Sequence of DPV Beet soil-borne virus
Beet soil-borne virus isolate IM segment RNA 1, complete sequence.
ACC No: EF545138
Dated: 2008-07-12 | Length: 5834 | CRC: -518837606
ID EF545138; SV 1; linear; genomic RNA; STD; VRL; 5834 BP.
XX
AC EF545138;
XX
DT 12-JUL-2008 (Rel. 96, Created)
DT 12-JUL-2008 (Rel. 96, Last updated, Version 1)
XX
DE Beet soil-borne virus isolate IM segment RNA 1, complete sequence.
XX
KW .
XX
OS Beet soil-borne virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Pomovirus.
XX
RN [1]
RP 1-5834
RA Wang B., Li M., Han C., Li D., Yu J.;
RT "Complete Genome Sequences of Two Chinese Beet soil-borne virus Isolates
RT Provide Evidence that the Genome is Highly Conserved";
RL J. Phytopathol. 156(7-8):487-488(2008).
XX
RN [2]
RP 1-5834
RA Han C.;
RT ;
RL Submitted (10-APR-2007) to the EMBL/GenBank/DDBJ databases.
RL Plant Pathology, China Agricultural University, No.2 Yuanmingyuan West
RL Road, Haidian District, Beijing 100094, China
XX
CC GenBank Accession Numbers EF545138, EF545140, and EF545142
CC represent the complete genome of Beet soil-borne virus isolate IM.
XX
FH Key Location/Qualifiers
FH
FT source 1. .5834
FT /organism="Beet soil-borne virus"
FT /segment="RNA 1"
FT /specific_host="sugar beet"
FT /isolate="IM"
FT /mol_type="genomic RNA"
FT /country="China:Inner Mongolia"
FT /virion
FT /db_xref="taxon:46436"
FT 5'UTR 1. .129
FT CDS 130. .5466
FT /codon_start=1
FT /transl_except=(pos:3940. .3942,aa:OTHER)
FT /product="204 kDa protein"
FT /note="replicase; contains methyltransferase, helicase, and
FT RNA-dependent RNA polymerase domains; putative readthrough
FT protein"
FT /protein_id="ABU63610.1"
FT /translation="MESTNILTQINRDDIIQAVLTTSASRTQSALHETLCRVIDDNIKN
FT ALKANTKKKTIDVKRNLSEEQVQYLCELYPERKIITSNSERGTHSMAAAMRKIETDLVL
FT SLFPKNSVIYDIGGNWATHAKCNDGRIVHCCCPILDYRDAQRKMTRMLNFHKFTSDSSE
FT IPPDIKEKAEMIAEDNAIITANVREGDLNSSALNGRWFCQNKFEDCVFDPRDILMGKTA
FT KDNVMVYAMAIHSIYDINVYELATALQRKGIKRMVGTFLFSVDMLLGRKSGELPSVNGF
FT YKLEGEYIKYGFYDDPNCGYRHKFSSLKAYLTKTFVKAANGSVFYLELTDLRGDVMYFT
FT MTDATEARASGIMKDESFKCIPVDAKNKVVFPLFVVDETTDTLMFLERVLPKDFVHRAI
FT EYVNRCKENQLTVESIVSYLSSTNNAVIIGGSARKVEEKVDPSLLPMIASTLLVYSEMQ
FT RAKQKTVIQKLRIHVKNTVTIGDLLNHAFHKVFGAVGVGQWALQSFARWLKFFHGSGVI
FT EMNDLFMYVEIEDRIRLWSKKSREHEFFLTFDDLTEKSRLHEEYNEERRRISDKIIKEK
FT GLSSKDLSLEEDKEKTVDEILAWMEKSEDLKASELRSKLIGIRKNRARVDKRKFGEAHQ
FT VNTAVLQRFIEADDDHFSTCALNTPGKWWVDVLGEFLGKTLSEVCATNIVFSDIEPNDN
FT AEGFDTVEYADRDDMASDVETSISQCVESNDECVDEDGYSCDGDSKVEHSTLNSNYGAL
