Sequence of DPV Maize streak virus
Maize streak virus isolate UKab-82, complete genome.
ACC No: EF547081
Dated: 2007-11-01 | Length: 2689 | CRC: 1612194724
ID EF547081; SV 1; circular; genomic DNA; STD; VRL; 2689 BP. XX AC EF547081; XX DT 23-MAY-2007 (Rel. 91, Created) DT 01-NOV-2007 (Rel. 93, Last updated, Version 2) XX DE Maize streak virus isolate UKab-82, complete genome. XX KW . XX OS Maize streak virus OC Viruses; ssDNA viruses; Geminiviridae; Mastrevirus. XX RN [1] RP 1-2689 RA Owor B.E., Martin D.P., Shepherd D.N., Edema R., Monjane A.L., RA Rybicki E.P., Thomson J.A., Varsani A.; RT "Genetic analysis of maize streak virus isolates from Uganda reveals RT widespread distribution of a recombinant variant"; RL J. Gen. Virol. 88(11):3154-3165(2007). XX RN [2] RP 1-2689 RA Varsani A., Owor B., Shepherd D., Edema R., Monjane A., Rybicki E., RA Thomson J., Martin D.; RT ; RL Submitted (11-APR-2007) to the EMBL/GenBank/DDBJ databases. RL Molecular and Cell Biology, University of Cape Town, Cape Town, WP 7701, RL South Africa XX FH Key Location/Qualifiers FH FT source 1. .2689 FT /organism="Maize streak virus" FT /isolate="UKab-82" FT /mol_type="genomic DNA" FT /db_xref="taxon:10821" FT gene join(2688. .2689,1. .304) FT /gene="MP" FT CDS join(2688. .2689,1. .304) FT /codon_start=1 FT /gene="MP" FT /product="movement protein" FT /db_xref="UniProtKB/TrEMBL:A5JLB8" FT /protein_id="ABQ40183.1" FT /translation="MDPQNALYYQPRVPTAAPASAGVPWSRVGEVAILSFVALICFYLL FT YLWVLRDLILVLKARQGRSTEELIFGGQAVDRSNPIPNLPAPPSQGNPGPFVPGTG" FT gene 315. .1049 FT /gene="CP" FT CDS 315. .1049 FT /codon_start=1 FT /gene="CP" FT /product="coat protein" FT /db_xref="GOA:A5JLI6" FT /db_xref="UniProtKB/TrEMBL:A5JLI6" FT /protein_id="ABQ40181.1" FT /translation="MSTSKRKRGDDSNWSKRVTKKKPSSAGLKRAASKADRPSLQIQTL FT QHAGTTMITVPSGGVCDLINTYARGSDEGNRHTSETLTYKIAIDYHFVADAAACRYSNT FT GTGVMWLVYDTTPGGQAPTPQTIFAYPDTLKAWPATWKVSRELCHRFVVKRRWLFNMET FT DGRIGSDIPPSNASWKPCKRNIYFHKFTSGLGVRTQWKNVTDGGVGAIQRGALYMVIAP FT GNGLTFTAHGQTRLYFKSVGNQ" FT misc_feature complement(1050. .1201) FT /note="short intergenic region; SIR" FT gene complement(1202. .1663) FT /gene="RepB" FT CDS complement(1202. .1663) FT /codon_start=1 FT /gene="RepB" FT /product="RepB" FT /db_xref="GOA:A5JLC7" FT /db_xref="UniProtKB/TrEMBL:A5JLC7" FT /protein_id="ABQ40184.1" FT /translation="MDGFCIQSSDERSRKQSLYIVGPTRTGKSTWARSLGVHNYWQNNV FT DWSSYNEDAIYNIVDDIPFKFCPCWKQLVGCQRDFIVNPKYGKKKKVQKKSKPTIILAN FT SDEDWMKEMTPGQLEYFEANCVIYIMSPGEKWYSPPELPPTEAVHSDRS" FT gene complement(1558. .2376) FT /gene="RepA" FT CDS complement(1558. .2376) FT /codon_start=1 FT /gene="RepA" FT /product="RepA" FT /db_xref="GOA:A5JLI8" FT /db_xref="InterPro:IPR001146" FT /db_xref="InterPro:IPR001191" FT /db_xref="UniProtKB/TrEMBL:A5JLI8" FT /protein_id="ABQ40182.1" FT /translation="MASSSSNRQFSHRNANTFLTYPKCPENPEIACQMIWELVVRWIPK FT YILCAREAHKDGSLHLHALLQTEKPVRISDSRFFDINGFHPNIQSAKSVNRVRDYILKE FT PLAVFERGTFIPRKSPFLGKSDSEVKEKKPSKDEIMRDIISHATSKEEYLSMIQKELPF FT DWSTKLQYFEYSANKLFPEIQEEFTNPHPPSSPDLLCNESINDWLQPNIFQVSPEAYML FT LQPTCYTLEDAISDLQWMDSVSSHQMKDQESRASTSSGQQEPENLLGPEA" FT misc_feature 2377. .2687 FT /note="long intergenic region; LIR" XX SQ Sequence 2689 BP; 688 A; 645 C; 692 G; 664 T; 0 other; ef547081 Length: 2689 01-NOV-2007 Type: N Check: 5315 .. 