Sequence of DPV Beet soil-borne virus
Beet soil-borne virus isolate XJ segment RNA 3, complete sequence.
ACC No: EF545143
Dated: 2008-07-12 | Length: 3005 | CRC: 595973983
ID EF545143; SV 1; linear; genomic RNA; STD; VRL; 3005 BP.
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AC EF545143;
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DT 12-JUL-2008 (Rel. 96, Created)
DT 12-JUL-2008 (Rel. 96, Last updated, Version 1)
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DE Beet soil-borne virus isolate XJ segment RNA 3, complete sequence.
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KW .
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OS Beet soil-borne virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Pomovirus.
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RN [1]
RP 1-3005
RA Wang B., Li M., Han C., Li D., Yu J.;
RT "Complete Genome Sequences of Two Chinese Beet soil-borne virus Isolates
RT Provide Evidence that the Genome is Highly Conserved";
RL J. Phytopathol. 156(7-8):487-488(2008).
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RN [2]
RP 1-3005
RA Han C.;
RT ;
RL Submitted (10-APR-2007) to the EMBL/GenBank/DDBJ databases.
RL Plant Pathology, China Agricultural University, No.2 Yuanmingyuan West
RL Road, Haidian District, Beijing 100094, China
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CC GenBank Accession Numbers EF545139, EF545141, and EF545143
CC represent the complete genome of Beet soil-borne virus isolate XJ.
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FH Key Location/Qualifiers
FH
FT source 1. .3005
FT /organism="Beet soil-borne virus"
FT /segment="RNA 3"
FT /specific_host="sugar beet"
FT /isolate="XJ"
FT /mol_type="genomic RNA"
FT /country="China:Xinjiang"
FT /virion
FT /db_xref="taxon:46436"
FT 5'UTR 1. .404
FT CDS 405. .1688
FT /codon_start=1
FT /product="48K protein"
FT /note="triple gene block protein; putative cell to cell
FT movement protein"
FT /protein_id="ABU63621.1"
FT /translation="MEKEKLQKKEKNLNRRTNKKGVRRLDKKNSEGKTKEDNSKSVKED
FT VADDLVAHESVAKDRAATCERGKSQRQRVDQETSVKEGAGVDSKLGSDRYAGKRQLEVV
FT SRICQESGFVATGKPLKRYPEDYFLKSGLLADFDKYLSDRLDKDCNLTKSETVTVLKHL
FT RQKRKPQSFLAGSVTGVPGSGKTTLLRKIQTEAGLNSVVILANERHKIRFTQLPACYTA
FT KEILLLRTAIKYDVLLIDEYTLLQNGEILLLQRILEAKVVVLFGDRAQGNSRTADSPEW
FT LQIPVIYSSVKSRRFGKATADFCGKQGFDFEGCDQEDEVQKLDFEGSSPETDINLALTE
FT ATIEDLKEVGIECSLVKDVQGNEYDSVSLFIREEDRAALSDPELRSVAFTRHRKLLIVR
FT IPVCLMLSLFNGELNSDYRPQTNHYGKN"
FT CDS 1675. .2025
FT /codon_start=1
FT /product="13K protein"
FT /note="triple gene block protein; putative cell to cell
FT movement protein"
FT /protein_id="ABU63622.1"
FT /translation="MVRTNEIGARPNKYWPIVVGVFAIALFSFLTITNQKHATESGDNI
FT HKFSNGGKFQDGNKRVHYNKNNPRAYNGSSSNNTFSKLLLPGLFLAAVMYAYVQYRKPQ
FT CTVTCRGECAHG"
FT CDS 1889. .2461
FT /codon_start=1
FT /product="22K protein"
FT /note="triple gene block protein; putative cell to cell
FT movement protein"
FT /protein_id="ABU63623.1"
FT /translation="MDPPAIIHSQNCCCPDCSWQPSCTHTSNTESLNARSPVEENARTV
FT RGYSADYVIMCVIVSVSLGFAIAAYFYSSGGHYDPDAAIFRQDLNEVQINFGKHPIDPK
FT VIEAVHHWQRAPFGRSQGESVDVSKNFFEDSVDEDDEEERAEVNKDEVTMKKSKFAVCN
FT RLCSIRNSLLRLFWIITLIIIVVKCRS"
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SQ Sequence 3005 BP; 896 A; 501 C; 674 G; 934 T; 0 other;
ef545143 Length: 3005 12-JUL-2008 Type: N Check: 599 ..
