Sequence of DPV Tomato yellow leaf curl Thailand virus
Tomato yellow leaf curl Thailand virus isolate LY3 segment DNA-A, complete sequence.
ACC No: EF577266
Dated: 2010-09-07 | Length: 2744 | CRC: 1926003628
ID EF577266; SV 1; circular; genomic DNA; STD; VRL; 2744 BP. XX AC EF577266; XX DT 29-MAY-2007 (Rel. 91, Created) DT 07-SEP-2010 (Rel. 106, Last updated, Version 2) XX DE Tomato yellow leaf curl Thailand virus isolate LY3 segment DNA-A, complete DE sequence. XX KW . XX OS Tomato yellow leaf curl Thailand virus OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2744 RX AGRICOLA; IND44034834. RX DOI; 10.1094/PDIS-91-10-1363A. RA Jan F.J., Green S.K., Shih S.L., Lee L.M., Ito H., Kimbara J., Hosoi K., RA Tsai W.S.; RT "First Report of Tomato yellow leaf curl Thailand virus in Taiwan"; RL Plant Dis. 91(10):1363-1363(2007). XX RN [2] RP 1-2744 RA Tsai W.S., Green S.K., Shih S.L., Lee L.M., Ito H., Kimbara J., Hosoi K., RA Jan F.-J.; RT ; RL Submitted (24-APR-2007) to the EMBL/GenBank/DDBJ databases. RL Virology, AVRDC-The World Vegetable Center, PO Box 42, Shanhua, Tainan, RL Taiwan 74199, ROC XX FH Key Location/Qualifiers FH FT source 1. .2744 FT /organism="Tomato yellow leaf curl Thailand virus" FT /segment="DNA-A" FT /host="tomato" FT /isolate="LY3" FT /mol_type="genomic DNA" FT /country="Taiwan" FT /collection_date="2007" FT /db_xref="taxon:85752" FT gene 87. .473 FT /gene="AV2" FT CDS 87. .473 FT /codon_start=1 FT /gene="AV2" FT /product="precoat protein" FT /db_xref="GOA:A5JH98" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:A5JH98" FT /protein_id="ABQ52676.1" FT /translation="MVPYLRLSHQVSAKFKMWDPLLNEFPENVHGFRCMLAVKYLQAVE FT KTYSPDTLGFDLIRDLIGVIRAKNYVEASSRYSHFHARLESTSPSELRQPIQQPCCCPH FT CPRHKRADMEEPTCIQKAQVLQNV" FT gene 295. .1065 FT /gene="AV1" FT CDS 295. .1065 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:Q6R4D4" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:Q6R4D4" FT /protein_id="ABQ52677.1" FT /translation="MSKRPADILISTPVSKVRRRLNFDSPYNSRAAVPTVRVTKGQIWK FT NRPAYRKPRFYRMYRSPDVPKGCEGPCKVQSFDAKNDIGHMGKVICLSDVTRGIGLTHR FT VGKRFCVKSLYFVGKIWMDENIKVKNHTNTVLFWIVRDRRPTGTPNDFQQVFNVYDNEP FT STATVKNDQRDRFQVIRRFQATVTGGQYAAKEQAIIRKFYRVNNYVVYNHQEAGKYENH FT TENALLLYMACTHASNPVYATLKVRSYFYDSVTN" FT gene complement(1062. .1466) FT /gene="AC3" FT CDS complement(1062. .1466) FT /codon_start=1 FT /gene="AC3" FT /product="AC3 protein" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:A5JUS0" FT /protein_id="ABQ52678.1" FT /translation="MDLRTGELLTATQLESGVYIWTVKNPLYFKITKHLESPFQRNHDI FT ITLQIQFNHNLRKALGIHKCFLVCKIWTHLHPQTSRFLTVFKYQCIKYLDRLGVISINN FT VIRAMSHVLYNVLEGTIDVIEEHDIKFNIY" FT gene complement(1207. .1611) FT /gene="AC2" FT CDS complement(1207. .1611) FT /codon_start=1 FT /gene="AC2" FT /product="AC2 protein" FT /db_xref="GOA:A5JUS9" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:A5JUS9" FT /protein_id="ABQ52679.1" FT /translation="MRSSSPSKAHSTQVPIKVQHRIAKKATRRRRVDLPCGCSYFVAIG FT CHNNGFTHRGTTHCNSIREWRVYLDGQKSPIFQDNQAPREPIPEEPRHNHVTNPVQPQP FT EESVGDTQMFSSLQNLDSFTSSDLAFLNSI" FT gene complement(1514. .2599) FT /gene="AC1" FT CDS complement(1514. .2599) FT /codon_start=1 FT /gene="AC1" FT /product="replication-associated protein" FT /db_xref="GOA:A5JUT0" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:A5JUT0" FT /protein_id="ABQ52680.1" FT /translation="MAPPNKFRINAKNYFLTYPHCSLTKEEALSQIQALETPTNKLFIR FT ICRELHEDGTPHLHVLIQFEGKFQCKNQRFFDLTSPTRSAHFHPNIQGAKSSTDVKTYM FT EKDGDVLDHGIFQIDGRSARGGCQSANDAYAEAINPGSKASALTILREKAPKDFVLQFH FT NLNSNLDRIFTPPMEEYISPFSSSSFNQVPEELKEWACNNVVSAAARPLRPIGIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYNNNVWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEYLEEEKNSALRNWAIRNAIFVTLKSPL FT YSGSNQGATPNSQEGNQTTES" FT gene complement(2149. .2448) FT /gene="AC4" FT CDS complement(2149. .2448) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:A5JH97" FT /protein_id="ABQ52681.1" FT /translation="MKMGLLTCMSSSNSKENSNVKIKDSSISHPQPGQHISIRTFRELK FT AQQMLKHTWKKTETCLIMEFSRSMEDRLEEVANLPTTHMPRQSIQGPKLRPSLY" XX SQ Sequence 2744 BP; 732 A; 539 C; 606 G; 867 T; 0 other; ef577266 Length: 2744 07-SEP-2010 Type: N Check: 5481 .. 