Sequence of DPV Maize streak virus
Maize streak virus isolate UKas-75, complete genome.
ACC No: EF547079
Dated: 2007-11-01 | Length: 2687 | CRC: -2094963565
ID EF547079; SV 1; circular; genomic DNA; STD; VRL; 2687 BP. XX AC EF547079; XX DT 23-MAY-2007 (Rel. 91, Created) DT 01-NOV-2007 (Rel. 93, Last updated, Version 2) XX DE Maize streak virus isolate UKas-75, complete genome. XX KW . XX OS Maize streak virus OC Viruses; ssDNA viruses; Geminiviridae; Mastrevirus. XX RN [1] RP 1-2687 RA Owor B.E., Martin D.P., Shepherd D.N., Edema R., Monjane A.L., RA Rybicki E.P., Thomson J.A., Varsani A.; RT "Genetic analysis of maize streak virus isolates from Uganda reveals RT widespread distribution of a recombinant variant"; RL J. Gen. Virol. 88(11):3154-3165(2007). XX RN [2] RP 1-2687 RA Varsani A., Owor B., Shepherd D., Edema R., Monjane A., Rybicki E., RA Thomson J., Martin D.; RT ; RL Submitted (11-APR-2007) to the EMBL/GenBank/DDBJ databases. RL Molecular and Cell Biology, University of Cape Town, Cape Town, WP 7701, RL South Africa XX FH Key Location/Qualifiers FH FT source 1. .2687 FT /organism="Maize streak virus" FT /isolate="UKas-75" FT /mol_type="genomic DNA" FT /db_xref="taxon:10821" FT gene join(2686. .2687,1. .304) FT /gene="MP" FT CDS join(2686. .2687,1. .304) FT /codon_start=1 FT /gene="MP" FT /product="movement protein" FT /db_xref="UniProtKB/TrEMBL:A5JLH7" FT /protein_id="ABQ40175.1" FT /translation="MDPQNALYYQPRVPTAAPASAGVPWSRVGEVAILSFVALICFYLL FT YLWVLRDLILVLKARQGRSTEELIFGGQAVDRSNPIPNLPATPSQGNPGPFVPGTG" FT gene 315. .1049 FT /gene="CP" FT CDS 315. .1049 FT /codon_start=1 FT /gene="CP" FT /product="coat protein" FT /db_xref="GOA:Q6LBI6" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:Q6LBI6" FT /protein_id="ABQ40173.1" FT /translation="MSTSKRKRGDDSNWSKRVTKKKPSSAGLKRAGSKADRPSLQIQTL FT QHAGTTMITVPSGGVCDLINTYARGSDEGNRHTSETLTYKIAIDYHFVADAAACRYSNT FT GTGVMWLVYDTTPGGQAPTPQTIFAYPDTLKAWPATWKVSRELCHRFVVKRRWLFNMET FT DGRIGSDIPPSNASWKPCKRNIYFHKFTSGLGVRTQWKNVTDGGVGAIQRGALYMVIAP FT GNGLTFTAHGQTRLYFKSVGNQ" FT misc_feature complement(1050. .1201) FT /note="short intergenic region; SIR" FT gene complement(1202. .1663) FT /gene="RepB" FT CDS complement(1202. .1663) FT /codon_start=1 FT /gene="RepB" FT /product="RepB" FT /db_xref="GOA:A5JLH9" FT /db_xref="UniProtKB/TrEMBL:A5JLH9" FT /protein_id="ABQ40176.1" FT /translation="MDGFCIQSSDERSRKQSLYIVGPTRTGKSTWARSLGVHNYWQNNV FT DWSSYNEDAIYNIVDDIPFKFCPCWKQLVGCQRDFIVNPKYGKKKKVQKKSKPTIILAN FT SDEDWMKEMTPGQLEYFEANCVIYIMSPGEKWYSPPGLPPTEAVHSDRS" FT gene complement(1558. .2376) FT /gene="RepA" FT CDS complement(1558. .2376) FT /codon_start=1 FT /gene="RepA" FT /product="RepA" FT /db_xref="GOA:A5JLI0" FT /db_xref="UniProtKB/TrEMBL:A5JLI0" FT /protein_id="ABQ40174.1" FT /translation="MASSSSNRQFSHRNANTFLTYPKCPENPEIACQMIRELVVRWIPK FT YILCAREAHKDGSLHLHALLQTEKPVRISDSRFFDINGFHPNIQSAKSVNRVRDYILKE FT PLAMFERGTFIPRKSPFLGKSDSEVKEKKPSKDEIMRDIISHSTSKEEYLSMIQKEFPY FT DWATKLQYFEYSANKLFPEIQEEFTNPHPQSSPDLLCNESINDWLQPNIFQVSPEAYML FT LQPTCYTLEDAISDLQWMDSVSSHQMKDQESRASTSSAQQEQENLLGPEA" FT misc_feature 2377. .2685 FT /note="long intergenic region; LIR" XX SQ Sequence 2687 BP; 688 A; 642 C; 690 G; 667 T; 0 other; ef547079 Length: 2687 01-NOV-2007 Type: N Check: 4357 .. 