Sequence of DPV Beet soil-borne virus
Beet soil-borne virus isolate IM segment RNA 2, complete sequence.
ACC No: EF545140
Dated: 2008-07-12 | Length: 3454 | CRC: -1827652037
ID EF545140; SV 1; linear; genomic RNA; STD; VRL; 3454 BP.
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AC EF545140;
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DT 12-JUL-2008 (Rel. 96, Created)
DT 12-JUL-2008 (Rel. 96, Last updated, Version 1)
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DE Beet soil-borne virus isolate IM segment RNA 2, complete sequence.
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KW .
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OS Beet soil-borne virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Pomovirus.
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RN [1]
RP 1-3454
RA Wang B., Li M., Han C., Li D., Yu J.;
RT "Complete Genome Sequences of Two Chinese Beet soil-borne virus Isolates
RT Provide Evidence that the Genome is Highly Conserved";
RL J. Phytopathol. 156(7-8):487-488(2008).
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RN [2]
RP 1-3454
RA Han C.;
RT ;
RL Submitted (10-APR-2007) to the EMBL/GenBank/DDBJ databases.
RL Plant Pathology, China Agricultural University, No.2 Yuanmingyuan West
RL Road, Haidian District, Beijing 100094, China
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CC GenBank Accession Numbers EF545138, EF545140, and EF545142
CC represent the complete genome of Beet soil-borne virus isolate IM.
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FH Key Location/Qualifiers
FH
FT source 1. .3454
FT /organism="Beet soil-borne virus"
FT /segment="RNA 2"
FT /specific_host="sugar beet"
FT /isolate="IM"
FT /mol_type="genomic RNA"
FT /country="China:Inner Mongolia"
FT /virion
FT /db_xref="taxon:46436"
FT 5'UTR 1. .382
FT CDS 383. .3178
FT /codon_start=1
FT /transl_except=(pos:875. .877,aa:OTHER)
FT /product="104K protein"
FT /note="readthrough protein"
FT /protein_id="ABU63614.1"
FT /translation="MVDPRYEGWNQREAIRAKKRRFVSYDTFMDLIVNWREVRVGIIEH
FT SATILSQVSRLGEANFYGRNKRFGRVDTNGDVFYVDLSEARIRKILDNIIIALQTTSGE
FT GRAKRLGKEASTTAGAEDSALNVAHQLAELAELMASDQFIEDACFTREKFEHEVGLRWV
FT EXQSTAPPVKVDVRAEIDCINNRMKAAARLGLLPGQERHGDAKQTINYDDLDFALNRVA
FT GNLLPQTLALERCVESVPETFKDSEDRIDIKGGNPVGETVAKSLIDSHDVKVKKDIGVD
FT GDGLAWVLAAIFAFLSMLFFSLMCFGSRRFLRLAIRREGKPGGGTMMFLSRIFTNIRYR
FT LRDRAVRLVSRMRYSKRSRYSRSDMRRYLNDYKFSYIPWVADDFMSSDDKKVVADQNAF
FT VEAVKLVDEGDTDLVLDAVKRVKEIIQDYLSFTPDFLEIIEMKAAFVVSRKVSIINVPE
FT ERDILNLQDKAFDPISCGMPDVQQCSMEEVIKFDLQEVNCGATDDQTSLKSYVDLLRGL
