Sequence of DPV Squash leaf curl Philippines virus
Squash leaf curl Philippines virus -[Taiwan] isolate AFPK5slv segment DNA-A, complete sequence.
ACC No: EF199774
Dated: 2010-09-07 | Length: 2733 | CRC: 585412383
ID EF199774; SV 1; circular; genomic DNA; STD; VRL; 2733 BP.
XX
AC EF199774;
XX
DT 31-JAN-2007 (Rel. 90, Created)
DT 07-SEP-2010 (Rel. 106, Last updated, Version 2)
XX
DE Squash leaf curl Philippines virus -[Taiwan] isolate AFPK5slv segment
DE DNA-A, complete sequence.
XX
KW .
XX
OS Squash leaf curl Philippines virus -[Taiwan]
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
XX
RN [1]
RP 1-2733
RA Tsai W.S., Shih S.L., Green S.K., Jan F.-J.;
RT "Occurrence and Molecular Characterization of Squash leaf curl Phillipines
RT virus in Taiwan";
RL Plant Dis. 91(7):907-907(2007).
XX
RN [2]
RP 1-2733
RA Shih S.L., Tsai W.S., Lee L.M., Green S.K.;
RT "Molecular characterization of a begomovirus associated with squash leaf
RT curl disease in Taiwan";
RL Unpublished.
XX
RN [3]
RP 1-2733
RA Shih S.L., Green S.K., Lee L.M.;
RT ;
RL Submitted (27-DEC-2006) to the EMBL/GenBank/DDBJ databases.
RL Virology Unit, AVRDC-The World Vegetable Center, P.O. Box 42, Shanhua,
RL Tainan, Taiwan, Republic of China
XX
FH Key Location/Qualifiers
FH
FT source 1. .2733
FT /organism="Squash leaf curl Philippines virus -[Taiwan]"
FT /segment="DNA-A"
FT /host="Cucurbita moschata"
FT /isolate="AFPK5slv"
FT /mol_type="genomic DNA"
FT /country="Taiwan:Shanhua"
FT /db_xref="taxon:420853"
FT gene 120. .458
FT /gene="AV2"
FT CDS 120. .458
FT /codon_start=1
FT /gene="AV2"
FT /product="pre-coat protein"
FT /db_xref="GOA:A2TGW6"
FT /db_xref="InterPro:IPR002511"
FT /db_xref="InterPro:IPR005159"
FT /db_xref="UniProtKB/TrEMBL:A2TGW6"
FT /protein_id="ABM92353.1"
FT /translation="MWDPLMHDFPESVHGLRCMLAVKYLQEVEKTYSPDTVGYDLVRDL
FT ILVLRAKNYVEATSRYYHFNTRFEGTPTSQLRQPLCFPCSCPHCPRHKGKGLDKQADEQ
FT KTQDVQDV"
FT gene 280. .1050
FT /gene="AV1"
FT CDS 280. .1050
FT /codon_start=1
FT /gene="AV1"
FT /product="coat protein"
FT /db_xref="GOA:A2TGW7"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProtKB/TrEMBL:A2TGW7"
FT /protein_id="ABM92351.1"
FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYVSRAVVPIARVTKGKAWT
FT NRPMNRKPKMYRMYRSPDVPRGCEGPCKVQSFESRHDVSHIGKVMCISDVTRGTGLTHR
FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVIFFLVRDRRPTGTPQDFGDVFNMFDNEP
FT STATVKNMHRDRYQVLRKWHATVTGGTYASREQALVRKFVRVNSYIAYNQQEAGKYENH
FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN"
