Sequence of DPV Maize streak virus

Maize streak virus isolate UNak-111, complete genome.

ACC No: EF547086

Dated: 2007-11-01 | Length: 2687 | CRC: -234174729

                
ID   EF547086; SV 1; circular; genomic DNA; STD; VRL; 2687 BP.
XX
AC   EF547086;
XX
DT   23-MAY-2007 (Rel. 91, Created)
DT   01-NOV-2007 (Rel. 93, Last updated, Version 2)
XX
DE   Maize streak virus isolate UNak-111, complete genome.
XX
KW   .
XX
OS   Maize streak virus
OC   Viruses; ssDNA viruses; Geminiviridae; Mastrevirus.
XX
RN   [1]
RP   1-2687
RA   Owor B.E., Martin D.P., Shepherd D.N., Edema R., Monjane A.L.,
RA   Rybicki E.P., Thomson J.A., Varsani A.;
RT   "Genetic analysis of maize streak virus isolates from Uganda reveals
RT   widespread distribution of a recombinant variant";
RL   J. Gen. Virol. 88(11):3154-3165(2007).
XX
RN   [2]
RP   1-2687
RA   Varsani A., Owor B., Shepherd D., Edema R., Monjane A., Rybicki E.,
RA   Thomson J., Martin D.;
RT   ;
RL   Submitted (11-APR-2007) to the EMBL/GenBank/DDBJ databases.
RL   Molecular and Cell Biology, University of Cape Town, Cape Town, WP 7701,
RL   South Africa
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .2687
FT                   /organism="Maize streak virus"
FT                   /isolate="UNak-111"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:10821"
FT   gene            join(2686. .2687,1. .304)
FT                   /gene="MP"
FT   CDS             join(2686. .2687,1. .304)
FT                   /codon_start=1
FT                   /gene="MP"
FT                   /product="movement protein"
FT                   /db_xref="UniProtKB/TrEMBL:A5JLB8"
FT                   /protein_id="ABQ40202.1"
FT                   /translation="MDPQNALYYQPRVPTAAPASAGVPWSRVGEVAILSFVALICFYLL
FT                   YLWVLRDLILVLKARQGRSTEELIFGGQAVDRSNPIPNLPAPPSQGNPGPFVPGTG"
FT   gene            315. .1049
FT                   /gene="CP"
FT   CDS             315. .1049
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /db_xref="GOA:Q6LBI6"
FT                   /db_xref="InterPro:IPR000143"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="UniProtKB/TrEMBL:Q6LBI6"
FT                   /protein_id="ABQ40200.1"
FT                   /translation="MSTSKRKRGDDSNWSKRVTKKKPSSAGLKRAGSKADRPSLQIQTL
FT                   QHAGTTMITVPSGGVCDLINTYARGSDEGNRHTSETLTYKIAIDYHFVADAAACRYSNT
FT                   GTGVMWLVYDTTPGGQAPTPQTIFAYPDTLKAWPATWKVSRELCHRFVVKRRWLFNMET
FT                   DGRIGSDIPPSNASWKPCKRNIYFHKFTSGLGVRTQWKNVTDGGVGAIQRGALYMVIAP
FT                   GNGLTFTAHGQTRLYFKSVGNQ"
FT   misc_feature    complement(1050. .1201)
FT                   /note="short intergenic region; SIR"
FT   gene            complement(1202. .1663)
FT                   /gene="RepB"
FT   CDS             complement(1202. .1663)
FT                   /codon_start=1
FT                   /gene="RepB"
FT                   /product="RepB"
FT                   /db_xref="GOA:A5JLK6"
FT                   /db_xref="UniProtKB/TrEMBL:A5JLK6"
FT                   /protein_id="ABQ40203.1"
FT                   /translation="MDGFCIQSSDERSRKQSLYIVGPTRTGKSTWARSLGVHNYWQNNV
FT                   DWSSYNEDAIYNIVDDIPFKFCPCWKQLVGCQRDFIVNPKYGKKKKVQKKSKPTIILAN
FT                   SDEDWLKEMTPGQLEYFEANCVIYIMSPGEKWYSPPELPPTEAVHSDRS"
FT   gene            complement(1558. .2376)
FT                   /gene="RepA"
FT   CDS             complement(1558. .2376)
FT                   /codon_start=1
FT                   /gene="RepA"
FT                   /product="RepA"
FT                   /db_xref="GOA:A5JLK7"
FT                   /db_xref="UniProtKB/TrEMBL:A5JLK7"
FT                   /protein_id="ABQ40201.1"
FT                   /translation="MASSSSNRQFSHRNANTFLTYPKCPENPEIACQMIWELVVRWIPK
FT                   YILCAREAHKDGSLHLHALLQTEKPVRISDSRFFDINGFHPNIQSAKSVNRVRDYILKE
FT                   PLAMFERGTFIPRKSPFLGKSDSEVKEKKPSKDEIMRDIISHSTSKEEYLSMIQKEFPY
FT                   DWATKLQYFEYSANKLFPEIQEEFTNPHPQSSPDLLCNESINDWLQPNIFQVSPEAYML
FT                   LQPTCYTLEDAISDLQWMDSVSSHQMKDQESRASTSSVQHEQENLLGPEA"
FT   misc_feature    2377. .2685
FT                   /note="long intergenic region; LIR"
XX
SQ   Sequence 2687 BP; 689 A; 641 C; 688 G; 669 T; 0 other;

ef547086 Length: 2687  01-NOV-2007  Type: N  Check: 4721  ..