FT QYMFSLVGTVKFIAVYMAYSGKQYKCVAEAYASDLEMRKSSVDSATNGTVEKEKSSYVD
FT EMCLALAILFAMPAFISLIKSGGVVFRYFTHGGGPAARRRLRESLNELDNLEFQNRLNR
FT LREGAEDLGERSESSSTIEAFERRLEMLREGDDTGNEGNVAVDEIRSDTAPGTNTLPNA
FT SFNVGSAPISGLAVIPCIGFPDSASEQRFARTQGKLLRSVRNDNDFISRSTPEQQIETV
FT FRRDAADTLSNGSSFSSVVLDSDETFSMEKLEVLNKNSYSEVPGEMFTIMKGENVSHAT
FT VKLGNEDVVVVNADTDSPTVIAANSLSKLHKDKGIEFGTFNKEKILQISSANIESSDKT
FT VSSSKTNNTVRDFTKVLKVIGMAGGRKSSKPGAAKAASSSSSVEVATSTEAMKTPMRQL
FT I"
FT CDS 383. .877
FT /codon_start=1
FT /product="19K protein"
FT /note="coat protein"
FT /protein_id="ABU63615.1"
FT /translation="MVDPRYEGWNQREAIRAKKRRFVSYDTFMDLIVNWREVRVGIIEH
FT SATILSQVSRLGEANFYGRNKRFGRVDTNGDVFYVDLSEARIRKILDNIIIALQTTSGE
FT GRAKRLGKEASTTAGAEDSALNVAHQLAELAELMASDQFIEDACFTREKFEHEVGLRWV
FT E"
FT 3'UTR 3179. .3454
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SQ Sequence 3454 BP; 970 A; 583 C; 863 G; 1038 T; 0 other;
ef545140 Length: 3454 12-JUL-2008 Type: N Check: 3669 ..
1 ggtaatttta cttcttcgcc gtttatttaa cacagaagaa gaaaaaattt
51 ccaatttttt gttgcataga taaaacatac ggacaggtat cggtgttttt
101 gaagtgtaac ttaaaatcgg tttttatagt attattggtg tacaggcagg
151 tccgagcact aatatttacc atataaactg tattgcgttg acggaggcgt
201 aagaaaaact atactttcgt ttgattcgct cgatttggcg agtaaaatat
251 aaatcatatc cggtaataat tgatccattt tccagtctac gtacctctat
301 tgaggagcgt gctattggag gtataactcg tagtgatcaa gcgccgagac
351 gtgttgcaat tcccattacg tcatctatta agatggttga tccgcggtat
401 gaagggtgga accaacgtga ggctataaga gccaagaagc gaaggtttgt
451 atcttacgat acttttatgg atttaatcgt taattggcga gaggtgcggg
501 tcggtattat agagcactcc gctactatac tgtcgcaggt tagtaggttg
551 ggggaagcaa atttttacgg acgtaataag cgcttcggaa gagttgacac
601 taacggtgac gttttttatg ttgatttgag tgaggccagg ataagaaaaa
651 ttttagataa cataattatt gctttacaga ctacttccgg tgaaggacgc
701 gctaaacgat taggaaagga ggcgagcacg acagcaggcg cagaagatag
751 cgctctgaat gtggcacatc aactcgccga gctagccgag cttatggcct
801 ccgatcagtt tattgaagac gcttgcttca cgagagaaaa gtttgagcat
851 gaagttggtt tgcgctgggt tgaatagcaa tcaactgctc cgccggttaa
901 agtggatgta cgtgctgaaa ttgattgtat taacaatcga atgaaagcag
951 cggcgcgttt aggtctacta ccggggcagg agcgacacgg tgacgcgaaa
1001 caaactataa attatgatga tctggatttt gctttgaata gggttgctgg
1051 taatttgtta ccgcagactt tggctttgga gcggtgcgtt gagtccgttc
1101 ctgaaacttt taaagattca gaggaccgaa ttgacataaa aggcggtaat
1151 cccgtcggtg aaacggttgc gaaatctctg attgattctc atgacgttaa
1201 ggtcaaaaag gatataggag ttgacgggga tggtttagcc tgggttttgg
1251 cggctatttt cgcttttctt tctatgttgt ttttctcctt gatgtgtttt
1301 gggagtagga ggtttctgcg tctggcgatt cgacgtgagg gtaaacctgg
