Sequence of DPV Beet soil-borne virus
Beet soil-borne virus isolate XJ segment RNA 1, complete sequence.
ACC No: EF545139
Dated: 2008-07-12 | Length: 5834 | CRC: 569715107
ID EF545139; SV 1; linear; genomic RNA; STD; VRL; 5834 BP.
XX
AC EF545139;
XX
DT 12-JUL-2008 (Rel. 96, Created)
DT 12-JUL-2008 (Rel. 96, Last updated, Version 1)
XX
DE Beet soil-borne virus isolate XJ segment RNA 1, complete sequence.
XX
KW .
XX
OS Beet soil-borne virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Pomovirus.
XX
RN [1]
RP 1-5834
RA Wang B., Li M., Han C., Li D., Yu J.;
RT "Complete Genome Sequences of Two Chinese Beet soil-borne virus Isolates
RT Provide Evidence that the Genome is Highly Conserved";
RL J. Phytopathol. 156(7-8):487-488(2008).
XX
RN [2]
RP 1-5834
RA Han C.;
RT ;
RL Submitted (10-APR-2007) to the EMBL/GenBank/DDBJ databases.
RL Plant Pathology, China Agricultural University, No.2 Yuanmingyuan West
RL Road, Haidian District, Beijing 100094, China
XX
CC GenBank Accession Numbers EF545139, EF545141, and EF545143
CC represent the complete genome of Beet soil-borne virus isolate XJ.
XX
FH Key Location/Qualifiers
FH
FT source 1. .5834
FT /organism="Beet soil-borne virus"
FT /segment="RNA 1"
FT /specific_host="sugar beet"
FT /isolate="XJ"
FT /mol_type="genomic RNA"
FT /country="China:Xinjiang"
FT /virion
FT /db_xref="taxon:46436"
FT 5'UTR 1. .129
FT CDS 130. .5466
FT /codon_start=1
FT /transl_except=(pos:3940. .3942,aa:OTHER)
FT /product="204 kDa protein"
FT /note="replicase; contains methyltransferase, helicase, and
FT RNA-dependent RNA polymerase domains; putative readthrough
FT protein"
FT /protein_id="ABU63612.1"
FT /translation="MESTNILTQINRDDIIQAVLTTSASRTQSALHETLCRVIDDNIKN
FT ALKANTKKKTIDVKRNLSEEQVQYLCELYPERKIITSNSERGTHSMAAAMRKIETDLVL
FT SLFPKNSVIYDIGGNWATHAKCNDGRKVHCCCPILDYRDAQRKMTRMLNFHKFISDSSE
FT IPPDIREKAEMIAEDNAIITANVREGDLNSSALNGRWFCQNKFEDCVFDPRDILMGKTA
FT KDNVMVYAMAIHSIYDINVYELATALQRKGIKRMVGTFLFSVDMLLGRKSGELPSVNGF
FT YKLEGEYIKYGFYDDPNCGYRHKFSSLKAYLTKTFVKAANGSVFYLELTDLRGDVMYFT
FT MTDATEARASGIMKDESFKCIPVDAKNKVVFPLFVVDETTDTLMFLERVLPKDFVHRAI
FT EYVNRCKENQLTVESIVSYLSSTNNAVIIGGSARKVEEKVDPSLLPMIASTLLVYSEMQ
FT RAKQKTVIQKLRIHVKNTVTIGDLLNHAFHKVFGAVGVGQLALQSFARWLKFFHGSGVI
FT EMNDLYMYVEIEDRIRLWSKKSREHEFFLTFDDLTEKSRLYEEYNEERRRISDKIIKEK
FT GLSSKDLSLEEDKEKTVDEILAWMEKSEDLKASELRSKLIGIRKNRARVDKRKFGEAHQ
FT VNTAVLQRFIEADDDHFSTCALNTPGKWWVDVLGEFLGKTLSEVCATNTVFSDMEPNDN
FT TEGLDTVEYADRDDMASDVETSISQCVESNDECVDQDGYSCDGDSKVEHSTLNSNYGAL
