Sequence of DPV Wheat dwarf virus
Wheat dwarf virus - [Yunnan Kunming] isolate YNKM06-4, complete genome.
ACC No: EF536885
Dated: 2009-01-30 | Length: 2750 | CRC: 805006045
ID EF536885; SV 1; circular; genomic DNA; STD; VRL; 2750 BP.
XX
AC EF536885;
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DT 16-JUL-2007 (Rel. 92, Created)
DT 30-JAN-2009 (Rel. 99, Last updated, Version 2)
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DE Wheat dwarf virus - [Yunnan Kunming] isolate YNKM06-4, complete genome.
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KW .
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OS Wheat dwarf virus - [Yunnan Kunming]
OC Viruses; ssDNA viruses; Geminiviridae; Mastrevirus.
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RN [1]
RC Publication Status: Online-Only
RP 1-2750
RX PUBMED; 19094195.
RA Wu B., Melcher U., Guo X., Wang X., Fan L., Zhou G.;
RT "Assessment of codivergence of Mastreviruses with their plant hosts";
RL BMC Evol. Biol. 8:335-335(2008).
XX
RN [2]
RP 1-2750
RA Wu B., Wang X., Zhou G.;
RT "Diversity of Wheat Dwarf Virus in China";
RL Unpublished.
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RN [3]
RP 1-2750
RA Wu B., Wang X., Zhou G.;
RT ;
RL Submitted (09-MAR-2007) to the EMBL/GenBank/DDBJ databases.
RL Department of Pathology, Institute of Plant Protection, Chinese Academy of
RL Agricultural Sciences, No. 2 Yuanmingyuan Xilu, Haidian, Beijing 100094,
RL China
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FH Key Location/Qualifiers
FH
FT source 1. .2750
FT /organism="Wheat dwarf virus - [Yunnan Kunming]"
FT /isolate="YNKM06-4"
FT /mol_type="genomic DNA"
FT /country="China:Yunnan Kunming"
FT /db_xref="taxon:452669"
FT misc_feature join(2512. .2750,1. .170)
FT /note="long intergenic region"
FT gene 171. .443
FT /gene="v1"
FT CDS 171. .443
FT /codon_start=1
FT /gene="v1"
FT /product="movement protein"
FT /db_xref="GOA:A7KR37"
FT /db_xref="InterPro:IPR002621"
FT /db_xref="UniProtKB/TrEMBL:A7KR37"
FT /protein_id="ABS10973.1"
FT /translation="MEQAIAPPLPIRDYQYQTPSIPGSSDYAWRTFVFVTFGLLIAVGV
FT AWLAYTLFLKDLILVCKAKKQRRTEEIGYGNTPARLNGDQQGLPR"
FT gene 415. .1197
FT /gene="v2"
FT CDS 415. .1197
FT /codon_start=1
FT /gene="v2"
FT /product="coat protein"
FT /db_xref="GOA:A7KR46"
FT /db_xref="InterPro:IPR000143"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="UniProtKB/TrEMBL:A7KR46"
FT /protein_id="ABS10974.1"
FT /translation="MVTNKDSRGKGKRKMEEGESSGRWKGAVYKRRKQAYKVVPVKPPA
FT LCVFRYNWLNSDRTNVVVGNTPRVDLITCFAQGKADNNRHTNQTVLYKFNIQGTCYMSD
FT ASAPFIGPVRLYHWLVYDAEPKQAMPDATDIFTMPWNLLPSTWTVQRAWSQRFVVKRKW
FT TVTLVTDGRKVGSKTVDQRYNWVVGKNIVDASKFFKGLRVTTEWMNTGDGKIGDIKKGA
FT LYLISSTRGGVTGDSASTAFDVVCAYTHACYFKAIGIQ"
FT misc_feature 1198. .1369
FT /note="short intergenic region"
FT gene complement(1370. .2511)
FT /gene="rep"
FT CDS complement(join(1370. .1795,1882. .2511))
FT /codon_start=1
FT /gene="rep"
FT /product="replication-associated protein"
FT /db_xref="GOA:A7KR47"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="UniProtKB/TrEMBL:A7KR47"
FT /protein_id="ABS10975.1"
FT /translation="MSSSSTPRFRVYSKYLFLTYPQCTLEPQYALDSLRTLLNKYEPLY
FT IAAVRELHEDGSPHLHVLVQNKLRASITNPNALNLRMDTSPFSIFHPNIQAAKDCNQVR
FT DYITKEVDSDVNTAEWGTFVAVSTPGRKDRDADMKQIIESSSSREEFLSMVCSRFPFEW
FT SIRLKDFEYTARHLFPDPVATYTPEFPTESLICHETIESWKNEHLYSESPGRHKSIYIC
FT GPTRTGKTSWARSLGTHNYYNSLVDFTTYDVNAKYNIIDDIPFKFTPNWKCFVGAQRDF
FT TVNPKYGKRKVIRGGIPCIILVNPDEDWLKDMTPEQSDYMYSNAVVHYMYEGETFINYS
FT FASGEDVTASQ"
FT gene complement(1717. .2511)
FT /gene="repA"
FT CDS complement(1717. .2511)
FT /codon_start=1
FT /gene="repA"
FT /product="replication-associated protein A"
FT /db_xref="GOA:A7KR48"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="UniProtKB/TrEMBL:A7KR48"
FT /protein_id="ABS10976.1"
FT /translation="MSSSSTPRFRVYSKYLFLTYPQCTLEPQYALDSLRTLLNKYEPLY
FT IAAVRELHEDGSPHLHVLVQNKLRASITNPNALNLRMDTSPFSIFHPNIQAAKDCNQVR
FT DYITKEVDSDVNTAEWGTFVAVSTPGRKDRDADMKQIIESSSSREEFLSMVCSRFPFEW
FT SIRLKDFEYTARHLFPDPVATYTPEFPTESLICHETIESWKNEHLYSVSLESYILCTST
FT PADQAQSDLEWMDDYSRSHRGGISPSTSAGQPEQERLPGQGL"
XX
SQ Sequence 2750 BP; 713 A; 590 C; 734 G; 713 T; 0 other;
ef536885 Length: 2750 30-JAN-2009 Type: N Check: 1455 ..