1351 gggaggtacg atgatgtttt tatcaagaat ttttacaaac attagatatc
1401 gtctgagaga tcgcgctgtg aggcttgtct cgcggatgcg gtattctaaa
1451 cgctcgaggt atagtcgtag cgatatgcga cgttatctta atgattataa
1501 attcagttac ataccttggg ttgccgatga ttttatgagt agcgacgata
1551 agaaggttgt ggcagatcag aatgcttttg tggaagctgt taagcttgtg
1601 gacgaaggtg acactgattt ggtattagat gcagtaaaac gtgttaagga
1651 aataatccaa gactatttga gttttactcc cgactttctt gaaatcattg
1701 agatgaaagc ggcctttgtg gtgtcgagga aggttagcat tattaacgtt
1751 ccggaagagc gcgacatact taatctccag gataaagctt ttgatcctat
1801 ttcctgcggc atgcctgatg tacaacaatg cagtatggag gaggtgataa
1851 agtttgatct acaggaggta aattgtggcg ccactgatga tcaaacgtcg
1901 ttaaaatcat atgtcgatct actaagagga ttgcagtata tgttttcact
1951 tgtaggtacg gtgaagttta tagctgtgta tatggcttat tctgggaaac
2001 aatacaagtg tgtggccgaa gcttacgcta gcgatttaga aatgagaaaa
2051 tcgtccgtag actccgccac gaacggtact gttgagaaag aaaaatcttc
2101 ttatgtagat gagatgtgtt tagcgttagc aattttattt gcgatgccag
2151 ctttcatttc tctgattaaa tcaggaggtg ttgtttttcg ctattttacc
2201 cacggaggag gcccggcagc gcgtagacgc ttaagggaat ctcttaatga
2251 gttggataat ttagagtttc aaaaccgttt gaatcgtctt cgcgaaggcg
2301 ctgaggattt gggagagcgt tcagagtcat cgtctaccat agaagctttt
2351 gaaagacgtt tggaaatgtt gagggaagga gatgatactg ggaatgaagg
2401 caacgttgct gtggatgaaa ttcgtagcga caccgcccct ggtaccaaca
2451 ccttgccgaa cgcatctttt aatgtcggtt cagctcctat tagtggttta
2501 gctgttatac cttgcattgg ttttccggac agtgcgtcgg agcaacgttt
2551 tgctcggact caaggcaaac ttttgaggag tgtaaggaat gacaacgatt
2601 ttataagtcg tagtactcct gaacagcaga tcgagacggt gtttcgacgg
2651 gatgctgcgg acacgttatc taacggctcc agtttttctt ccgtagtttt
2701 agactcggat gaaacattta gcatggaaaa attagaagtt ctaaataaga
2751 attcgtatag tgaagtgcct ggtgaaatgt tcactattat gaagggtgag
2801 aatgtatctc acgctacggt taagcttgga aacgaagatg tggttgtggt
2851 gaatgctgat acagattctc ctacagttat agctgcgaat tcgttatcca
2901 aacttcataa agataaaggc atcgagttcg gaacttttaa caaagagaag
2951 atattacaaa tttccagtgc taacattgag agttcggata aaacagtgtc
3001 ttcatcaaaa accaataaca cagtacgtga ctttactaaa gttttgaagg
3051 ttattggaat ggctggtggc agaaaatctt ccaaaccggg agcagcgaaa
3101 gctgcttctt cttcgtctag cgttgaagta gctacgtcga cggaagctat
3151 gaaaactccc atgagacaat tgatttaaat tgttcttggg ttttatgatt
3201 aattattatt attaatttta aataaaaaat gattatttgg cgtgatcaac
3251 caacgtgggt tatacgataa taaccggtgc ttttatgttc accgaaatcg
3301 aacatacgtt ttatagacct gcagtcgcta ttaagataat taacaaaaac
3351 ttaatatttg acttatgtag gtgagagtag tttctctcgg tcatcatcac
3401 acgatgatcc tgtggggtgc aaatcccccc cttaacttga gggaaatcaa
3451 gccc