Sequence of DPV Beet soil-borne virus
Beet soil-borne virus isolate IM segment RNA 3, complete sequence.
ACC No: EF545142
Dated: 2008-07-12 | Length: 3005 | CRC: -120124362
ID EF545142; SV 1; linear; genomic RNA; STD; VRL; 3005 BP.
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AC EF545142;
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DT 12-JUL-2008 (Rel. 96, Created)
DT 12-JUL-2008 (Rel. 96, Last updated, Version 1)
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DE Beet soil-borne virus isolate IM segment RNA 3, complete sequence.
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KW .
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OS Beet soil-borne virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Pomovirus.
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RN [1]
RP 1-3005
RA Wang B., Li M., Han C., Li D., Yu J.;
RT "Complete Genome Sequences of Two Chinese Beet soil-borne virus Isolates
RT Provide Evidence that the Genome is Highly Conserved";
RL J. Phytopathol. 156(7-8):487-488(2008).
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RN [2]
RP 1-3005
RA Han C.;
RT ;
RL Submitted (10-APR-2007) to the EMBL/GenBank/DDBJ databases.
RL Plant Pathology, China Agricultural University, No.2 Yuanmingyuan West
RL Road, Haidian District, Beijing 100094, China
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CC GenBank Accession Numbers EF545138, EF545140, and EF545142
CC represent the complete genome of Beet soil-borne virus isolate IM.
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FH Key Location/Qualifiers
FH
FT source 1. .3005
FT /organism="Beet soil-borne virus"
FT /segment="RNA 3"
FT /specific_host="sugar beet"
FT /isolate="IM"
FT /mol_type="genomic RNA"
FT /country="China:Inner Mongolia"
FT /virion
FT /db_xref="taxon:46436"
FT 5'UTR 1. .404
FT CDS 405. .1688
FT /codon_start=1
FT /product="48K protein"
FT /note="triple gene block protein; putative cell to cell
FT movement protein"
FT /protein_id="ABU63618.1"
FT /translation="MEKEKLQKKEKNLNRRTNKKGVRRLDRKNSEGKTKEDNSKSVKED
FT VADDLVAHESVAKDRAATCERGKSQRQRVDQETSVKEGAGVDSKLGSDRYAGKRQLEVV
FT SRICQESGFVATGKPLKRYPEDYFLKSGLLADFDKYLSDRLDKGCNLTKSETVTVLKHL
FT RQKREPQSFLAGSVTGVPGSGKTTLLRKIQTEAGLNSVVILANERHKIRFTQLPACYTA
FT KEILLLRTAIKYDVLLIDEYTLLQNGEILLLQRILEAKVVVLFGDRAQGNSRTADSPEW
FT LQIPVIYSSVKSRRFGKATADFCGKQGFDFEGCDQEDEVQKLDFEGSSPETDINLALTE
FT ATIEDLKEVGIECSLVKDVQGNEYDSVSLFIREEDRAALSDPELRSVAFTRHRKLLIVR
FT IPVCLMLSLFNGELNPDYRPQTNHYGEN"
FT CDS 1675. .2025
FT /codon_start=1
FT /product="13K protein"
FT /note="triple gene block protein; putative cell to cell
FT movement protein"
FT /protein_id="ABU63619.1"
FT /translation="MVRTNEIGARPNKYWPIVVGVFAIALFSFLTITNQKHATESGDNI
FT HKFSNGGKFQDGNKRVHYNKNNPRAYNGSSSNNTFSKLLLPGLFLAAVMYAYVQYRKPQ
FT CTVTCRGECAHG"
FT CDS 1889. .2461
FT /codon_start=1
FT /product="22K protein"
FT /note="triple gene block protein; putative cell to cell
FT movement protein"
FT /protein_id="ABU63620.1"
FT /translation="MDPPAIIHSQNCCCPDCSWQPSCTHTSNTENLNARSPVEENARTV
FT RGYSADYVIMCVIVSVSLGFAIAAYFYSSGGHYDPDAAIFKQDLNEVQINFGKHPIDPK
FT VIEAVHHWQRAPFGRFQGESVDVSKNFFEDSVDEDDEEERAEVNKEEVTKEKSKVAVCN
FT RLCSIRNSLLRLFWIITLIIIVVKCRF"
FT 3'UTR 2462. .3005
XX
SQ Sequence 3005 BP; 905 A; 501 C; 671 G; 928 T; 0 other;
ef545142 Length: 3005 12-JUL-2008 Type: N Check: 7155 ..
