Sequence of DPV Tomato leaf curl New Delhi virus
Tomato leaf curl New Delhi virus from cucumber segment DNA-A, complete sequence.
ACC No: EF450316
Dated: 2007-03-27 | Length: 2738 | CRC: 217651082
ID EF450316; SV 1; circular; genomic DNA; STD; VRL; 2738 BP.
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AC EF450316;
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DT 27-MAR-2007 (Rel. 91, Created)
DT 27-MAR-2007 (Rel. 91, Last updated, Version 1)
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DE Tomato leaf curl New Delhi virus from cucumber segment DNA-A, complete
DE sequence.
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KW .
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OS Tomato leaf curl New Delhi virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2738
RA Monger W.A., Mumford R., Kelly P.;
RT "Tomato leaf curl virus in cucumber from Bangladesh";
RL Unpublished.
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RN [2]
RP 1-2738
RA Monger W.A., Mumford R., Kelly P.;
RT ;
RL Submitted (22-FEB-2007) to the EMBL/GenBank/DDBJ databases.
RL Plant Health, Central Science Laboratory, Sand Hutton, York YO41 1LZ, UK
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FH Key Location/Qualifiers
FH
FT source 1. .2738
FT /organism="Tomato leaf curl New Delhi virus"
FT /segment="DNA-A"
FT /specific_host="cucumber"
FT /mol_type="genomic DNA"
FT /country="Bangladesh"
FT /isolation_source="leaf"
FT /db_xref="taxon:223347"
FT gene 118. .447
FT /gene="AV2"
FT CDS 118. .447
FT /codon_start=1
FT /gene="AV2"
FT /product="pre-coat protein"
FT /protein_id="ABO40821.1"
FT /translation="MWDPLLHEFPESVHGLRCMLAVKYLQEIEKNYSPDTVGYDLVRDL
FT ILVVRAKNYVEATSRYHHFNSRIEGTPTSQLRQPLWSSCSCPHCPRHKSKGVDKQADEQ
FT KAQNV"
FT gene 278. .1048
FT /gene="AV1"
FT CDS 278. .1048
FT /codon_start=1
FT /gene="AV1"
FT /product="coat protein"
FT /protein_id="ABO40822.1"
FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYGARAVVPIARVTKAKAWT
FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVSHIGKVMCVSDVTRGTGLTHR
FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTGSPQDFGEVFNMFDNEP
FT STATVKNMHRDRYQVLRKWHATVTGGTYASKEQALVRKFVRVNNYVVYNQQEAGKYENH
FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN"
FT gene complement(308. .793)
FT /gene="AC5"
FT CDS complement(308. .793)
FT /codon_start=1
FT /gene="AC5"
FT /product="AC5"
FT /protein_id="ABO40823.1"
FT /translation="MHVLHRCGARFIVKHVEHFTKILWRSRRTTVTNQEKHHTVRVVFS
FT LYVFIHPYLPQYIHRFHTETLPHAMSQSGSSGNVTDTHDFANMRHIVPRFKRLHLTRTF
FT TSPWHVGASVHSIHSGLSVHRPVCPRLCFCDAGNGDNCTSSIRAVEVETSAYLRCGS"
FT gene complement(1045. .1455)
FT /gene="AC3"
FT CDS complement(1045. .1455)
FT /codon_start=1
FT /gene="AC3"
FT /product="replication enhancer protein"
FT /protein_id="ABO40824.1"
FT /translation="MITDSRTGEYITADRVESGVFIWDVPNPLYFKILKHDSRPCLTNH
FT DIIHLQIQFNHNLRKALGLHKCFLIFQIWTGLRPPTGIFLRVFKTQVLKYLHELGVIGI
FT SNVIRAAYHVLDNVLEKTIDVLPSCDVRINIY"
FT gene complement(1190. .1594)
FT /gene="AC2"
FT CDS complement(1190. .1594)
FT /codon_start=1
FT /gene="AC2"
FT /product="transcriptional activator protein"
FT /protein_id="ABO40825.1"
FT /translation="MQSSSHSKNHSIPVAKTSVPQKKKKNIRRRRVDLQCGCSYYISIN
FT CHDHGFTHRGVHHCGSSREWRVYLGRSKSPVFQNIETRQQTMPHESRHHPPPNTVQPQP
FT AESSGASQVFSNFPNLDGLTPSDWDFLEGI"
FT gene complement(1497. .2582)
FT /gene="AC1"
FT CDS complement(1497. .2582)
FT /codon_start=1
FT /gene="AC1"
FT /product="replication initiator protein"
FT /protein_id="ABO40826.1"
FT /translation="MAPPSRFRINAKNYFLTYPKCSLTKEEALSQLINLETPTCKKFIK
FT ICRESHEDGSPHIHVLIQFEGKYQCKNNRFFDLVSPTRSAHFHPNIQGAKSASDVKAYI
FT DKDGDVLEWGVFQIDGRSARGGQQTANDAYAQAINTGNKEDALKVLKELAPKDYVLQFH
FT NLMTNLDRIFQPRSEVYVSPFSTTSFDTVPPELVDWVQSNVLSAAARPFRPISVVIEGD
FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYNNEAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPVMIKGGIPTIFLCNKGPNSSYKEYLDEEKNASLKQWAIKNAVFVTLQEPL
FT YSGRENISPPEEEEEHTQEAS"
FT gene complement(2249. .2425)
FT /gene="AC4"
FT CDS complement(2249. .2425)
FT /codon_start=1
FT /gene="AC4"
FT /product="AC4"
FT /protein_id="ABO40827.1"
FT /translation="MGLRISMFSFNSKGNTSARITDSSTWYPQLGQHISIRTFRELNRR
FT PTSRHISTKTETC"
XX
SQ Sequence 2738 BP; 732 A; 563 C; 641 G; 802 T; 0 other;
ef450316 Length: 2738 27-MAR-2007 Type: N Check: 6689 ..