1 accccgcgtg gtggcccccg acgcgcactc ggcttttcgt gagtgcgcgg
51 aggcttttgg accacatctt ttctgatcac tttcgtgaaa gatggtgatt
101 tatcacactt tcgatgtgga aatgtgtgcc atgccttagc ttataaggaa
151 gtgcgtggga gcccatctcg atggagcagg caatcgcccc cccgcttcct
201 atacgggact atcaatacca gaccccttcc attcccggtt cctccgacta
251 cgcctggcga acatttgtgt tcgttacctt cggtttgcta atagccgtag
301 gcgttgcttg gcttgcttac actctgtttc tgaaagattt aattttagtg
351 tgtaaggcga agaagcaaag gaggaccgag gaaattggtt acgggaatac
401 accggccaga ttaaatggtg accaacaagg actcccgagg taagggtaag
451 cggaagatgg aagaaggtga atccagcgga aggtggaagg gggctgtgta
501 taagcggcgt aaacaggcgt ataaggtagt acctgtgaag cccccagctc
551 tttgcgtatt ccgctacaac tggttgaata gcgacaggac caatgttgtt
601 gtgggtaata caccccgggt cgatctgatt acctgttttg ctcagggtaa
651 ggccgataat aatcggcata caaatcagac cgtcctatac aaatttaaca
701 tacagggtac ctgctatatg tccgatgcat cagctccgtt catcggtcca
751 gtccgcctct atcactggtt agtctatgat gcagagccaa aacaggcaat
801 gccagacgcc actgacatct ttacgatgcc ttggaatctg ctgccgagta
851 cgtggactgt gcaacgtgct tggtcgcaac gattcgtggt gaaaaggaag
901 tggaccgtga cccttgttac tgatggacgg aaggtcgggt ctaagaccgt
951 tgaccaacgc tacaactggg tagtcggcaa gaatatcgtg gacgcaagta
1001 agttcttcaa aggtttgcgt gtcacgacgg agtggatgaa cacgggtgac
1051 ggcaagatag gcgacattaa gaagggagct ctgtatctca ttagcagtac
1101 tcgtggtggt gttactggtg acagtgcctc tacggcgttt gatgttgtat
1151 gtgcctatac gcacgcgtgt tatttcaaag ccatcggcat tcagtaataa
1201 aataatattt tatttatctc atgtcattcg attacagagg ctcggctacg
1251 agcaaagaca aaccaaatta taacaaacaa caacccttac acaatgacat
1301 cggaaaagga aatacaacac cctgagatat tacatttata gaaactgtac
1351 gccgtccgcg ctaggacagt cactgcgaag cagtgacatc ttcgccggag
1401 gcgaacgagt agttgatgaa cgtctcgcct tcatacatgt agtgaacaac
1451 agcgttagag tacatgtaat ccgactgttc gggagtcata tccttgagcc
1501 aatcttcgtc tggattaact aaaatgatgc aaggtatgcc accccgtatc
1551 acttttcgct taccgtattt tggattgacc gtgaagtcac gctgagcccc
1601 gacgaagcac ttccagttgg gtgtgaactt aaatggaatg tcgtcgatga
1651 tattatactt ggcgttgacg tcatatgttg tgaagtcaac tagactgtta
1701 taataattat gtgtccctag agaccttgcc caggaagtct ttcctgttct
1751 ggttggcccg cagatgtaga tggacttatg cctccccggt gactcctgga
1801 ataatcgtcc atccactcta agtcagattg cgcttgatcc gcaggagtgg
1851 aagtacaaag gatataggat tcgaggctta cagagtatag atgttcattt
1901 ttccagcttt caatggtctc atggcatatg agtgattcgg ttggaaactc
1951 aggtgtgtaa gtggcaactg ggtcaggaaa tagatggcgt gccgtgtact
2001 cgaagtcttt gagacggata gaccattcaa acggaaaacg actgcaaacc
2051 atgctgagga attcctcgcg agaggaacta gattcaatga tttgtttcat
2101 atccgcatca cggtctttac gacctggagt tgaaacagcc acgaatgttc
2151 cccactcagc tgtgtttaca tcggagtcaa cctccttcgt gatgtaatca
2201 cgaacttggt tgcagtcttt ggcagcttgt atattaggat ggaatatgga
2251 gaatggagat gtatccatac ggaggtttaa ggcattggga ttggtgatgg
2301 aagcacgaag cttgttctgc acgagaacgt gcagatgtgg tgatccatct
2351 tcgtggagct ctctaacagc agcgatgtag aggggctcat atttgttcaa
2401 gagagtgcga agtgaatcca aggcgtactg tggctcaagg gtacattgag
2451 gatatgttag aaagaggtac ttggaataga ctcggaacct gggtgtagat
2501 gaagaggaca tggtagtgaa cagaagtccg gcaggtcctt agcgaaaaaa
2551 cggggtgtgc caaaaaactc tatgctctac cctgcgtgga ggtgtgaatt
2601 ctgcacactg caaatgaaat gtgtccaatg ttttatatag ggcaggtttt
2651 ggcgggaaaa cagggccctt gtgttcccac ggtagcgtag cgaatcgtgt
2701 gggccctgtt aggtgtgcgg tcgggggccc tccacgcggg ttataatatt