FT gene complement(310. .828)
FT /gene="AC5"
FT CDS complement(310. .828)
FT /codon_start=1
FT /gene="AC5"
FT /product="AC5 protein"
FT /db_xref="InterPro:IPR006892"
FT /db_xref="InterPro:IPR013671"
FT /db_xref="UniProtKB/TrEMBL:A2TGW8"
FT /protein_id="ABM92352.1"
FT /translation="MPFAQHLVSITMHVLHRCSARFIVEHIKNIPKILRSPCRTTVSDQ
FT KKYDTISMIFSLDIFIHPYLSQNINRFHTKSLPNAMCESGSSCNIADTHYLPNMRDIVP
FT RFERLDFTRAFTAPWHVGTSIHPVHLGFSVHRPVCPGLSLCDAGNGDNCTGNIGAVEVE
FT TSAYLRSGC"
FT gene complement(1047. .1457)
FT /gene="AC3"
FT CDS complement(1047. .1457)
FT /codon_start=1
FT /gene="AC3"
FT /product="AC3 protein"
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProtKB/TrEMBL:A2TGW9"
FT /protein_id="ABM92354.1"
FT /translation="MITDSRTGEYITADRAESGVYIWDVPNPLYFKIMKHDIRPCLEEH
FT DIIKVHIMFNHNLRKALGLHKCVLMFQIWTGLRPPIGIFLRVFKTQVLKYLEMLGVIGI
FT NNVLRAVYHVLDNVLEKTIDVWTTYDVKLNIY"
FT gene complement(1192. .1596)
FT /gene="AC2"
FT CDS complement(1192. .1596)
FT /codon_start=1
FT /gene="AC2"
FT /product="AC2 protein"
FT /db_xref="GOA:A2TGX0"
FT /db_xref="InterPro:IPR000942"
FT /db_xref="UniProtKB/TrEMBL:A2TGX0"
FT /protein_id="ABM92355.1"
FT /translation="MQSSSHSKNHSIPVAKESLPQKKKKNIRRRRIDLPCGCSYYMSIN
FT CHDHGFTHRGVHHCGSSREWRVYLGRSKSPLFQNNETRHQTMPRRTRHNQSAHHVQPQP
FT AESTGTSQMCSNVPNLDGLTPADWDFLESL"
FT gene complement(1499. .2584)
FT /gene="AC1"
FT CDS complement(1499. .2584)
FT /codon_start=1
FT /gene="AC1"
FT /product="replication-associated protein"
FT /db_xref="GOA:A2TGX1"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="InterPro:IPR022690"
FT /db_xref="InterPro:IPR022692"
FT /db_xref="UniProtKB/TrEMBL:A2TGX1"
FT /protein_id="ABM92350.1"
FT /translation="MAPPKRFRIQAKNYFLTYPKCSLTKEEALSQLQTLETPTSKKFIK
FT ICRELHEDGSPHIHVLIQFEGKFVCTNNRFFDLVSPSRSAHFHPNIQGAKSSSDVKSYI
FT DKDGETIDWGEFQVDGRSARGGQQSANDTAAKALNSGSAEAALAIIREELPKDFIFQYH
FT NIKSNLDKIFAPPLEVYVSPFSISSFDQVPQELVDWVSGNVVCSAARPIRPIGIVLEGD
FT SRTGKTAWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPVMIKGGIPTIFLCNPGPNSSYKEYLDEDKNAALKQWALKNAIFITLEEPL
FT YSGRERIATAEEEEEHQAQTN"
FT gene complement(2170. .2427)
FT /gene="AC4"
FT CDS complement(2170. .2427)
FT /codon_start=1
FT /gene="AC4"
FT /product="AC4 protein"
FT /db_xref="InterPro:IPR002488"
FT /db_xref="UniProtKB/TrEMBL:A2TGX2"
FT /protein_id="ABM92356.1"
FT /translation="MGLRISTFLSSSKESSSARITDSSTWCPQVGQHISIRTFRELNRA
FT PTSSPISTRMEKLSIGENSRSTAEVLEAVSSLLTTLPQRH"
XX
SQ Sequence 2733 BP; 742 A; 585 C; 601 G; 805 T; 0 other;
ef199774 Length: 2733 07-SEP-2010 Type: N Check: 3840 ..