1 accgaatggc cgcgaaaatt ttggtgggcc ctcaaccaac gaaatgcaag
51 ctacatggct tatttagtgc ggggggacca ttaaatagcc ttgctgacga
101 agtttaggtc cacaaacatg tgggatccat tattgcacga atttcctgaa
151 agcgtgcatg gtctaaggtg catgctagct gtaaaatatc ttcaagagat
201 agagaagaac tattccccag acacagtggg ctacgatctt gtccgagatc
251 taattttagt agttcgagca aagaactatg tcgaagcgac cagcagatat
301 catcatttca actcccgcat cgaaggtacg ccgacgtctc aacttcgaca
351 gcccttatgg agctcgtgca gttgtcccca ttgcccgcgt cacaaaagca
401 aaggcgtgga caaacaggcc gatgaacaga aagcccagaa tgtatagaat
451 gtacagaagc cccgacgtgc caaggggatg tgaaggtcct tgtaaggtgc
501 agtcttttga atctaggcac gatgtgtctc atattggcaa agtcatgtgt
551 gtcagtgacg ttacccgagg aaccggactg actcatcgcg tggggaagcg
601 tttctgtgtg aaatctgtgt atgtattggg gaagatatgg atggatgaaa
651 acataaagac taaaaaccac acgaacagtg tgatgttttt cttggttcgt
701 gaccgtcgtc ctacgggatc gccacaggat tttggtgaag tgttcaacat
751 gtttgacaat gaaccgagca ccgcaacggt gaagaacatg catcgtgatc
801 gttatcaagt gttaaggaaa tggcatgcga ctgtgactgg agggacttat
851 gcatcgaagg agcaagcatt agttaggaag tttgttaggg ttaataatta
901 tgtcgtttat aatcaacaag aggccggaaa gtatgaaaat catactgaga
951 acgcattaat gttgtatatg gcctgtactc atgcatcaaa tcctgtgtat
1001 gctactttga aaatccggat ctatttttat gattcggtaa caaattaata
1051 tatattaatc cttacatcac atgatggcaa tacatcaata gtcttttcta
1101 aaacattatc caatacatga taggctgctc ttattacatt cgaaattcct
1151 attacaccaa gctcatggag gtatttaagg acctgtgtct taaataccct
1201 caagaaaatc ccagtcggag ggcgtaagcc cgtccagatt tggaaaatta
1251 gaaaacactt gtgaagcccc agagctttcc gcaggttgtg gttgaactgt
1301 atttggaggt ggatgatgtc gtgattcgtg aggcatggtc tgctgtcgtg
1351 tttcaatatt ttgaaataca ggggatttgg aacgtcccaa ataaacacgc
1401 cactctctac tcgatccgca gtgatgtact cccctgtgcg tgaatccgtg
1451 atcatgacag ttgattgata tgtagtacga acaaccacac tgcagatcaa
1501 ctcgcctcct gcgtatgttc ttcttcttct tctgggggac tgatgttttc
1551 gcgaccggaa tagagtggtt cttggagtgt gacgaagact gcattcttga
1601 tagcccactg tttcagtgat gcattttttt cttcgtcgag atattcctta
1651 tagctgctgt ttggtccttt attgcagagg aagatggtgg gaataccgcc
1701 tttaatcatg accggctttc cgtacttcgt attgctttgc cagtcacgct
1751 gggcccccat gaattcttta aagtgcttta gatagtgggg atcgacgtca
1801 tcaatgacgt tgtaccacgc ttcattattg tacactttcg ggctgagatc
1851 cagatgacca cacaagtaat tgtggggtcc tagtgaacgt gcccacattg
1901 tctttcccgt tctactatcc ccctctatta ctacgcttat tggtctaaaa
1951 ggccgcgcag cggcagacaa tacattggac tgaacccaat cgacgagttc
2001 tggaggaact gtgtcgaagg aagtagttga gaatggagat acatagacct
2051 cagaacgtgg ttgaaaaatg cgatctaaat tcgtcattaa attatggaac
2101 tgcagaacat aatcttttgg tgctagttct tttagtactt tcaatgcatc
2151 ttctttgttt ccggtgttaa ttgcctgagc gtatgcatcg tttgccgtct
2201 gttgaccccc acgagcagat cgtccgtcga tctggaaaac accccattct
2251 agcacgtctc cgtctttgtc gatatatgcc ttgacgtcgg acgccgattt
2301 agctccctga atgttcggat ggaaatgtgc tgaccgagtt ggggatacca
2351 agtcgaagaa tctgttattc ttgcactggt atttcccttc gaattgaatg
2401 agaacatgga tatgcggaga cccatcctcg tgactctctc tacagatttt
2451 gatgaatttc ttgcaagtag gggtttctag gtttattaat tgggaaagtg
2501 cctcttcctt tgtaagagag cattttgggt aagtgaggaa atagtttttg
2551 gcattaattc taaaacgact tggcggagcc atataaaatg tcgtttcgat
2601 ccggtgtctc tcaactttct ctatgtaatt ggtgtctgga gtcccatata
2651 tagttaggac accatatggc actattgtaa tttctgaaag taaattactt
2701 taattcaaat tgcgtaaagc ggccattcgt ataatatt