1 ggtatttttt tttcttgccg gtcgcttgtg atcaataaga aaaaacttat
51 cataaataat cttgtatggg tacatatcag ccggttttaa ccaattgttt
101 gtaccttgta ctttggatta ttttaataaa aacactattg gacgtgtttc
151 ttcaatttga agtttttgat ttcgaataat ttattcttag gtatcctttt
201 cttcttacaa gtcaccgctt tttggcatcg acttgctaga agttttgaag
251 acctttaaga ttgttttatt cggtttcggg acctcaattt gaagtttttc
301 gtttcgtatc gcaaaagtaa aacccgaact agtaaaaact tttcttatcg
351 ccgtttcttg acacagattc gataagttta tgttattttg cgttttactt
401 atttatggaa aaggagaagt tgcagaagaa ggagaaaaat cttaatcgca
451 ggactaacaa gaagggggtc aggcgcttag ataagaaaaa ctccgagggg
501 aaaactaagg aagacaatag taagtcagta aaagaagacg ttgcggacga
551 tcttgtggca cacgagagtg ttgcgaaaga tcgtgcagct acttgcgaga
601 ggggtaagtc acagcgacaa cgtgttgatc aggagacttc agttaaagaa
651 ggggctggtg tggattctaa actgggttcc gacagatacg caggtaagag
701 acaacttgaa gttgtgtcgc gaatttgtca ggaaagtggt tttgttgcaa
751 ccggaaaacc gttaaaacgc tatccagagg attatttctt gaaatccggc
801 ttgttggccg atttcgataa atacttaagt gataggttgg ataaagactg
851 taatttaacc aagtcagaaa cggtaacagt tcttaagcac ctgcgacaga
901 aaaggaaacc tcagtctttt cttgctggaa gtgttaccgg cgtacctggt
951 agtggaaaaa ccactttgct tagaaaaatt caaactgaag cgggtttgaa
1001 ctctgttgtt atattggcta acgaacgtca caaaatacgt tttacacagt
1051 tgcctgcttg ttatacagct aaagaaatat tgttgttgag aacggcaatt
1101 aagtacgacg ttttgttaat agacgagtat acgttgttgc agaacggtga
1151 aattttgtta ctgcaacgta tactagaagc gaaagtagtg gtgctattcg
1201 gtgacagagc gcaaggcaac tcccgtactg cggacagtcc agagtggttg
1251 cagattccag ttatttactc ttctgttaag agtagacgtt ttggaaaggc
1301 taccgcggat ttttgcggca aacagggttt tgattttgag ggttgtgacc
1351 aggaggacga agtgcagaaa ttagatttcg aggggtcgtc acctgagacg
1401 gacatcaatt tagcgctgac cgaagctact attgaggatt tgaaagaagt
1451 tgggatagag tgttctttgg ttaaagacgt tcaaggcaac gaatacgatt
1501 ccgtttctct tttcattaga gaagaggatc gtgcggcact atccgatcca
1551 gagttgagaa gtgttgcgtt tacgaggcat agaaagctgc taatagttcg
1601 tatccccgtt tgtttaatgc tttcactgtt taacggtgag ttgaattcgg
1651 actatcgacc gcaaaccaac cattatggta agaactaatg agatcggcgc
1701 cagacctaat aagtattggc caatagtcgt aggtgtattt gcaattgcgt
1751 tgttcagttt tttaactata actaatcaga aacacgccac agagtcggga
1801 gataatatcc acaagttttc taacggtgga aaatttcaag acggcaataa
1851 gcgcgttcat tataataaga ataatcctag agcttataat ggatcctcca
1901 gcaataatac attctcaaaa ctgttgttgc ccggattgtt cttggcagcc
1951 gtcatgtacg catacgtcca ataccgaaag cctcaatgca cggtcacctg
2001 tagaggagaa tgcgcgcacg gttagaggtt atagtgctga ctatgttatc
2051 atgtgtgtga tagtgagtgt atctttaggt ttcgcaatcg cagcatattt
2101 ttattcatcg ggagggcatt acgatcctga cgcggcaatc tttagacaag
2151 atttaaatga agttcaaatt aatttcggaa agcatccaat cgacccgaaa
2201 gtgattgaag cagtccatca ttggcaacgt gctcctttcg gacgttctca
2251 gggtgaaagc gtggatgtga gtaaaaactt ttttgaagat tccgtagatg
2301 aagatgatga agaggaacga gccgaggtga ataaagatga agtaacgatg
2351 aaaaaatcta aatttgctgt atgtaatcgt ttgtgttcta ttaggaatag
2401 cttattaagg ttgttttgga taatcacctt aataataata gtggttaagt
2451 gtcgttccta agtttttctt tttaaagttt ttacactttt ctttctcttt
2501 cgacgactca aaaacttaaa atgattaatc gtactgatca tacgacgcgg
2551 attatgcgaa aataattagt aatgcgcgcc aattacttta aaatgtggtg
2601 caatgttatg tgaaatatac aagtttttct gtttatttaa cgttaagaag
2651 atatgaaatc tcccataact atgttatggt ttctcgcata tccttttaac
2701 gctaacttta tagaaacttt tgtatgtttt tgtttaagct ataaataatg
2751 tagcttgtat cggtttccga taataataaa gtttttctca aacttataaa
2801 tgagacgtgg cgaatacgat aattcgtagt gtttgtggat gacactttaa
2851 ttaagattca tattgcggtc cgcagtcatt actaagataa ttataaaaaa
2901 cttagtatct gacctatgcg gatgagacga gttagtctcg accattttca
2951 cacaatggtt ctgaggggtg caactccccc ccttaactag agggaaatct
3001 agccc