FT TPPPREEVKDSEEGVDVTVEDVSTDIIESHCDGRWALMAEDSDFAIDQKRSEALNIMEV
FT RYAKLPSKPDYLESDDFRMRAKKEFIWYLECKLVSDKSAMTDIVRDYVYNMYHNSLCEF
FT PKNSCFLSYEGDDNGNWVWGRKPVRLGHAYAVHFYAADWKTNCRLVSLSWNKDEEGNFV
FT GDKPVISTNSGVYMLCDLTFLMNEMIILKNLQFSLKTRFQKHIPHVTLIDGVPGCGKST
FT HIVKEARLENQYVLTMGREAAAELRERFKTVRGSTEEQLKRVRTVDSFLMNDKDSRAKV
FT LHFDEALMAHAGMVYFCADNLSARTIICQGDSQQIPFINRVESITLEYAKLEITNVVEK
FT RLTYRSPLDVACFLTRKNFYGHFHCYERKSNGRSMSVVGPRDGMTSNYSIPKKKGAQYL
FT TFTQSEKEDMVRYLGKGQWSVNTVHESQGKTYDDVILVRLKPTDNEIYPGGRKSKPYVV
FT VGTTRHRRSLVYYTRAEDILYRDITEMMSVQEGKLHKHLFTESTQXRCGSKYESITVSD
FT RPVSVPDVGAVEDLQVMYDIAFPGNSVIETYFDGYDVATGGLEIDIANIKYYPNKQRRM
FT WQEVRGLTPALRTAMPEKRQSGLIESVLALNKRNMAAPKLQESVNEFEIIENVISKAKT
FT VFFDEKFIDASPMNSVSNCQKWWDKQSVTAQKQMLADTRIISEIDLCTYNFMIKNDVKP
FT KLDLSPQSEYSALQTVVYPDKIVNAIFGPVMKEINERILLALRPHVVYNTRMTAEELDR
FT SVEFLDVREQYDAVEIDFSKFDKSKTSLHIRAVIELYKIFGLDDMLAFLWEKSQCQTTI
FT RDRQNGLIAHILYQQKSGNCDTYGSNTWSAALALLDALPLERAKFMVFGGDDSLVFFPK
FT NMNLADPCGRLASLWNFDCKFFNFQNNMFCGKFLLKIGENYKFAPDPFKLLTKLGRKDI
FT KNDILLSEIFISISDNYRSYHDYRVLEALNVAVVERYKLSQDVLFGLCALKKYLFNFDL
FT FRTLFSYKGKLHCTNVSRNFEW"
FT CDS 130. .3942
FT /codon_start=1
FT /product="145 kDa protein"
FT /note="replicase; contains methyltransferase and helicase
FT domains"
FT /protein_id="ABU63611.1"
FT /translation="MESTNILTQINRDDIIQAVLTTSASRTQSALHETLCRVIDDNIKN
FT ALKANTKKKTIDVKRNLSEEQVQYLCELYPERKIITSNSERGTHSMAAAMRKIETDLVL
FT SLFPKNSVIYDIGGNWATHAKCNDGRIVHCCCPILDYRDAQRKMTRMLNFHKFTSDSSE
FT IPPDIKEKAEMIAEDNAIITANVREGDLNSSALNGRWFCQNKFEDCVFDPRDILMGKTA
FT KDNVMVYAMAIHSIYDINVYELATALQRKGIKRMVGTFLFSVDMLLGRKSGELPSVNGF
FT YKLEGEYIKYGFYDDPNCGYRHKFSSLKAYLTKTFVKAANGSVFYLELTDLRGDVMYFT
FT MTDATEARASGIMKDESFKCIPVDAKNKVVFPLFVVDETTDTLMFLERVLPKDFVHRAI
FT EYVNRCKENQLTVESIVSYLSSTNNAVIIGGSARKVEEKVDPSLLPMIASTLLVYSEMQ
FT RAKQKTVIQKLRIHVKNTVTIGDLLNHAFHKVFGAVGVGQWALQSFARWLKFFHGSGVI
FT EMNDLFMYVEIEDRIRLWSKKSREHEFFLTFDDLTEKSRLHEEYNEERRRISDKIIKEK
FT GLSSKDLSLEEDKEKTVDEILAWMEKSEDLKASELRSKLIGIRKNRARVDKRKFGEAHQ
FT VNTAVLQRFIEADDDHFSTCALNTPGKWWVDVLGEFLGKTLSEVCATNIVFSDIEPNDN
FT AEGFDTVEYADRDDMASDVETSISQCVESNDECVDEDGYSCDGDSKVEHSTLNSNYGAL
FT TPPPREEVKDSEEGVDVTVEDVSTDIIESHCDGRWALMAEDSDFAIDQKRSEALNIMEV
FT RYAKLPSKPDYLESDDFRMRAKKEFIWYLECKLVSDKSAMTDIVRDYVYNMYHNSLCEF
FT PKNSCFLSYEGDDNGNWVWGRKPVRLGHAYAVHFYAADWKTNCRLVSLSWNKDEEGNFV
FT GDKPVISTNSGVYMLCDLTFLMNEMIILKNLQFSLKTRFQKHIPHVTLIDGVPGCGKST
FT HIVKEARLENQYVLTMGREAAAELRERFKTVRGSTEEQLKRVRTVDSFLMNDKDSRAKV
