Sequence of DPV Citrus tristeza virus

Citrus tristeza virus isolate T68-1 CP gene, partial cds; P18 gene, complete cds; and P13 gene, partial cds.

ACC No: EF200108

Dated: 2007-01-15 | Length: 840 | CRC: 253233333

                
ID   EF200108; SV 1; linear; genomic RNA; STD; VRL; 840 BP.
XX
AC   EF200108;
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DT   15-JAN-2007 (Rel. 90, Created)
DT   15-JAN-2007 (Rel. 90, Last updated, Version 1)
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DE   Citrus tristeza virus isolate T68-1 CP gene, partial cds; P18 gene,
DE   complete cds; and P13 gene, partial cds.
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KW   .
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OS   Citrus tristeza virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae;
OC   Closterovirus.
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RN   [1]
RP   1-840
RA   Hilf M.E.;
RT   "Discovery of New Viral Genotypes of Citrus Tristeza Virus with
RT   Overlapping, Degenerate Primers";
RL   Unpublished.
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RN   [2]
RP   1-840
RA   Hilf M.E.;
RT   ;
RL   Submitted (27-DEC-2006) to the EMBL/GenBank/DDBJ databases.
RL   USDA-ARS-USHRL, 2001 S. Rock Road, Fort Pierce, FL 34945, USA
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FH   Key             Location/Qualifiers
FH
FT   source          1. .840
FT                   /organism="Citrus tristeza virus"
FT                   /lab_host="sweet orange"
FT                   /isolate="T68-1"
FT                   /mol_type="genomic RNA"
FT                   /country="USA"
FT                   /virion
FT                   /db_xref="taxon:12162"
FT   CDS             <1. .84
FT                   /codon_start=1
FT                   /product="CP"
FT                   /note="major capsid protein; CP; coding region interrupted
FT                   by sequencing gap"
FT                   /protein_id="ABM60774.1"
FT                   /translation="KEQLLKKRGADEVVVTNVRQLGKFNTR"
FT   CDS             50. .553
FT                   /codon_start=1
FT                   /product="P18"
FT                   /protein_id="ABM60775.1"
FT                   /translation="MSGSLGNLTHVDLLRSDSRFLSGWWSFIVNVGDIIVRFALHVPSE
FT                   DMLNSFSAISNCTIIADGSALLKDNTVVDRLESMNPLAYLLKLAKTTTTICFTMSNKVL
FT                   FGTTKSEPLSCLAITSDRVLFKVIMGINVDDSRCGCSIWFYNNGTFQNGLTRCNNLVAL
FT                   FSAT"
FT   mRNA            587. .840
FT   CDS             587. .>840
FT                   /codon_start=1
FT                   /product="P13"
FT                   /protein_id="ABM60776.1"
FT                   /translation="MGIRRVWLKVMAVITVLWYGKEPSISEGYNALMNDDFKFIDAHFS
FT                   NVSYAKKCYELANFDLDFLRIVIIPLSGGAVNESRADRA"
XX
SQ   Sequence 840 BP; 213 A; 140 C; 203 G; 284 T; 0 other;

ef200108 Length: 840  15-JAN-2007  Type: N  Check: 2034  ..

       1  aaagaacaat tgttgaagaa gcgaggggct gatgaagttg tagttaccaa
      51  tgtcaggcag cttgggaaat ttaacacacg ttgatctatt gcgttctgat
     101  tctcgatttc tatcgggatg gtggagtttc atcgtgaacg tgggtgatat
     151  aatcgttcgg tttgcgttac atgttcctag tgaggatatg ctgaatagct
     201  tttcagctat atcgaattgt acgatcatag cagacggtag tgctttacta
     251  aaagacaaca ctgtggttga ccgtttagag agcatgaatc ctttggctta
     301  tttgttaaaa ttagcgaaaa cgactactac tatttgtttt actatgtcta
     351  ataaggttct ttttggtact actaaatctg aaccgcttag ttgtttagct
     401  atcacgtcgg atcgagtttt attcaaagtt attatgggta ttaacgttga
     451  tgattctcga tgtggctgca gtatttggtt ttacaacaat gggacgtttc
     501  aaaacgggtt gacccgttgt aacaatctcg tcgctttgtt tagcgcgact
     551  tagacacgaa gtgaccgttc gggtttaatt gctgcaatgg gtattcgacg
     601  cgtgtggtta aaggttatgg ctgtaattac ggtattgtgg tatggtaagg
     651  aaccttccat tagcgaaggt tacaatgctc ttatgaatga tgactttaag
     701  ttcatcgatg cgcacttttc aaatgtttct tatgctaaga aatgttacga
     751  gttggctaac ttcgacttag actttctacg catcgtcatc attcccttga
     801  gcggtggtgc ggtgaatgaa tcgcgtgctg atcgcgctaa