1 accggatggc cgcgcttttt ttttaggtgg gccctcgacc aatgaaattc
51 actccacatg aattatttat tacatgggga ccattaaata gacttccgca
101 ccaagttttg ctccacaaca tgtgggatcc acttatgcac gatttccctg
151 aaagtgttca tggtctaagg tgcatgctag ctgtgaaata tcttcaggag
201 gtggaaaaaa catattctcc ggacacagtc ggctacgatc ttgttcgcga
251 tcttattctt gttcttcgcg caaagaacta tgtcgaagcg accagccgat
301 attatcattt caacacccgc ttcgaaggta cgccgacgtc tcaacttcga
351 cagcccctat gtttcccgtg cagttgtccc cattgcccgc gtcacaaagg
401 gaaaggcctg gacaaacagg ccgatgaaca gaaaacccaa gatgtacagg
451 atgtatagaa gtcccgacgt gccaaggggc tgtgaaggcc cttgtaaagt
501 ccaatcgttc gaatctaggc acgatgtctc tcatattggg aaggtaatgt
551 gtatcagcga tgttacacga ggaaccggac tcacacatcg cgttgggaag
601 cgattttgtg tgaaatctgt ttatgttttg ggaaagatat ggatggatga
651 aaatatcaag actaaaaatc atactaatag tgtcatattt tttctggtcc
701 gagaccgtcg tcctacaggg actcctcagg attttgggga tgtttttaat
751 atgttcgaca atgaaccgag cactgcaacg gtgaagaaca tgcatcgtga
801 tcgataccaa gtgctgcgca aatggcatgc cactgtgact ggaggaacat
851 acgcatcaag ggagcaagca ttagttagga agtttgttag agtcaatagt
901 tatattgcct acaaccaaca agaggccggc aagtatgaga atcatactga
951 aaatgcatta atgttgtata tggcctgtac tcatgcatcg aaccctgtat
1001 acgcgacttt gaaaattcgg atctattttt atgattcggt aacaaattaa
1051 tatatattca atttcacatc atacgttgtc catacatcaa tcgtcttttc
1101 caatacattg tccagaacat gataaacggc tcttaataca ttgttaatac
1151 caatcacccc taacatttcc aagtacttaa ggacttgggt tttaaagact
1201 ctcaagaaaa tcccaatcgg cgggcgtaag cccgtccaga tttggaacat
1251 tagaacacat ttgtgaagtc ccagtgcttt ccgcaggttg tggttgaaca
1301 tgatgtgcac tttgattatg tcgtgttctt ctaggcatgg tctgatgtcg
1351 tgtttcatta ttttgaaata gaggggattt ggaacgtccc agatatacac
1401 gccactctct gctcgatccg cagtgatgta ctcccctgtg cgtgaatccg
1451 tgatcatggc aatttattga catgtaatac gagcatccgc acggtagatc
1501 aattcgtctg cgcctgatgt tcttcttctt cttctgcggt agcgattctt
1551 tcgcgaccgg aatagagtgg ttcttcgagt gtgatgaaga ttgcattctt
1601 taatgcccac tgttttagtg ctgcattctt atcttcatcg agatactctt
1651 tataactgct gtttggtccc ggattgcaga ggaagatggt gggaattcca
1701 cctttaatca tgactggctt tccgtacttc gtgttacttt gccagtctct
1751 ttgggccccc atgaattctt taaaatgctt taaatagtgg ggatctacgt
1801 catcaatgac gttgtaccaa gcatcattac tgtatacctt tggacttaag
1851 tccaagtggc cgcacaagta attgtgtggt cccaaagaac gcgcccacgc
1901 agttttgccc gttctactat caccctctaa aactattcct atgggtctaa
1951 tcggccgcgc agcggaacac accacgttac ctgaaaccca atcgacgagt
2001 tcttgcggaa cttgatcgaa ggatgaaatc gaaaaaggag aaacatacac
2051 ctctaaagga ggtgcaaata tcttatctaa attactttta atattatggt
2101 attgaaagat aaaatctttc gggagttctt ctctaattat tgctaaagct
2151 gcttcggctg aacctgaatt taatgccttt gcggcagtgt cgttagcaga
2201 ctgctgaccg cctctagcac ttctgccgtc gacctggaat tctccccaat
2251 cgatagtttc tccatccttg tcgatatagg acttgacgtc ggagctcgat
2301 ttagctccct gaatgttcgg atggaaatgt gctgaccgac ttggggacac
2351 caagtcgaag aatctgttat tcgtgcagac gaactttcct tcgaactgga
2401 taagaacgtg gatatgcgga gacccatctt cgtgtagttc tctgcaaatt
2451 ttgataaatt tcttcgaagt tggagtttct agggtttgta attgggaaag
2501 tgcctcttct ttagtaagag agcacttggg ataagtaagg aaataatttt
2551 tggcttgtat tctaaaacgc tttggaggtg ccatgtcagc agaaatgaat
2601 cggagacaac caaacttgcc aaatgaattg gagacaggag cacaatatat
2651 agtatgtctc taaatggcat tttggtaatt ctcaaatgaa acttcaaatt
2701 ttgaattggt aaagcggcca tccgtataat att