Sequence of DPV Squash leaf curl Philippines virus
Squash leaf curl Philippines virus -[Taiwan] isolate AFPK5slv segment DNA-A, complete sequence.
ACC No: EF199774
Dated: 2010-09-07 | Length: 2733 | CRC: 585412383
ID EF199774; SV 1; circular; genomic DNA; STD; VRL; 2733 BP. XX AC EF199774; XX DT 31-JAN-2007 (Rel. 90, Created) DT 07-SEP-2010 (Rel. 106, Last updated, Version 2) XX DE Squash leaf curl Philippines virus -[Taiwan] isolate AFPK5slv segment DE DNA-A, complete sequence. XX KW . XX OS Squash leaf curl Philippines virus -[Taiwan] OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus; OC unclassified Begomovirus. XX RN [1] RP 1-2733 RA Tsai W.S., Shih S.L., Green S.K., Jan F.-J.; RT "Occurrence and Molecular Characterization of Squash leaf curl Phillipines RT virus in Taiwan"; RL Plant Dis. 91(7):907-907(2007). XX RN [2] RP 1-2733 RA Shih S.L., Tsai W.S., Lee L.M., Green S.K.; RT "Molecular characterization of a begomovirus associated with squash leaf RT curl disease in Taiwan"; RL Unpublished. XX RN [3] RP 1-2733 RA Shih S.L., Green S.K., Lee L.M.; RT ; RL Submitted (27-DEC-2006) to the EMBL/GenBank/DDBJ databases. RL Virology Unit, AVRDC-The World Vegetable Center, P.O. Box 42, Shanhua, RL Tainan, Taiwan, Republic of China XX FH Key Location/Qualifiers FH FT source 1. .2733 FT /organism="Squash leaf curl Philippines virus -[Taiwan]" FT /segment="DNA-A" FT /host="Cucurbita moschata" FT /isolate="AFPK5slv" FT /mol_type="genomic DNA" FT /country="Taiwan:Shanhua" FT /db_xref="taxon:420853" FT gene 120. .458 FT /gene="AV2" FT CDS 120. .458 FT /codon_start=1 FT /gene="AV2" FT /product="pre-coat protein" FT /db_xref="GOA:A2TGW6" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:A2TGW6" FT /protein_id="ABM92353.1" FT /translation="MWDPLMHDFPESVHGLRCMLAVKYLQEVEKTYSPDTVGYDLVRDL FT ILVLRAKNYVEATSRYYHFNTRFEGTPTSQLRQPLCFPCSCPHCPRHKGKGLDKQADEQ FT KTQDVQDV" FT gene 280. .1050 FT /gene="AV1" FT CDS 280. .1050 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:A2TGW7" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:A2TGW7" FT /protein_id="ABM92351.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYVSRAVVPIARVTKGKAWT FT NRPMNRKPKMYRMYRSPDVPRGCEGPCKVQSFESRHDVSHIGKVMCISDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVIFFLVRDRRPTGTPQDFGDVFNMFDNEP FT STATVKNMHRDRYQVLRKWHATVTGGTYASREQALVRKFVRVNSYIAYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(310. .828) FT /gene="AC5" FT CDS complement(310. .828) FT /codon_start=1 FT /gene="AC5" FT /product="AC5 protein" FT /db_xref="InterPro:IPR006892" FT /db_xref="InterPro:IPR013671" FT /db_xref="UniProtKB/TrEMBL:A2TGW8" FT /protein_id="ABM92352.1" FT /translation="MPFAQHLVSITMHVLHRCSARFIVEHIKNIPKILRSPCRTTVSDQ FT KKYDTISMIFSLDIFIHPYLSQNINRFHTKSLPNAMCESGSSCNIADTHYLPNMRDIVP FT RFERLDFTRAFTAPWHVGTSIHPVHLGFSVHRPVCPGLSLCDAGNGDNCTGNIGAVEVE FT TSAYLRSGC" FT gene complement(1047. .1457) FT /gene="AC3" FT CDS complement(1047. .1457) FT /codon_start=1 FT /gene="AC3" FT /product="AC3 protein" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:A2TGW9" FT /protein_id="ABM92354.1" FT /translation="MITDSRTGEYITADRAESGVYIWDVPNPLYFKIMKHDIRPCLEEH FT DIIKVHIMFNHNLRKALGLHKCVLMFQIWTGLRPPIGIFLRVFKTQVLKYLEMLGVIGI FT NNVLRAVYHVLDNVLEKTIDVWTTYDVKLNIY" FT gene complement(1192. .1596) FT /gene="AC2" FT CDS complement(1192. .1596) FT /codon_start=1 FT /gene="AC2" FT /product="AC2 protein" FT /db_xref="GOA:A2TGX0" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:A2TGX0" FT /protein_id="ABM92355.1" FT /translation="MQSSSHSKNHSIPVAKESLPQKKKKNIRRRRIDLPCGCSYYMSIN FT CHDHGFTHRGVHHCGSSREWRVYLGRSKSPLFQNNETRHQTMPRRTRHNQSAHHVQPQP FT AESTGTSQMCSNVPNLDGLTPADWDFLESL" FT gene complement(1499. .2584) FT /gene="AC1" FT CDS complement(1499. .2584) FT /codon_start=1 FT /gene="AC1" FT /product="replication-associated protein" FT /db_xref="GOA:A2TGX1" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:A2TGX1" FT /protein_id="ABM92350.1" FT /translation="MAPPKRFRIQAKNYFLTYPKCSLTKEEALSQLQTLETPTSKKFIK FT ICRELHEDGSPHIHVLIQFEGKFVCTNNRFFDLVSPSRSAHFHPNIQGAKSSSDVKSYI FT DKDGETIDWGEFQVDGRSARGGQQSANDTAAKALNSGSAEAALAIIREELPKDFIFQYH FT NIKSNLDKIFAPPLEVYVSPFSISSFDQVPQELVDWVSGNVVCSAARPIRPIGIVLEGD FT SRTGKTAWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVMIKGGIPTIFLCNPGPNSSYKEYLDEDKNAALKQWALKNAIFITLEEPL FT YSGRERIATAEEEEEHQAQTN" FT gene complement(2170. .2427) FT /gene="AC4" FT CDS complement(2170. .2427) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:A2TGX2" FT /protein_id="ABM92356.1" FT /translation="MGLRISTFLSSSKESSSARITDSSTWCPQVGQHISIRTFRELNRA FT PTSSPISTRMEKLSIGENSRSTAEVLEAVSSLLTTLPQRH" XX SQ Sequence 2733 BP; 742 A; 585 C; 601 G; 805 T; 0 other; ef199774 Length: 2733 07-SEP-2010 Type: N Check: 3840 .. 1 accggatggc cgcgcttttt ttttaggtgg gccctcgacc aatgaaattc 51 actccacatg aattatttat tacatgggga ccattaaata gacttccgca 101 ccaagttttg ctccacaaca tgtgggatcc acttatgcac gatttccctg 151 aaagtgttca tggtctaagg tgcatgctag ctgtgaaata tcttcaggag 201 gtggaaaaaa catattctcc ggacacagtc ggctacgatc ttgttcgcga 251 tcttattctt gttcttcgcg caaagaacta tgtcgaagcg accagccgat 301 attatcattt caacacccgc ttcgaaggta cgccgacgtc tcaacttcga 351 cagcccctat gtttcccgtg cagttgtccc cattgcccgc gtcacaaagg 401 gaaaggcctg gacaaacagg ccgatgaaca gaaaacccaa gatgtacagg 451 atgtatagaa gtcccgacgt gccaaggggc tgtgaaggcc cttgtaaagt 501 ccaatcgttc