttg
2101 ccagatgaac agattgctct agagaatgga ttttctcgtc ttagctttga
2151 caagctggac caggatgtcc aggaggaggt tagcctcctc cagttctctg
2201 gggcatgaaa acctaaccac ttttcatgga acaacagcgt agcgaacaac
2251 gtcgtgagcg tagagtgaga agcaaatcgg aggacaggaa gtctatgtct
2301 gatgttgggc aatctgctgt caacagggaa gcagatatca agaaagacat
2351 gggtccatcg gtttctatga cggtggtggg ggagaatgtg gagtttacac
2401 aacatttcca cttctgaaat gagcaccatt tatgttgtgc aggaggagtc
2451 ctctgggttc ctcgtgtggg cattggttgt tgcaattgtg tgcatcattg
2501 gactcttatc atacacccca cctgaaagac ttaaccactc ttatcacgaa
2551 aacaatcaga agacgcaata cataactatt ggaggagcat ccactagtaa
2601 agtttccacg aactgaattt actgctttct agtatagtta ataaatggca
2651 cctaaacgta ataaaggaag caagaagacc cgcatgtccg atgagacagt
2701 gcgggctcct gctgctggtg gcgtcataca acgtacacct ggcattcctc
2751 ctcgtattag gtccaccact attggtacgc gtgtcaccaa cactgagctg
2801 ctcgcaggaa ttaatgttgc tgccgcaggg gccttctcag tcgttggtgc
2851 tggtctgttc cccagcaacc ttggctggct taatgggatt gcttctaact
2901 atagcaaatt tagatggctt gctatcaagc tcatctatgt tcccatcgtc
2951 cctactacga ctgctggggc aatgaccatg gctttatctt atgatcccgc
3001 tgatgctaca ccaactagtt ttcaacaggt gcaacagatg tataacagca
3051 tcacagcgcc tgtctgggct ggttttgatg gagctactgt tcagcttctt
3101 ggggagcgtc cgacaactgg ggctgtgtgc attgacgtgg atgtgaatcg
3151 gtttggattc acatggtaca gatatgccac gcttgctgcc attaccgcac
3201 tcactgcaaa tgataggaat ctttacattc ccagtgtttg caatgtggct
3251 acttctggcg gctccgcagc taccaatgtt ggtaatttga tgataaagta
3301 tagtattgag ctcattgagc caatacccgc tgccatcaat tagatcccac
3351 atcctggtgt ggttaatcca gtgaaaaata ttaggaaatc cttgggattc
3401 acgccccgag ggggattgct tgcatagtgc aggtatgttg agtcacactg
3451 tgaggtattg gtgctgaatc ctggtaaaca ggcttgacag gtttgggtgg
3501 ttccaaaccg atgtattacc caagatactc atggtactcc actagaaaac
3551 actatgcgtg cgcacacggc tggctatgtc ctatcatagc tgggggcccc
3601 ggagtgcgaa accctcttat atacctggtc ttccaggtgc cc