       1  ggatccacag aacgccctgt attatcagcc gcgggtaccc acagcagctc
      51  cggcatccgc aggagtgccg tggagtcgcg taggcgaggt agctattttg
     101  agctttgttg cactgatttg cttttacctg ctttaccttt gggtgctgag
     151  agaccttatc ttagttctga aggctcgaca aggcagatcc acggaggagc
     201  tgatatttgg aggacaagct gtggatagga gcaaccctat ccctaatcta
     251  ccagcaccac caagtcaggg caatcccggg ccatttgttc caggcacggg
     301  ataagcattc agccatgtcc acgtccaaga ggaagcgggg agatgattcg
     351  aattggagta agcgggtgac taagaagaag ccctcttcag ctgggctgaa
     401  gcgggctgga agcaaggccg ataggccatc cctgcaaatc cagacactcc
     451  agcatgctgg gaccaccatg ataactgtcc catccggagg agtatgtgac
     501  ctcatcaaca cctatgcccg aggatcggac gagggcaacc gccacaccag
     551  cgagactctc acgtacaaga tcgccatcga ctaccacttc gttgccgacg
     601  cggcagcctg ccgctactcc aacaccggaa ccggtgtaat gtggctggtg
     651  tatgacacca ctcccggcgg acaagctccg accccgcaaa ctatatttgc
     701  ctaccctgac acgctaaaag cgtggccggc cacatggaag gtgagccggg
     751  agctgtgtca tcgcttcgtg gtgaaacggc gatggttgtt caacatggag
     801  accgacgggc ggattggttc ggacattcct ccctcgaatg caagttggaa
     851  gccttgcaag cgcaacatct acttccacaa gttcacgagc gggttgggag
     901  tgagaacgca gtggaagaat gtaacggacg gaggagttgg tgccatccag
     951  agaggagcgt tgtacatggt cattgccccc ggcaatggtc ttacatttac
    1001  tgcccatggg cagacccgtc tgtactttaa gagtgttggc aaccagtaat
    1051  gaataaaaac tcccgtttta ttatatctga tgaatgctga aagcttacat
    1101  taatatgtcg tgcgatggca cgaaaaaaca cacgcaatca atacaggggg
    1151  gtagtaggcg ggcggctaag ggtggtgctc ggcgggcaaa acatcgaaaa
    1201  atcaagatct atctgaatgt actgcctccg taggaggcag ctcaggggga
    1251  gaataccact tctcccccgg cgacataatg taaatgacgc agtttgcctc
    1301  gaaatactcc agctgccctg gagtcatttc cttcaaccaa tcttcatccg
    1351  agttggcgag gattattgta ggcttagact tcttctgcac cttcttcttc
    1401  ttaccatact tggggtttac aatgaaatcc ctctgacagc caactaactg
    1451  tttccaacaa ggacagaatt taaacgggat atcatctacg atgttgtaga
    1501  ttgcgtcttc gttatatgaa gaccaatcaa cattattttg ccagtaatta
    1551  tgaaccccta ggcttctggc ccaagtagat tttcctgttc gtgttggacc
    1601  gacgatgtag aggctctgct ttcttgatct ttcatctgat gactggatac
    1651  agaatccatc cattggaggt cagaaattgc atcctcgagg gtataacagg
    1701  taggttgaag gagcatgtaa gcttcgggac tgacctggaa gatgttaggc
    1751  tggagccaat cattgattga ctcattacaa agtaaatcag gtgaggattg
    1801  cggatgagga ttggtgaact cttcctgaat ctcaggaaaa agcttatttg
    1851  cagagtattc gaaatactgc aattttgtgg cccaatcata gggaaactct
    1901  ttctggatca tggagaggta ctcttccttg gaagtagagt gtgaaataat
    1951  gtctcgcatt atttcatctt tggaaggttt tttttcctta acttctgaat
    2001  cagattttcc taggaagggg gacttcctag gaatgaaagt acctctctca
    2051  aacatagcca gaggttcctt gagaatgtaa tccctcaccc tgtttactga
    2101  cttggcactc tgaatgtttg ggtgaaaccc attaatatca aagaaccttg
    2151  agtcggatat ccttaccggc ttctctgtct gaagcaatgc atgtaaatgc
    2201  aaacttccat ctttatgtgc ctctcgggca catagaatat atttgggaat
    2251  ccaacgaaca acgagctccc atatcatctg acaggcgatt tcaggatttt
    2301  ctggacactt tggataggtt aggaacgtat tagcgttcct gtgtgagaac
    2351  tgacggttgg atgaggagga ggccatatcc gacgacggag gatgaggctg
    2401  tgggatggca gaatgggagc tctcaactct ataccaaccg gtgcgccttc
    2451  gaaatccgcc gccccctctc ttatagtggt tgtgaatggg ccggacctgg
    2501  ccggcccagc aggaaaagaa ggcgcgcact aatattaccg cgccttcttt
    2551  tcctgcgagg gcccggtagg gcccgagcga tttgatgtaa agcttggtcc
    2601  tgctttgtat gatttatcta aagcagccca atctaaagaa accggtcccg
    2651  ggcactataa attgcctaac aagtgcgatt cattcat