1 accggatggc cgcgattttt tttgaagtgg tccccttgat gtgatgtttc 51 atccaattaa aacgctcggc taaagcttaa ttatttatgg tcccctattt 101 aagacttagt caccaagttt cggcgaaatt caaaatgtgg gatccactcc 151 taaacgaatt tccggaaaac gtccacggtt tccgttgtat gttagcggtt 201 aagtatctgc aagcggtcga gaagacgtat tcacctgata ccctagggtt 251 tgatctcatc cgtgatctca tcggtgtaat tcgtgcgaag aactatgtcg 301 aagcgtccag cagatattct catttccacg cccgtctcga aagtacgtcg 351 ccgtctgaac ttcgacagcc catacaacag ccgtgctgct gtccccactg 401 tccgcgtcac aaaagggcag atatggaaga accgacctgc atacagaaag 451 cccaggttct acagaatgta tagaagtcct gatgtcccta agggatgtga 501 gggtccatgt aaagtgcaat ctttcgatgc gaagaacgac attggtcata 551 tgggcaaggt aatctgtctg tctgacgtta cccgtggtat tgggcttact 601 catcgagttg gcaagcgttt ctgtgtcaag tcactttatt ttgtcgggaa 651 gatctggatg gatgaaaata ttaaggttaa gaatcacact aataccgttt 701 tattttggat agttagggat cggcgtccta ctggaacgcc taatgatttt 751 cagcaggtct ttaatgtata tgataatgaa cccagcactg ctactgtaaa 801 gaacgaccag cgtgatcgtt tccaggttat aaggaggttt caggcaacgg 851 tgactggtgg acaatatgca gctaaggagc aggcgattat tagaaagttt 901 tatcgtgtta ataattatgt agtttacaat caccaggaag ctgggaagta 951 cgagaaccat actgaaaatg ctttgttgtt gtatatggca tgtactcatg 1001 cctctaatcc tgtgtatgct actttgaaag tcagaagtta tttctatgac 1051 tcagtgacga attaataaat attaaatttt atatcgtgtt cttcaattac 1101 atcaattgtt ccttctaata cattgtacag tacatgagac attgccctaa 1151 ttacattatt tatactaatc acgcctaatc tatctaaata tttaatacat 1201 tgatatttaa atactgttaa gaaacgcgag gtctgaggat gtaaatgagt 1251 ccagattttg cagactagaa aacatttgtg tatccccaac gctttcctca 1301 ggttgtggtt gaactggatt tgtaacgtga ttatgtcgtg gttcctctgg 1351 aatgggctct ctaggtgctt ggttatcttg aaatataggg gatttttgac 1401 cgtccagata tacacgccac tctctaattg agttgcagtg agtagttccc 1451 cggtgcgtaa atccattatt gtgacatcct attgcgacga agtacgaaca 1501 tccacaaggt agatcaactc tccgtcgtct ggttgccttc ttggctattc 1551 ggtgttgcac cttgattgga acctgagtag agtgggcttt tgagggtgac 1601 gaagatcgca tttcttatag cccagtttct aagtgcggag ttcttttctt 1651 cttccaagta ctctttataa ctggagttgg gtccaggatt gcagagaaag 1701 atagtgggaa ttccgccttt aatttgaact ggctttccgt actttgtgtt 1751 tgattgccag tccctttggg cccccatgaa ttctttaaag tgttttagat 1801 agtgcggatc gacgtcatcg atgacgttgt accacacatt attattgtac 1851 acttttggac ttaaatctaa atggccacac agataattat gtggtcccaa 1901 tgacctagcc cacatcgtct tccccgttct gctatcaccc tcaattacta 1951 taccaatggg tctcaatggc cgcgcagcgg cactgacaac attattacaa 2001 gcccattctt taagttcttc tggaacttga ttaaaagaag aagaagaaaa 2051 aggagaaata tattcctcca ttggaggagt aaaaatccta tctaaattag 2101 aatttaaatt atgaaattgc aaaacaaaat ctttaggggc tttttccctc 2151 agtatagtga gggccgaagc tttggaccct ggattgattg cctcggcata 2201 tgcgtcgttg gcagattggc aacctcctct agccgatctt ccatcgatct 2251 ggaaaattcc atgatcaagc acgtctccgt ctttttccat gtatgtttta 2301 acatctgttg agcttttagc tccctgaatg ttcggatgga aatgtgctga 2351 cctggttggg gatgtgagat cgaagaatct ttgattttta cattggaatt 2401 ttccttcgaa ttggatgagg acatgcaggt gaggagtccc atcttcatgg 2451 agttccctgc agattctgat gaataattta ttagttggtg tttctagtgc 2501 ttgaatttgg gaaagtgctt cctctttagt gagagaacaa tgtgggtatg 2551 tcaggaaata gttcttggca tttattctga atttattagg aggagccatt 2601 gactggtcaa tcggtgtctc tcaaacttgg ctatgcaatc ggtgtctggg 2651 gtcttattta tacctggaca ccaaatggca taattgtaat ttagtgaatg 2701 tgatttaaaa ttcaaaatcc aaaagcggcc atccgtataa tatt