Sequence of DPV Citrus tristeza virus
Citrus tristeza virus isolate NS25 CP gene, partial cds; P18 gene, complete cds; and P13 gene, partial cds.
ACC No: EF200110
Dated: 2007-01-15 | Length: 840 | CRC: -1751353101
ID EF200110; SV 1; linear; genomic RNA; STD; VRL; 840 BP. XX AC EF200110; XX DT 15-JAN-2007 (Rel. 90, Created) DT 15-JAN-2007 (Rel. 90, Last updated, Version 1) XX DE Citrus tristeza virus isolate NS25 CP gene, partial cds; P18 gene, complete DE cds; and P13 gene, partial cds. XX KW . XX OS Citrus tristeza virus OC Viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae; OC Closterovirus. XX RN [1] RP 1-840 RA Hilf M.E.; RT "Discovery of New Viral Genotypes of Citrus Tristeza Virus with RT Overlapping, Degenerate Primers"; RL Unpublished. XX RN [2] RP 1-840 RA Hilf M.E.; RT ; RL Submitted (27-DEC-2006) to the EMBL/GenBank/DDBJ databases. RL USDA-ARS-USHRL, 2001 S. Rock Road, Fort Pierce, FL 34945, USA XX FH Key Location/Qualifiers FH FT source 1. .840 FT /organism="Citrus tristeza virus" FT /lab_host="sweet orange" FT /isolate="NS25" FT /mol_type="genomic RNA" FT /country="New Zealand" FT /virion FT /db_xref="taxon:12162" FT CDS <1. .84 FT /codon_start=1 FT /product="CP" FT /note="major capsid protein" FT /protein_id="ABM60780.1" FT /translation="KEQLLKKRGADEVVVTNVRQLGKFNTR" FT CDS 50. .553 FT /codon_start=1 FT /product="P18" FT /protein_id="ABM60781.1" FT /translation="MSGSLGNLTHVDLLRSDSRFVSGWWSFIVNVGDIIVRFALHVPSE FT DVLNSFSAISNCTIIADGSALLKDNTVVDRLESMNPLAYLLKLAKTTTTICFTMSNKVL FT FGTTKSEPLICLAITSDRVLFKVIMGTNVDDSRCGCSIWFYNNGMFQNGLTRCNNLVAL FT FSAT" FT CDS 587. .>840 FT /codon_start=1 FT /product="P13" FT /protein_id="ABM60782.1" FT /translation="MSIRRVWLKVMAVITVLWYGKEPSISEGYNALMNDDFKFIDTHFS FT NVSYAKKCYELANFDLDFLRIVVIPLSGGAVNESRADRA" XX SQ Sequence 840 BP; 218 A; 140 C; 200 G; 282 T; 0 other; ef200110 Length: 840 15-JAN-2007 Type: N Check: 9747 .. 1 aaagaacaat tgttgaagaa gcgaggggct gatgaagtcg tagttactaa 51 tgtcaggcag cttgggaaat ttaacacacg ttgatctatt gcgttctgat 101 tcccggtttg tatcgggatg gtggagtttc atcgtgaacg tgggtgatat 151 aatcgttcgg tttgcgttac acgttcctag tgaagatgtg ctgaacagct 201 tttcagctat atcgaattgt acgatcatag cggacggtag tgctttacta 251 aaagacaaca ccgtggttga ccgtttagag agcatgaacc ctttggctta 301 tttgttaaaa ttagcgaaaa cgactactac tatttgtttt actatgtcta 351 ataaggttct ttttggtact actaaatccg aaccgcttat ttgtttagct 401 attacatcgg accgagtttt attcaaagtt attatgggta ctaacgttga 451 tgattctcga tgtggctgca gtatttggtt ttacaacaat gggatgtttc 501 aaaatgggtt gacccgttgt aataatctcg tcgctttgtt tagcgcgact 551 tagacacgaa gtgaccgttc gggtttaatt gctgcaatga gtattcgacg 601 tgtgtggtta aaggtaatgg ctgtaattac ggtattgtgg tatggtaaag 651 aaccttccat tagcgaaggt tacaacgctc ttatgaatga tgactttaag 701 tttatcgata cgcatttttc aaacgtctct tatgctaaga aatgttacga 751 attggctaat ttcgatttag actttctacg catcgttgtc attcccctaa 801 gtggtggtgc ggtgaatgaa tcgcgtgcag atcgcgctaa