FT LHFDEALMAHAGMVYFCADNLSARTIICQGDSQQIPFINRVESITLEYAKLEITNVVEK
FT RLTYRSPLDVACFLTRKNFYGHFHCYERKSNGRSMSVVGPRDGMTSNYSIPKKKGAQYL
FT TFTQSEKEDMVRYLGKGQWSVNTVHESQGKTYDDVILVRLKPTDNEIYPGGRKSKPYVV
FT VGTTRHRRSLVYYTRAEDILYRDITEMMSVQEGKLHKHLFTESTQ"
FT 3'UTR 5464. .5834
XX
SQ Sequence 5834 BP; 1718 A; 934 C; 1364 G; 1818 T; 0 other;
ef545138 Length: 5834 12-JUL-2008 Type: N Check: 2197 ..
1 gtattatttt ctcaactgtt atttaccaaa gagaagattt ttataccatt
51 aattttgaga agtctgcttt ttagcaataa atcttttcat attattggtt
101 tgtcttttca tttttacgaa tattctacga tggaatctac aaacattctg
151 acgcaaatta atcgtgatga tataattcag gccgtattaa ctacaagtgc
201 gagtaggact cagtctgctt tacatgaaac tttgtgtagg gtgattgatg
251 ataatattaa gaatgctctt aaagctaaca caaaaaagaa aacaattgac
301 gtgaaacgaa acttgtctga agaacaggtt cagtatttat gtgagcttta
351 tcctgaaaga aaaataatta catccaattc tgaacgtggt actcatagta
401 tggctgcggc tatgcgaaaa attgaaacgg atttagtttt gtcactgttt
451 cctaagaata gcgttatata tgatattggt ggtaattggg cgacgcacgc
501 taagtgtaat gatggaagga tagtgcattg ttgctgtcca atattggatt
551 atcgtgatgc gcagaggaag atgacgcgga tgttaaactt tcataagttt
601 accagcgatt cttctgagat acctcctgat atcaaagaaa aagcggagat
651 gatagccgag gataacgcca ttataactgc aaatgtgcgg gaaggtgatc
701 tgaattcttc tgctttgaac ggacgttggt tttgccaaaa caagtttgaa
751 gactgtgttt ttgatccgcg tgacattttg atgggtaaga ctgctaagga
801 taatgtaatg gtttatgcca tggcaattca cagtatttat gatataaatg
851 tttatgaatt ggctacggcg ttacagcgaa aaggaataaa gcggatggta
901 ggtacttttc tgttttctgt ggacatgttg cttggaagaa aaagtggtga
951 attgccatct gttaacgggt tttataagtt ggaaggtgaa tatataaaat
1001 acgggtttta cgacgatcca aattgcggtt acagacataa gttttcttcg
1051 cttaaggctt acttaacaaa gacttttgtt aaagcagcga atggttccgt
1101 gttttacctg gagttaactg atttaagggg tgacgtaatg tactttacta
1151 tgacagatgc tacagaggcg cgggcttccg gtattatgaa agatgagtcg
1201 ttcaagtgca ttccagtgga cgcaaaaaac aaggtagttt ttcctttgtt
1251 tgttgtggat gaaaccactg acacacttat gtttctcgaa cgcgtattac
1301 caaaagattt cgtgcatcgc gctattgagt atgttaatcg ttgcaaagag
1351 aatcagttaa cggttgaaag tattgttagt tatttgtcgt ctactaataa
1401 tgccgtgata attggtgggt ctgcgagaaa agtggaagag aaggtggatc
1451 cttctttgct accgatgatc gcctccactt tgttagttta cagtgaaatg
1501 cagagagcta aacagaagac tgttattcaa aagctgagaa ttcatgtgaa
1551 gaatacagtt actattggtg atttgttgaa ccacgctttc cataaggtgt
1601 tcggcgccgt tggtgtcggt cagtgggcgc tgcagagctt tgctagatgg
1651 ttaaagtttt ttcacggctc aggggttatc gagatgaatg acctttttat
1701 gtacgtggag attgaagacc gtattaggtt atggtctaag aaatctcgag