gaatctaggc acgatgtctc tcatattggg aaggtaatgt 551 gtatcagcga tgttacacga ggaaccggac tcacacatcg cgttgggaag 601 cgattttgtg tgaaatctgt ttatgttttg ggaaagatat ggatggatga 651 aaatatcaag actaaaaatc atactaatag tgtcatattt tttctggtcc 701 gagaccgtcg tcctacaggg actcctcagg attttgggga tgtttttaat 751 atgttcgaca atgaaccgag cactgcaacg gtgaagaaca tgcatcgtga 801 tcgataccaa gtgctgcgca aatggcatgc cactgtgact ggaggaacat 851 acgcatcaag ggagcaagca ttagttagga agtttgttag agtcaatagt 901 tatattgcct acaaccaaca agaggccggc aagtatgaga atcatactga 951 aaatgcatta atgttgtata tggcctgtac tcatgcatcg aaccctgtat 1001 acgcgacttt gaaaattcgg atctattttt atgattcggt aacaaattaa 1051 tatatattca atttcacatc atacgttgtc catacatcaa tcgtcttttc 1101 caatacattg tccagaacat gataaacggc tcttaataca ttgttaatac 1151 caatcacccc taacatttcc aagtacttaa ggacttgggt tttaaagact 1201 ctcaagaaaa tcccaatcgg cgggcgtaag cccgtccaga tttggaacat 1251 tagaacacat ttgtgaagtc ccagtgcttt ccgcaggttg tggttgaaca 1301 tgatgtgcac tttgattatg tcgtgttctt ctaggcatgg tctgatgtcg 1351 tgtttcatta ttttgaaata gaggggattt ggaacgtccc agatatacac 1401 gccactctct gctcgatccg cagtgatgta ctcccctgtg cgtgaatccg 1451 tgatcatggc aatttattga catgtaatac gagcatccgc acggtagatc 1501 aattcgtctg cgcctgatgt tcttcttctt cttctgcggt agcgattctt 1551 tcgcgaccgg aatagagtgg ttcttcgagt gtgatgaaga ttgcattctt 1601 taatgcccac tgttttagtg ctgcattctt atcttcatcg agatactctt 1651 tataactgct gtttggtccc ggattgcaga ggaagatggt gggaattcca 1701 cctttaatca tgactggctt tccgtacttc gtgttacttt gccagtctct 1751 ttgggccccc atgaattctt taaaatgctt taaatagtgg ggatctacgt 1801 catcaatgac gttgtaccaa gcatcattac tgtatacctt tggacttaag 1851 tccaagtggc cgcacaagta attgtgtggt cccaaagaac gcgcccacgc 1901 agttttgccc gttctactat caccctctaa aactattcct atgggtctaa 1951 tcggccgcgc agcggaacac accacgttac ctgaaaccca atcgacgagt 2001 tcttgcggaa cttgatcgaa ggatgaaatc gaaaaaggag aaacatacac 2051 ctctaaagga ggtgcaaata tcttatctaa attactttta atattatggt 2101 attgaaagat aaaatctttc gggagttctt ctctaattat tgctaaagct 2151 gcttcggctg aacctgaatt taatgccttt gcggcagtgt cgttagcaga 2201 ctgctgaccg cctctagcac ttctgccgtc gacctggaat tctccccaat 2251 cgatagtttc tccatccttg tcgatatagg acttgacgtc ggagctcgat 2301 ttagctccct gaatgttcgg atggaaatgt gctgaccgac ttggggacac 2351 caagtcgaag aatctgttat tcgtgcagac gaactttcct tcgaactgga 2401 taagaacgtg gatatgcgga gacccatctt cgtgtagttc tctgcaaatt 2451 ttgataaatt tcttcgaagt tggagtttct agggtttgta attgggaaag 2501 tgcctcttct ttagtaagag agcacttggg ataagtaagg aaataatttt 2551 tggcttgtat tctaaaacgc tttggaggtg ccatgtcagc agaaatgaat 2601 cggagacaac caaacttgcc aaatgaattg gagacaggag cacaatatat 2651 agtatgtctc taaatggcat tttggtaatt ctcaaatgaa acttcaaatt 2701 ttgaattggt aaagcggcca tccgtataat att