1 ggtatttttt tttcttgccg gtcgcttgtg atcaattaga aaaaacttat
51 cataaataat cttgtatggg tacatatcag ccggttttaa ccaattgttt
101 gtaccttgta ctctggatta ttttaataaa aacactatta gacgtgtttc
151 ttcaatttga aatttttgat ttcgaataat ttattcttag gtatcctctt
201 cttcttacaa gtcaccgctt tttggcatcg acttgctaga agttttgaag
251 acctttaaga ttgttttatt cggtttcggg acctcaattt gaagtttttc
301 gttttatatc gcaaaagtaa aacccaagct agtaaaaact tttcttatca
351 ccgtttcttg acacagattc gataagttta tgttattttg cgttttactt
401 atttatggaa aaggagaagt tgcagaagaa ggagaaaaat cttaatcgca
451 ggactaacaa gaagggggtc aggcgcttag ataggaaaaa ctccgaaggg
501 aaaactaagg aagacaatag taagtcagta aaagaagacg ttgcggacga
551 tcttgtggca cacgagagtg ttgcgaaaga tcgtgcagct acttgcgaga
601 ggggtaagtc acagcgacaa cgtgttgatc aggagacttc agtcaaagaa
651 ggggctggtg tggattctaa actaggttcc gacagatacg cgggtaagag
701 acaacttgaa gttgtgtcgc gaatttgtca ggaaagtggt tttgttgcaa
751 ccggaaaacc gttaaaacgc tatccagagg attatttctt gaaatccggc
801 ttgttggccg acttcgataa atacttaagt gataggttgg ataaaggctg
851 taatttaacc aagtcagaaa cggtaacagt tcttaagcac ctgcgacaga
901 aaagggagcc tcagtctttt cttgctggaa gtgttaccgg cgtacctggt
951 agtggaaaaa ccactttgct tagaaaaatt caaaccgaag cgggtttgaa
1001 ctccgttgtt atattggcta acgaacgtca caaaatacgt tttacacagt
1051 tgcctgcttg ttatacagct aaagaaatat tgttgttgag aacggcaatt
1101 aagtacgacg ttttgttaat agacgagtat acgttgttgc agaacggtga
1151 aattttgtta ctgcaacgta tactagaagc gaaagtagtg gtgctattcg
1201 gtgacagagc gcaaggcaac tcccgtactg cggacagtcc agagtggttg
1251 cagattccag ttatttactc ttctgttaag agtagacgtt ttggaaaggc
1301 taccgcggat ttttgcggca aacagggttt tgattttgag ggttgtgacc
1351 aggaggacga agtgcagaaa ttagatttcg aagggtcgtc acctgagaca
1401 gacatcaatt tagcgctgac cgaagctact attgaggatt tgaaagaagt
1451 tgggatagag tgttctttgg ttaaagacgt tcaaggcaac gaatacgatt
1501 ccgtttctct ttttattaga gaagaggatc gtgcggcact atccgatcca
1551 gagttaagaa gtgttgcgtt tacgaggcat agaaagctgc taatagttcg
1601 tatccccgtt tgtttaatgc tttcactgtt taacggtgag ttgaatccgg
1651 actatcgacc gcaaaccaac cattatggtg agaactaatg agatcggcgc
1701 tagacctaat aagtattggc caatagtcgt aggtgtattt gcaattgcgt
1751 tgttcagttt tttaactata actaatcaga aacacgccac agagtcggga
1801 gataatatcc acaagttttc taacggtgga aaatttcaag acggcaataa
1851 gcgtgttcat tataataaga ataatcctag agcttataat ggatcctcca
1901 gcaataatac attctcaaaa ctgttgttgc ccggattgtt cttggcagcc
1951 gtcatgtacg catacgtcca ataccgaaaa cctcaatgca cggtcacctg
2001 tagaggagaa tgcgcgcacg gttagaggtt atagtgctga ctatgttatc
2051 atgtgtgtga tagtgagtgt atctttaggt ttcgcaatcg cagcgtattt
2101 ttattcatcg ggagggcatt acgatcctga cgcggcaatc tttaaacaag
2151 atttaaatga agttcaaatt aacttcggaa agcatccaat tgacccgaaa
2201 gtgattgaag cagtccatca ttggcaacgt gctcctttcg gacgttttca
2251 gggtgaaagc gtggatgtga gtaaaaactt ttttgaagat tccgtagatg
2301 aagatgatga agaggaacga gccgaggtga ataaagaaga agtaacgaaa
2351 gaaaaatcta aagttgctgt atgtaatcgc ttgtgttcta ttaggaatag
2401 cttattaagg ttattttgga taatcacctt aataataata gtggtaaagt
2451 gtcgtttcta agtctttctt tttaaagttt ttaaactttt ctttctcttt
2501 cgactactca aaaatttaaa atgattaatc gtactgatca tacggcgcgg
2551 attatgcgaa aataattagt agtgcgcgct aattacttta aaatgtggtg
2601 caactttatg tgaaatatac aaatttttct gtttatttaa cgttaagaag
2651 atatgaaatc tcccataact atgttatggt ttctcgcata tccttttaac
2701 gctaacttta tagaaacgtt tgtatgtttt tgtttaagct ataaataaag
2751 tagcttgtat cggtgtgcga caataataaa gtttttctca aacttataaa
2801 tgagacgtgg cgaatacgat aattcgtagt gtttgtggat aacactttaa
2851 ttaagattca tattgcggtt cgcagtcatt actaagataa ttataaaaaa
2901 cttagtatct gacctatgcg gatgagacga gttagtctcg accattttca
2951 cacaatggtt ctgaggggtg caactccccc ccttaactag agggaaatct
3001 agccc