1751 agcacgaatt cttcctaacc tttgatgatc tgacagaaaa aagtcgtttg
1801 cacgaagagt acaacgaaga gcgacgtagg atttctgaca agatcattaa
1851 ggaaaaaggt ttgagttcta aagacctttc tttggaagaa gataaggaaa
1901 agacggtaga tgaaattctg gcctggatgg agaaatctga agatttgaag
1951 gcttcggaat tgcgttctaa gttaataggg attcgaaaga atcgtgcacg
2001 tgttgataaa cgaaagtttg gtgaggcgca tcaggtaaat acggctgtat
2051 tgcagaggtt tatcgaagcg gatgacgatc acttttccac gtgtgcttta
2101 aatactccag gcaagtggtg ggttgatgtc ctgggtgaat ttttaggaaa
2151 gacattatca gaggtttgtg ctactaatat tgttttttct gatatagaac
2201 ccaatgataa cgctgaaggt tttgatactg ttgaatatgc tgatagagac
2251 gatatggcta gcgatgtcga aacgtcgatt agtcagtgcg tcgagtccaa
2301 cgatgagtgt gtagacgaag atggttacag ttgcgacggt gattccaaag
2351 ttgagcattc tactttaaac agtaattatg gtgcgttgac gccacctcct
2401 agagaagagg taaaagattc agaggagggc gttgatgtga cagttgaaga
2451 cgtatctacg gatataattg agtcgcattg tgatggaaga tgggctttga
2501 tggcggaaga ttctgatttc gccattgacc agaagcgatc cgaggcgcta
2551 aatattatgg aagttagata cgctaaatta ccgtctaaac cagattactt
2601 agaaagtgat gattttagaa tgcgggcaaa gaaagagttt atctggtact
2651 tagaatgtaa gttggtttca gataagtctg caatgactga tattgtgcga
2701 gattatgttt ataacatgta ccataacagt ctttgcgagt ttccgaaaaa
2751 ttcttgcttt ctaagttacg aaggtgatga caacggtaat tgggtttggg
2801 gcaggaaacc ggttaggttg ggccacgctt acgctgttca cttttatgcc
2851 gctgattgga agactaactg tcgacttgta agtttgtcat ggaacaaaga
2901 cgaggaagga aatttcgttg gcgataagcc cgttatttct accaattccg
2951 gagtttacat gctatgcgat ttgacatttt taatgaatga aatgatcatt
3001 ttgaaaaatt tgcagttttc gttgaagacc aggtttcaga agcatattcc
3051 acacgttaca cttattgatg gtgtacctgg gtgtggtaaa tcaactcata
3101 ttgttaaaga agctagactg gaaaaccagt acgtactcac tatgggtcga
3151 gaagcagctg cagagttgcg agagcgattt aaaactgtac gcggttcgac
3201 cgaggaacag ttgaaaagag tgcggactgt tgattctttt ttgatgaacg
3251 ataaggactc tagggccaaa gttttgcatt tcgacgaggc attgatggcg
3301 catgctggta tggtttactt ttgtgcagat aatttgtctg ctcggacaat
3351 tatttgtcaa ggtgattctc agcagatacc atttattaac cgcgttgaat
3401 ccataacttt ggaatacgcc aagttggaaa taactaacgt ggtggagaaa
3451 agacttacct atcgttcccc tttggacgtt gcctgttttc tgacaagaaa
3501 aaatttttat gggcacttcc actgttatga gcgcaaatcc aacggacgtt
3551 ctatgagcgt tgttggtccc cgagatggca tgacgtctaa ctacagtatt
3601 cctaagaaga aaggtgctca atacctcact tttactcaaa gtgagaagga
3651 agacatggtc cgttacctgg gtaagggaca gtggtctgta aacactgtac
3701 atgaaagtca aggaaaaact tacgatgatg ttatattagt taggttgaag
3751 cccactgata atgaaattta tcctggtggg cggaaatcaa aaccttacgt
