Sequence of DPV Botrytis cinerea mitovirus 1
Botrytis cinerea mitovirus 1 S isolate CanBc-1c-78 RNA-dependent RNA polymerase (RdRp) gene, complete cds.
ACC No: EF583556
Dated: 2011-01-20 | Length: 2171 | CRC: -997584932
ID EF583556; SV 3; linear; genomic RNA; STD; VRL; 2171 BP. XX AC EF583556; XX DT 01-JAN-2008 (Rel. 94, Created) DT 20-JAN-2011 (Rel. 107, Last updated, Version 4) XX DE Botrytis cinerea mitovirus 1 S isolate CanBc-1c-78 RNA-dependent RNA DE polymerase (RdRp) gene, complete cds. XX KW . XX OS Botrytis cinerea mitovirus 1 S OC Viruses; ssRNA positive-strand viruses, no DNA stage; Narnaviridae; OC Mitovirus; unclassified Mitovirus. XX RN [1] RP 1-2171 RX DOI; 10.1094/PHYTO-97-12-1590. RX PUBMED; 18943720. RA Wu M.D., Zhang L., Li G.Q., Jiang D.H., Hou M.S., Huang H.C.; RT "Hypovirulence and Double-Stranded RNA in Botrytis cinerea"; RL Phytopathology 97(12):1590-1599(2007). XX RN [2] RP 1-2171 RX PUBMED; 20674953. RA Wu M., Zhang L., Li G., Jiang D., Ghabrial S.A.; RT "Genome characterization of a debilitation-associated mitovirus infecting RT the phytopathogenic fungus Botrytis cinerea"; RL Virology 406(1):117-126(2010). XX RN [3] RP 1-2171 RA Wu M., Li G., Zhang L., Jiang D., Hou M.; RT ; RL Submitted (27-APR-2007) to the EMBL/GenBank/DDBJ databases. RL Department of Plant Protection, Huazhong Agricultural University, Shi Zi RL Shan, Wuhan, Hubei 430070, China XX RN [4] RC Sequence update by submitter RP 1-2171 RA Wu M., Li G., Zhang L., Jiang D., Hou M.; RT ; RL Submitted (27-OCT-2008) to the EMBL/GenBank/DDBJ databases. RL Department of Plant Protection, Huazhong Agricultural University, Shi Zi RL Shan, Wuhan, Hubei 430070, China XX RN [5] RC Sequence update by submitter RP 1-2171 RA Wu M., Li G., Zhang L., Jiang D., Hou M.; RT ; RL Submitted (05-APR-2010) to the EMBL/GenBank/DDBJ databases. RL Department of Plant Protection, Huazhong Agricultural University, Shi Zi RL Shan, Wuhan, Hubei 430070, China XX CC On Apr 5, 2010 this sequence version replaced gi:209974226. XX FH Key Location/Qualifiers FH FT source 1. .2171 FT /organism="Botrytis cinerea mitovirus 1 S" FT /host="Botrytis cinerea" FT /isolate="CanBc-1c-78" FT /mol_type="genomic RNA" FT /country="China" FT /db_xref="taxon:463636" FT gene 477. .2060 FT /gene="RdRp" FT CDS 477. .2060 FT /codon_start=1 FT /transl_table=4 FT /gene="RdRp" FT /product="RNA-dependent RNA polymerase" FT /db_xref="GOA:A9XN83" FT /db_xref="InterPro:IPR008686" FT /db_xref="UniProtKB/TrEMBL:A9XN83" FT /protein_id="ABU84872.2" FT /translation="MKHLFRIKRKAVIKNSTTRLPDHLWLGYVKVLVWLYDIPSAHRTY FT FFELLNRIQSLRRNSGDTWTVGYLKESHRLSSHWLSGNPDVCSGSIRVSVRGLPLIIPG FT RLRNVIYSRNNINITRALLTLLSTFRVMSATPKLKLSTITDPFNGVNETLPSLEVSRAL FT KNILQGNKFHFKKEDIKDPYSVNRLMDITKADPNGGVSLRNVIIDAYALMKHPKVYASL FT FKDLFLDYALLGDDICIANKAVADNYLLIMRDLGVEINLSKSLISSTGVVEFAKRWRVG FT QTDVSPASPALITRLLSNMNYLPVLILDLVNRGVKTIQNSEKLLSLSDSLHKIKKSITF FT SLIPYYDSEFAKCLLPLKGKDKSFSQKELFALYVHTDRIFNKLGLLEFHKAKDGDQENS FT KLSQSYLYNILDNSKLPLPAITSQIDNILIAQMKTITNVPTRNWLNNRDINLLTFECWH FT SYLIDTLSELSSISKVVPDYTIIKDNEKPDNLEMRRNLLFMQELIKDLKKWNPGIFEII FT PESILKEEEV" XX SQ Sequence 2171 BP; 753 A; 347 C; 349 G; 722 T; 0 other; ef583556 Length: 2171 20-JAN-2011 Type: N Check: 6203 .. 