1 ggatccacag aacgccctgt attatcagcc gcgggtaccc acagcagctc 51 cggcatccgc aggagtgccg tggagtcgcg taggcgaggt agctattttg 101 agctttgttg cactgatttg cttttacctg ctttaccttt gggtgctgag 151 agaccttatc ttagttctga aggctcgaca aggcagatcc acggaggagc 201 tgatatttgg aggacaagct gtggatagga gcaaccctat ccctaatcta 251 ccagcaacac caagtcaggg caatcccggg ccatttgttc caggcacggg 301 ataagcattc agccatgtcc acgtccaaga ggaagcgggg agatgattcg 351 aattggagta agcgggtgac taagaagaag ccctcttcag ctgggctgaa 401 gcgggctgga agcaaggccg ataggccatc cctgcaaatc cagacactcc 451 agcatgctgg gaccaccatg ataactgtcc catccggagg agtatgtgac 501 ctcatcaaca cctatgcccg aggatcggac gagggcaacc gccacaccag 551 cgagactctc acgtacaaga tcgccatcga ctaccacttc gttgccgacg 601 cggcagcctg ccgctactcc aacaccggaa ccggtgtaat gtggctggtg 651 tatgacacca ctcccggcgg acaagctccg accccgcaaa ctatatttgc 701 ctaccctgac acgctaaaag cgtggccggc cacatggaag gtgagccggg 751 agctgtgtca tcgcttcgtg gtgaaacggc gatggttgtt caacatggag 801 accgacgggc ggattggttc ggacattcct ccctcgaatg caagttggaa 851 gccttgcaag cgcaacatct acttccacaa gttcacgagc gggttgggag 901 tgagaacgca gtggaagaat gtaacggacg gaggagttgg tgccatccag 951 agaggagcgt tgtacatggt cattgccccc ggcaatggtc ttacatttac 1001 tgcccatggg cagacccgtc tgtactttaa gagtgttggc aaccagtaat 1051 gaataaaaac tcccgtttta ttatatctga tgaatgctga aagcttacat 1101 taatatgtcg tgcgatggca cgaaaaaaca cacgcaatca atacaggggg 1151 gtagtaggcg ggcggctaag ggtggtgctc ggcgggcaaa acatcgaaaa 1201 atcaagatct atctgaatgt actgcctccg taggaggcag cccaggggga 1251 gaataccact tctcccccgg cgacataatg tatatgacgc agtttgcctc 1301 gaaatactcc agctgccctg gagtcatttc cttcatccaa tcttcatccg 1351 agttggcgag gattattgta ggcttagact tcttctgcac cttcttcttc 1401 ttaccatact tggggttgac aatgaaatcc ctctgacagc caactaactg 1451 tttccaacaa ggacagaatt taaacgggat atcatctacg atgttgtaga 1501 ttgcgtcttc gttatatgaa gaccaatcaa cattattttg ccagtaatta 1551 tgaaccccta ggcttctggc ccaagtagat tttcctgttc ttgttgggcc 1601 gacgatgtag aggctctgct ttcttgatct ttcatctgat gactggatac 1651 agaatccatc cattggaggt cagaaattgc atcctcgagg gtataacagg 1701 taggttgaag gagcatgtaa gcttcgggac tgacctggaa gatgttaggc 1751 tggagccaat cattgattga ctcattacaa agtaaatcag gtgaggattg 1801 cggatgagga ttggtgaact cttcctgaat ctcaggaaaa agcttatttg 1851 cagagtattc gaaatactgc aattttgtgg cccaatcata gggaaactct 1901 ttctggatca tggagaggta ctcttccttg gaagtagagt gtgaaataat 1951 gtctcgcatt atttcatctt tggaaggttt tttttcctta acttctgaat 2001 cagattttcc taggaagggg gacttcctag gaatgaaagt acctctctca 2051 aacatagcca gaggttcctt gagaatgtaa tccctcaccc tgtttactga 2101 cttggcactc tgaatgtttg ggtgaaaccc attaatatca aagaaccttg 2151 agtcggatat ccttaccggc ttctctgtct gaagcaatgc atgtaaatgc 2201 aaacttccat ctttatgtgc ctcgcgggca catagaatat atttcggaat 2251 ccaacgaaca acgagctccc gtatcatctg acaggcgatt tcaggatttt 2301 ctggacactt tggataggtt aggaacgtat tagcgttcct gtgtgagaac 2351 tgacggttgg atgaggagga ggccatatcc gacgacggag gatgaggctg 2401 aaggatggca gaatgggagc tctcaactct ataccaaccg gtgcgccttc 2451 gaaatccgcc gccccctctc ttatagtggt tgtgaatggg ccggaccggg 2501 ccggcccagc aggaaaagaa ggcgcgcact aatattaccg cgccttcttt 2551 tcctgcgagg gcccggtagg gcccgagcga tttgatgtaa agcttggtcc 2601 tgctttgtat gatttatcta aagcagccca atctaaagaa accggtcccg 2651 ggcactataa attgcctaac aagtgcgatt cattcat