FT TPPPREEVKDSEEGVDVTVENVSTDIIESHCDGRWALMAEDSDFAIDQKRSEALNIMEV
FT RYAKLPPKPDYLESDDFRMRAKKEFIWYLECKLVSDKSAMTDIVRDYVYNMYHNSLCEF
FT PKNSCFLSYEGDDNGNWVWGRRPVRLGHAYAVHFYAADWKTDCRLVSLSWSKDEEGNFV
FT GDKPVISTNSGVYMLCDLTFLMNEMIILKNLQFSLKTRFQKHIPHVTLIDGVPGCGKST
FT HIVKEARLENQYVLTMGREAAAELRERFKTVRGSTEEQLKRVRTVDSFLMNDKDSRAKV
FT LHFDEALMAHAGMVYFCADNLSARTIICQGDSQQIPFINRVESITLEYAKLEITNVVEK
FT RLTYRSPLDVACFLTRKNFYGHFHCYERKSNGRSMSVVGPRDGMTSNYSIPKKKGAQYL
FT TFTQSEKEDMVRYLGKGQWSVNTVHKSQGKTYDDVILVRLKPTDNEIYPGGRKSKPYVV
FT VGTTRHRRSLVYYTRAEDILYRDITEMMSVQEGKLHKHLFTESTQXRCGSKYESITVSD
FT RPVSVPDVGAVEDLQVMYDIAFPGNSVIETYFDGYDVATGGLEIDIANIKYYPNKQRRM
FT WQEVRGLTPALRTAMPEKRQSGLIESVLALNKRNMAAPKLQESVNEFEIIENVISKAKT
FT AFFDEKFIDASPMNSVSNCQKWWDKQSVTAQKQMLADTRIISEIDLCTYNFMIKNDVKP
FT KLDLSPQSEYSALQTVVYPDKIVNAIFGPVMKEINERILLALRPHVVYNTRMTAEELDR
FT SVEFLDVREQYDAVEIDFSKFDKSKTSLHIRAVIELYKIFGLDDMLAFLWEKSQCQTTI
FT RDRQNGLIAHILYQQKSGNCDTYGSNTWSAALALLDALPLERAKFMVFGGDDSLVFFPK
FT NMNLADPCGRLASLWNFDCKFFNFQNNMFCGKFLLKIGENYKFAPDPFKLLTKLGRKDI
FT KNDILLSEIFISISDNYRSYHDYRVLEALNVAVVERYKLSQDVLFGLCALKKYLFNFDL
FT FRTLFSYKGKLHCTNVSRNFEW"
FT CDS 130. .3942
FT /codon_start=1
FT /product="145 kDa protein"
FT /note="replicase; contains methyltransferase and helicase
FT domains"
FT /protein_id="ABU63613.1"
FT /translation="MESTNILTQINRDDIIQAVLTTSASRTQSALHETLCRVIDDNIKN
FT ALKANTKKKTIDVKRNLSEEQVQYLCELYPERKIITSNSERGTHSMAAAMRKIETDLVL
FT SLFPKNSVIYDIGGNWATHAKCNDGRKVHCCCPILDYRDAQRKMTRMLNFHKFISDSSE
FT IPPDIREKAEMIAEDNAIITANVREGDLNSSALNGRWFCQNKFEDCVFDPRDILMGKTA
FT KDNVMVYAMAIHSIYDINVYELATALQRKGIKRMVGTFLFSVDMLLGRKSGELPSVNGF
FT YKLEGEYIKYGFYDDPNCGYRHKFSSLKAYLTKTFVKAANGSVFYLELTDLRGDVMYFT
FT MTDATEARASGIMKDESFKCIPVDAKNKVVFPLFVVDETTDTLMFLERVLPKDFVHRAI
FT EYVNRCKENQLTVESIVSYLSSTNNAVIIGGSARKVEEKVDPSLLPMIASTLLVYSEMQ
FT RAKQKTVIQKLRIHVKNTVTIGDLLNHAFHKVFGAVGVGQLALQSFARWLKFFHGSGVI
FT EMNDLYMYVEIEDRIRLWSKKSREHEFFLTFDDLTEKSRLYEEYNEERRRISDKIIKEK
FT GLSSKDLSLEEDKEKTVDEILAWMEKSEDLKASELRSKLIGIRKNRARVDKRKFGEAHQ
FT VNTAVLQRFIEADDDHFSTCALNTPGKWWVDVLGEFLGKTLSEVCATNTVFSDMEPNDN
FT TEGLDTVEYADRDDMASDVETSISQCVESNDECVDQDGYSCDGDSKVEHSTLNSNYGAL
FT TPPPREEVKDSEEGVDVTVENVSTDIIESHCDGRWALMAEDSDFAIDQKRSEALNIMEV
FT RYAKLPPKPDYLESDDFRMRAKKEFIWYLECKLVSDKSAMTDIVRDYVYNMYHNSLCEF
FT PKNSCFLSYEGDDNGNWVWGRRPVRLGHAYAVHFYAADWKTDCRLVSLSWSKDEEGNFV
FT GDKPVISTNSGVYMLCDLTFLMNEMIILKNLQFSLKTRFQKHIPHVTLIDGVPGCGKST
FT HIVKEARLENQYVLTMGREAAAELRERFKTVRGSTEEQLKRVRTVDSFLMNDKDSRAKV