1 ggcctaacag cgttagctgt taggtgcttt gtagtgatac aaagcatggt 51 ataacccacc ttcatccact tatattttaa tataagttag tgataatccc 101 agacttattg acaataagtc gatcaatgga aacattgatg tttttgatat 151 taatcaaaaa ccaatattgt ttacactgat agtccattct atctattttc 201 aaaccttaag tggtcagata atagaaccta tcagctatgg tgtatatcac 251 cccgtcagac aattgtctta ggaagtacta taactaccgt aactggataa 301 gatgtgaagt tcccttcctt tgtagcttta atgcaattga gactgtcggt 351 catgaagacc aaacaatata aatattatta atatgcgcac aaaatgggag 401 aagataccta agcagatgaa ttaatttctg ctaccaatcg gtattttata 451 gtcaacttta atttaattat aaacaaatga aacatttatt tagaataaaa 501 agaaaagctg ttataaaaaa tagtactaca cgtttacctg atcatttatg 551 attaggatat gtgaaggtac ttgtatgatt gtatgatata ccaagcgcac 601 atcgaaccta tttctttgaa cttctaaaca gaattcaaag tcttaggcgg 651 aacagtggtg atacttgaac tgtaggatat cttaaagaat cccacagatt 701 gagttctcac tgactatcag gtaatcctga tgtctgttcc gggtcaattc 751 gagtttctgt acgaggacta cctttgatta ttccaggtag attaagaaat 801 gttatatatt ctcgaaataa tattaatatt actcgagcat tgttaacact 851 cttatctact ttccgtgtaa tgtctgctac gcctaagcta aaacttagca 901 caataacaga cccatttaat ggagttaatg agactcttcc ttctttggaa 951 gtttctcgtg ctctaaaaaa tatattacaa ggaaataaat tccattttaa 1001 gaaagaggat ataaaagatc cttattctgt gaatagactt atggacataa 1051 caaaagcaga tcctaatggt ggtgtatcac ttcggaatgt tattattgat 1101 gcatatgcat taatgaaaca tcctaaagta tatgcttcac tatttaagga 1151 cttgtttcta gattacgcac ttttaggaga tgatatctgt atagctaata 1201 aagctgtagc agataattat cttttaatta tgcgtgatct aggggttgag 1251 attaacctat ctaaatcttt gatttcatca actggtgttg ttgaatttgc 1301 aaaaagatga agagttggac aaacagatgt ttctccagct tctccagctt 1351 taataacaag attattaagt aatatgaatt accttccagt cttgatatta 1401 gatttagtga atagaggtgt gaaaaccatc cagaattctg agaaattact 1451 ttctctttcg gattcattgc acaagattaa gaaaagtata actttttctt 1501 taatcccata ctatgattcg gaatttgcga aatgtttact acccttaaaa 1551 gggaaagata aatctttttc acaaaaagaa ttatttgctt tatatgttca 1601 tacagaccga atttttaata aattaggtct acttgaattc cataaggcaa 1651 aagatggtga ccaagagaat tcaaaactct ctcagtcgta tttatataat 1701 atccttgaca atagtaaatt accgttaccg gcaattacta gtcaaataga 1751 taatatatta atagcacaaa tgaaaactat tactaacgtt ccaactagga 1801 actggttaaa taatagggac attaatctat taacatttga atgttgacat 1851 tcatatttaa tagatactct ttcagagtta tcttctattt ctaaggttgt 1901 accggattac actatcatta aagataatga aaaaccagac aacttggaaa 1951 tgagacgaaa tctcctcttc atgcaagaac ttattaaaga tcttaagaag 2001 tgaaatccgg gtatatttga aattatacca gaatccatcc tgaaagagga 2051 agaagtttaa tgtgttgcta tcattaaact tacagtattc acatactgtg 2101 cattaacctt atttattttc ctttaaaagc tgcataagca acagtcttag 2151 gtctataaac ggggttaatg c