3801 cgtagttggc actacgcggc atagacgcag tttagtgtac tacacacgtg
3851 ctgaggacat tctgtacaga gacataactg aaatgatgag tgtgcaagaa
3901 ggaaaattgc acaaacattt gttcacggag agtactcaat aacggtgtgg
3951 gtcgaagtac gagtcgataa ccgtttccga tcgtccggta agtgttcctg
4001 acgttggagc tgttgaagat ttgcaggtta tgtatgacat tgcttttcct
4051 ggcaattcgg ttattgagac gtatttcgac gggtacgatg ttgcgacggg
4101 aggtttagaa atagatattg ctaatataaa atattatccc aacaagcaaa
4151 ggcgaatgtg gcaagaagtt cgcggactta cacctgcttt gcgaactgct
4201 atgccggaga aaaggcagag cggtttgata gagagcgttc tggcgcttaa
4251 taagagaaat atggctgctc ctaagttaca ggaatcggtt aacgaattcg
4301 agattattga gaatgtcatt tctaaggcta aaactgtttt cttcgatgag
4351 aaatttattg atgcatctcc gatgaactcc gtatcaaatt gtcaaaaatg
4401 gtgggataaa cagtcagtga ccgcgcagaa acagatgtta gcggatacta
4451 gaattatatc cgaaattgac ttgtgcacat ataacttcat gataaaaaat
4501 gatgttaagc ctaagttgga tttgtcacca cagtcggagt attctgcatt
4551 acaaacagtt gtctatccgg ataaaattgt taatgctatt tttggtcctg
4601 tgatgaagga gataaacgaa agaatattgt tagcgttgcg gcctcatgtt
4651 gtgtataaca caaggatgac agccgaagaa ctagatagat ccgtcgaatt
4701 tctcgacgtt cgcgaacaat acgatgctgt tgagattgat ttttctaaat
4751 ttgataaatc aaaaacttct ttacacatta gggcagtgat agaattatac
4801 aagatctttg gtcttgacga tatgttagcc tttttatggg agaagtcaca
4851 atgtcagact acaattcgtg atcgtcagaa tggactgatt gcgcatatac
4901 tttatcaaca aaaatctggt aactgtgata catacggttc taatacttgg
4951 tcggctgctc ttgctctttt ggatgcgtta ccacttgagc gagctaagtt
5001 catggtattt ggcggtgatg attctcttgt gtttttccca aaaaatatga
5051 atttggctga cccttgtggt aggttggctt ctctttggaa tttcgattgt
5101 aaatttttta actttcaaaa caacatgttt tgtggtaagt ttcttttaaa
5151 gattggagaa aattataagt ttgcgccgga tccttttaaa ttacttacaa
5201 aacttggtag gaaagatata aaaaacgata ttttgcttag tgaaattttt
5251 atttctataa gcgataatta ccgttcttat catgactaca gagttttaga
5301 agctttaaac gtggcggtcg tcgaacgtta taaattatct caagacgttt
5351 tgttcggttt gtgtgcttta aaaaaatact tgtttaactt tgatttattc
5401 cgcacacttt tctcttataa aggcaaatta cactgcacta acgtgagtag
5451 aaattttgaa tggtaaaatt tctttggttc tccgttttgt gagtctaaga
5501 tcattatttt gtgtaatttg gtgtgaagag atacagtcta ttcgtacttg
5551 taaatgatta tttgagctga tcactcaacg tggatttcac gatagaaatc
5601 ggtgtttttc attccaccta aatcgaaatg tactacggta gcgcgaacct
5651 tatcgcgcag tgttttgaag tccacttaaa tagaacttct ttccacggtc
5701 tctttcgcta ctgaattaat tataaaaact tcagtattcg atttatgcag
5751 atgagagtag tatctctcga tcatcaagac acgatgattc tgtggggtgc
5801 aaatcccccc ctttacttga gggaaatcaa gccc