FT LHFDEALMAHAGMVYFCADNLSARTIICQGDSQQIPFINRVESITLEYAKLEITNVVEK
FT RLTYRSPLDVACFLTRKNFYGHFHCYERKSNGRSMSVVGPRDGMTSNYSIPKKKGAQYL
FT TFTQSEKEDMVRYLGKGQWSVNTVHKSQGKTYDDVILVRLKPTDNEIYPGGRKSKPYVV
FT VGTTRHRRSLVYYTRAEDILYRDITEMMSVQEGKLHKHLFTESTQ"
XX
SQ Sequence 5834 BP; 1719 A; 930 C; 1368 G; 1817 T; 0 other;
ef545139 Length: 5834 12-JUL-2008 Type: N Check: 4206 ..
1 gtattatttt ctcaacggtt atttaccaaa gagaagattt ctataccatt
51 aattttgaga agtctgcttt ttagcaataa atcttttcat attattggtt
101 tgtcttttta tttttacgaa aattctacga tggaatctac aaacattctg
151 acgcaaatta atcgtgatga tataattcag gccgtattaa ctacaagtgc
201 gagtaggact cagtctgctt tacatgaaac tttgtgtagg gtgattgatg
251 ataatattaa gaatgctctt aaagctaaca caaaaaagaa aacaattgat
301 gtgaaacgaa acttgtctga agaacaggtt cagtatttat gtgagcttta
351 tcctgaaaga aaaataatta catctaattc tgaacgtggt actcatagta
401 tggctgcggc tatgcgaaaa attgaaacgg atttagtttt gtcactgttt
451 cctaagaata gcgttatata tgatattggt ggtaattggg cgacgcacgc
501 taagtgtaat gatggaagga aagtgcattg ttgctgtccg atattggact
551 atcgtgatgc gcagaggaag atgacgcgga tgttaaactt tcataagttt
601 atcagcgatt cttctgagat acctcctgat atcagagaaa aagcggagat
651 gatagccgag gataacgcca ttataactgc aaatgtgcgg gaaggtgatc
701 tgaattcttc tgctttgaac ggacgttggt tttgccaaaa caagtttgaa
751 gactgtgttt ttgatccgcg tgacattttg atgggtaaga ctgctaagga
801 taatgtaatg gtttatgcca tggcaattca cagtatttat gatataaatg
851 tttatgaatt ggctacggcg ttacagcgaa aaggaataaa gcggatggta
901 ggtacttttc tgttttctgt ggacatgttg cttggaagaa aaagtggtga
951 attgccatct gttaacgggt tttataagtt ggaaggtgaa tatataaaat
1001 acgggtttta cgacgatcca aattgcggtt acagacataa gttttcttcg
1051 cttaaggctt acttaacaaa gacttttgtt aaagcagcga atggttccgt
1101 gttttacctg gagttgactg atttaagggg tgacgtaatg tattttacta
1151 tgacagatgc tacagaggcg cgggcttccg gtattatgaa agatgagtcg
1201 ttcaagtgca ttccagtgga cgcaaaaaac aaggtagttt ttcctttgtt
1251 tgttgtagat gaaaccactg acacacttat gtttctcgaa cgcgtattgc
1301 caaaagattt cgtgcatcgc gctattgagt atgttaatcg ttgcaaagag
1351 aatcagttaa cggttgaaag tattgttagt tatttgtcgt ctactaataa
1401 tgccgtgata attggtgggt ctgcgagaaa agtggaagag aaggtggatc
1451 cttctttgct accgatgatc gcctccactt tgttagttta cagtgaaatg
1501 cagagagcta aacagaagac tgttattcaa aagctgagaa ttcatgtgaa
1551 gaatacagtt actattggtg atttgttgaa ccacgctttc cataaggtgt
1601 tcggcgccgt tggtgtcggt cagttggcgc tgcagagctt tgctagatgg
1651 ttaaaatttt ttcacggctc aggggttatc gagatgaatg acctttatat
1701 gtacgtggag attgaagacc gtattaggtt atggtctaag aaatctcgag