1 ggatccacag aacgccctgt attatcagcc gcgggtaccc acagcagctc 51 cggcatccgc aggagtgccg tggagtcgcg taggcgaggt agctattttg 101 agctttgttg cactgatttg cttttacctg ctttaccttt gggtgctgag 151 agaccttatc ttagttctga aggctcgaca aggcagatcc acggaggagc 201 tgatatttgg aggacaagct gtggatagga gcaaccctat ccctaatcta 251 ccagcaccac caagtcaggg caatcccggg ccatttgttc caggcacggg 301 ataagcattc agccatgtcc acgtccaaga ggaagcgggg agatgattcg 351 aattggagta agcgggtgac taagaagaag ccctcgtcag ctgggctgaa 401 gagggctgca agcaaggccg ataggccatc cctccaaatc cagacactcc 451 agcatgctgg gaccaccatg ataactgtcc catccggagg agtatgtgac 501 ctcatcaaca cctatgcccg aggatctgac gagggcaacc gccacaccag 551 cgagactctc acgtacaaga tcgccatcga ctaccacttc gttgccgacg 601 cggcagcctg ccgctactcc aacaccggaa ccggtgtaat gtggctggtg 651 tatgacacca ctcccggcgg acaagctccg accccgcaaa ctatatttgc 701 ctaccctgac acgctaaaag cgtggccggc cacatggaag gtgagccggg 751 agctgtgtca tcgcttcgtg gtgaaacggc gatggttgtt caacatggag 801 accgacgggc ggattggttc ggacattcct ccctcgaatg caagttggaa 851 gccttgcaag cgcaacatct acttccacaa gttcacgagc gggttgggag 901 tgagaacgca gtggaagaat gtaacggacg gaggagttgg tgccatccag 951 agaggagcgt tgtacatggt cattgccccc ggcaatggtc ttacatttac 1001 tgcccatggg cagacccgtc tgtactttaa gagtgttggc aaccagtaat 1051 gaataaaaac tcccgtttta ttatatctga tgaatgctgc aagcttacat 1101 taatatgtcg tgcgatggca cgaaaaaaca cacgcaatca atacaggggg 1151 gtagtaggct ggcggctaag ggtggtgctc ggcgggcaga acatcgaaaa 1201 atcaagatct atctgaatgt actgcctccg taggaggcag ctcaggggga 1251 gaataccact tctcccccgg cgacataatg taaatgacgc agtttgcctc 1301 gaaatactcc agctgccctg gagtcatttc cttcatccaa tcttcatccg 1351 agttggcgag gattattgta ggcttagact tcttctgcac cttcttcttc 1401 ttaccatact tggggtttac aatgaaatcc ctctgacagc caactaactg 1451 tttccaacaa ggacagaatt taaacggaat atcatctacg atgttgtaga 1501 ttgcgtcttc gttgtatgaa gaccaatcaa cattattttg ccagtaatta 1551 tgaaccccta ggcttctggc ccaagtagat tttccggttc ttgttggccc 1601 gacgatgtag aggctctgct ttcttgatct ttcatctgat gactggatac 1651 agaatccatc cattggaggt cagaaattgc gtcctcgagg gtataacagg 1701 taggttgaag gagcatgtaa gcttcgggac taacctggaa gatgttaggc 1751 tggagccaat cattgattga ctcattacaa agcaaatcag gtgaggaggg 1801 tggatgagga ttggtgaact cttcctgaat ctcaggaaaa agcttatttg 1851 cagagtattc aaaatactgc aattttgtgg accaatcaaa gggaagctct 1901 ttctggatca tggagaggta ctcttccttg gaagtagcgt gtgaaataat 1951 gtctcgcatt atttcatctt tggaaggttt tttttcctta acttctgaat 2001 cagattttcc taggaagggg gacttcctag gaatgaaagt acctctctca 2051 aacacagcca gaggttcctt gagaatgtaa tccctcaccc tgtttactga 2101 cttggcactc tgaatgtttg ggtggaaccc attaatatca aagaaccttg 2151 agtcggatat ccttaccggc ttctctgtct gaagcaatgc atgtaaatgc 2201 aaacttccat ctttatgtgc ctctcgggca catagaatat atttgggaat 2251 ccaacgaaca acgagctccc agatcatctg acaggcgatt tcaggatttt 2301 ctggacactt tggataggtg aggaacgtgt tagcgttcct gtgtgagaac 2351 tgacggttgg atgaggagga ggccatagcc gacgacggag gatgaggctg 2401 aaggatggca gactgggagc tccaaactct atactatacc cgtgcgcctt 2451 cgaaatccgc cgctcccttg tcttatagtg gttgtaaatg ggccggaccg 2501 ggccggccca gcaggaaaag aaggcgcgca ctaatattac cgcgccttct 2551 tttcctgcga gggcccggta gggcccgagc gatttgatgt aaagcctggt 2601 cctgctttgt atgatttatc taaagcagcc caatctaaag aaaccggtcc 2651 cgggcactat aaattgccta acaagtgcga ttcattcat