Sequence of DPV Tomato yellow leaf curl virus

Tomato yellow leaf curl virus isolate recombinant Ty-1S-C.108 400dpi type VI REn and TrAP genes, complete cds; and nonfunctional Rep gene, partial sequence.

ACC No: EF423675

Dated: 2007-07-23 | Length: 835 | CRC: 636198076

                
ID   EF423675; SV 1; linear; genomic DNA; STD; VRL; 835 BP.
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AC   EF423675;
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DT   23-JUL-2007 (Rel. 92, Created)
DT   23-JUL-2007 (Rel. 92, Last updated, Version 1)
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DE   Tomato yellow leaf curl virus isolate recombinant Ty-1S-C.108 400dpi type
DE   VI REn and TrAP genes, complete cds; and nonfunctional Rep gene, partial
DE   sequence.
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KW   .
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OS   Tomato yellow leaf curl virus
OC   Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN   [1]
RP   1-835
RX   DOI; 10.1016/j.virol.2007.03.045.
RX   PUBMED; 17467025.
RA   Garcia-Andres S., Tomas D.M., Sanchez-Campos S., Navas-Castillo J.,
RA   Moriones E.;
RT   "Frequent occurrence of recombinants in mixed infections of tomato yellow
RT   leaf curl disease-associated begomoviruses";
RL   Virology 365(1):210-219(2007).
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RN   [2]
RP   1-835
RA   Garcia-Andres S., Tomas D.M., Sanchez-Campos S., Navas-Castillo J.,
RA   Moriones E.;
RT   ;
RL   Submitted (02-FEB-2007) to the EMBL/GenBank/DDBJ databases.
RL   Fruticultura Subtropical y Fitopatologia, Estacion Experimental La Mayora,
RL   CSIC, Algarrobo-Costa, Malaga 29750, Spain
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FH   Key             Location/Qualifiers
FH
FT   source          1. .835
FT                   /organism="Tomato yellow leaf curl virus"
FT                   /isolate="recombinant Ty-1S-C.108 400dpi type VI"
FT                   /mol_type="genomic DNA"
FT                   /country="Spain:Malaga"
FT                   /note="TYLCSV/TYLCV recombinant"
FT                   /db_xref="taxon:10832"
FT   CDS             complement(61. .465)
FT                   /codon_start=1
FT                   /product="REn"
FT                   /protein_id="ABS29953.1"
FT                   /translation="MDSRTGELITAHQATSGVYTFEINNPLYFKITEHSQRPFLMNHDI
FT                   ISIQIRFNHNLRKALGIHKCFLNFRIWTTLQSPTGHFLRVFRYQVYKYLNNIGVISLNN
FT                   VIRAVDYVLFDVFENTIDVIEQHEIKYNLY"
FT   CDS             complement(206. .613)
FT                   /codon_start=1
FT                   /product="TrAP"
FT                   /protein_id="ABS29954.1"
FT                   /translation="MQPSSPSTSHCSQVSIKVQHKIAKKRQVRRRRVDLDCGCSYYQHL
FT                   NCNNHGFTHRGTHHCASSNEWRLYLRDKQSPLFQDNRTQPEAISNEPRHHFHSDKIQPQ
FT                   LEEGTGDSQMFSQLPHLDDLTVSDWSFFKSL"
FT   misc_feature    complement(522. .>835)
FT                   /note="nonfunctional Rep due to mutation"
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SQ   Sequence 835 BP; 214 A; 160 C; 179 G; 282 T; 0 other;

ef423675 Length: 835  23-JUL-2007  Type: N  Check: 3494  ..

       1  ttctaaccca gtgtatgcta cgttgaaaat acgtatctat ttttatgatg
      51  ctgtaacaaa ttaataaaga ttgtatttta tttcatgttg ttcaattaca
     101  tctattgtgt tctcaaatac atcgaataag acataatcaa ctgctctaat
     151  aacattgttt aatgaaatta cacctatatt attcaaatac ttatacactt
     201  gatacctaaa gactcttaaa aaatgaccag tcggagactg taaggtcgtc
     251  cagatgcgga agttgagaaa acatttgtga atccccagtg ccttcctcaa
     301  gttgtggttg aatcttatct gaatggaaat gatgtcgtgg ttcattagaa
     351  atggcctctg gctgtgttct gttatcttga aatagagggg attgtttatc
     401  tcgaaggtat aaacgccact cgttgcttga tgcgcagtga tgagttcccc
     451  tgtgcgtgaa tccatgattg ttgcagttga ggtgttggta gtatgagcag
     501  ccacagtcca gatctaccct tctacgcctc acttgtctct tcttggctat
     551  cttgtgttgg accttgattg atacttgcga acagtggctc gtagagggtg
     601  acgaaggttg cattcttgag agccccattt ttccaggata tgtttttttc
     651  ttcgctagat attccctata tgaggagtag gtcctggatt gcagaggaag
     701  ataggggaat ccccccttta atttgaatgg gcttcccgaa ctttgtgttg
     751  ctttgccagt ccctctgggc ccccatgaat tctttgaagt gctttaaata
     801  atgcgggtct acgtcatcaa tgacgttgta ccatg