1751 agcacgaatt cttcctaacc tttgatgatc tgacagaaaa aagtcgtctg
1801 tacgaagagt acaacgaaga gcgacgtagg atttctgaca agatcattaa
1851 ggaaaaaggt ttgagttcta aagacctttc tttggaagaa gataaggaaa
1901 agacggtaga tgaaattctg gcctggatgg agaaatctga agatttgaag
1951 gcttcggaat tgcgttctaa gttaataggg attcgaaaga atcgtgcacg
2001 tgttgataaa cgaaagtttg gtgaggcgca tcaggtaaat acggctgtat
2051 tgcagaggtt tatcgaagcg gatgacgatc acttttccac gtgtgcttta
2101 aatactccag gcaagtggtg ggttgatgtc ctgggtgaat ttttaggaaa
2151 gacattatca gaggtttgtg ctactaatac tgttttttct gatatggaac
2201 ccaatgataa cactgaaggt ttagatactg ttgaatatgc tgatagagac
2251 gatatggcta gcgatgtcga aacgtcgatt agtcagtgcg tcgagtccaa
2301 cgatgagtgt gtagaccaag atggttacag ttgcgacggt gattccaaag
2351 ttgagcattc tactttaaac agtaattatg gtgcgttgac gccgcctcct
2401 agagaagagg tgaaagattc agaggagggc gttgatgtga cagttgaaaa
2451 cgtatctacg gatataattg agtcacattg tgatggaaga tgggcattga
2501 tggcggaaga ttctgatttc gccattgacc agaagcgatc cgaggcgcta
2551 aatattatgg aagttagata tgctaaatta ccacctaaac cagattactt
2601 agaaagtgat gattttagaa tgcgggcaaa gaaagagttt atctggtact
2651 tagaatgtaa gttagtttca gataagtctg cgatgactga tattgtgcga
2701 gattatgttt ataacatgta ccataacagt ctttgcgagt ttccgaaaaa
2751 ttcttgcttt ctaagttacg aaggtgatga caacggtaat tgggtttggg
2801 gcaggagacc ggttaggttg ggccacgctt acgctgttca cttttatgcc
2851 gctgattgga agactgactg tcgacttgta agtttgtcat ggagcaaaga
2901 cgaggaagga aatttcgttg gcgataagcc cgttatttct actaattccg
2951 gagtttacat gctatgcgat ttgacatttt taatgaatga aatgatcatt
3001 ttgaaaaatt tgcagttttc gttgaagacc aggtttcaga agcatattcc
3051 acacgttaca cttattgatg gtgtacctgg gtgtggtaaa tcaactcata
3101 ttgttaaaga agctagactg gaaaaccagt acgtactcac tatgggtcga
3151 gaagcagctg cagagttgcg agagcgattt aaaactgtac gcggttcgac
3201 cgaagaacag ttgaaaagag tgcggactgt tgattctttt ttgatgaacg
3251 acaaggactc tagggccaaa gttttgcatt tcgacgaggc gttgatggcg
3301 catgctggta tggtttactt ttgtgcagat aatttgtctg ctcggacaat
3351 tatttgtcaa ggtgattctc agcagatacc atttattaac cgcgttgaat
3401 ccataacttt ggaatacgcc aagttggaaa taactaacgt ggtggagaaa
3451 agacttacct atcgttcccc tttggacgtt gcctgttttc tgacaaggaa
3501 aaatttttat gggcacttcc actgttatga gcgcaaatcc aacggacgtt
3551 ctatgagcgt tgttggtccc cgagatggca tgacgtctaa ctacagtatt
3601 cctaagaaga aaggtgctca atacctcact tttactcaaa gtgagaagga
3651 agacatggtc cgttacctgg gtaagggaca gtggtctgta aacaccgtac
3701 ataaaagcca aggaaaaact tacgatgatg ttatattagt taggttaaaa
3751 cctactgata atgaaattta tcctggtggg cggaaatcaa aaccttacgt
3801 cgtagttggt actacgcggc atagacgcag tttagtgtac tacacacgtg
3851 ctgaggatat tctgtacaga gatataactg aaatgatgag tgtgcaagaa
3901 ggaaaattgc acaaacattt gttcacggag agtactcaat aacggtgtgg
3951 gtcgaagtac gagtcgataa ccgtttccga tcgtccggta agtgttcctg
4001 acgttggagc tgttgaagat ttgcaggtta tgtatgacat tgcttttcct
4051 ggcaattcgg ttattgagac gtatttcgac gggtacgatg ttgcgacggg
4101 aggtttagaa atagatattg ctaatataaa atattatccc aacaagcaaa
4151 ggcgaatgtg gcaagaagtt cgcggactta cacctgcttt gcgaactgct
4201 atgccggaga aaaggcagag cggtttgata gagagcgttc tggcgcttaa
4251 taagagaaat atggctgctc ctaagttaca ggaatcggtt aacgaattcg
4301 agattattga gaatgtcatt tctaaggcta aaactgcttt cttcgatgag
4351 aaatttattg atgcatctcc gatgaactcc gtatcaaatt gtcaaaaatg
4401 gtgggataaa cagtcagtga ccgcgcagaa acagatgttg gcggatacta
4451 gaattatatc cgaaattgac ttgtgcacat ataacttcat gataaaaaat
4501 gatgttaagc ctaagttgga tttgtcgcca cagtcggagt attctgcatt
4551 acaaacagtt gtctatccgg ataaaattgt taatgctatt tttggtcctg
4601 tgatgaagga gataaacgaa agaatattgt tagcgttgcg gcctcatgtt
4651 gtgtataaca caaggatgac agccgaagaa ctagatagat ccgtcgaatt
4701 tctcgacgtt cgcgaacaat acgatgctgt tgagattgat ttttctaaat
4751 ttgataaatc aaaaacttct ttacacatta gggcagtgat agaattatac
4801 aagatctttg gtcttgacga tatgttagcc tttttatggg agaagtcaca
4851 atgtcagact acaattcgtg atcgtcagaa tggactgatt gcgcatatac
4901 tttatcaaca aaagtctggt aactgtgata catacggttc taatacttgg
4951 tcggccgctc ttgctctttt ggatgcgtta ccacttgagc gagctaagtt
5001 catggtattt ggcggtgatg attcccttgt gttttttcca aaaaatatga
5051 atttggctga cccttgtggt aggttggctt ctctttggaa tttcgattgt
5101 aaatttttta actttcaaaa caacatgttt tgtggtaagt ttcttttaaa
5151 gattggagaa aattataagt ttgcaccgga tccttttaaa ttacttacaa
5201 aacttggtag gaaagatata aaaaacgata ttttgcttag tgaaattttt
5251 atttctataa gcgataatta ccgttcttat catgactaca gagttttaga
5301 agctttaaac gtggcggtcg tcgaacgtta taaattatct caagacgttt
5351 tgtttggttt gtgtgcttta aaaaaatact tgtttaactt tgatttattc
5401 cgcacacttt tctcttataa aggcaaatta cactgcacta acgtgagtag
5451 aaattttgaa tggtaaaatt tctttggttc tccgttttgt gagtctaaga
5501 tcattatttt gtgtaatttg gtgtgaagag atacagtcta tttgtacttg
5551 taaatgatta tttgagctga tcactcaacg tggatttcac gatagaaatc
5601 ggtgtttttc attccaccta aatcgaaatg tactacggta gcgcgaacct
5651 tatcgcgcag tgttttgaag tccacttaaa tagaacttct ttccatggtc
5701 gctttcgcta ctgaattaat tataaaaact tcagtattcg atttatgcag
5751 atgagagtag tatctctcga tcatcaagac acgatgattc tgtggggtgc
5801 aaatcccccc ctttacttga gggaaatcaa gccc