Sequence of DPV Botrytis cinerea mitovirus 1
Botrytis cinerea mitovirus 1 S isolate CanBc-1c-78 RNA-dependent RNA polymerase (RdRp) gene, complete cds.
ACC No: EF583556
Dated: 2011-01-20 | Length: 2171 | CRC: -997584932
ID EF583556; SV 3; linear; genomic RNA; STD; VRL; 2171 BP.
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AC EF583556;
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DT 01-JAN-2008 (Rel. 94, Created)
DT 20-JAN-2011 (Rel. 107, Last updated, Version 4)
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DE Botrytis cinerea mitovirus 1 S isolate CanBc-1c-78 RNA-dependent RNA
DE polymerase (RdRp) gene, complete cds.
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KW .
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OS Botrytis cinerea mitovirus 1 S
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Narnaviridae;
OC Mitovirus; unclassified Mitovirus.
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RN [1]
RP 1-2171
RX DOI; 10.1094/PHYTO-97-12-1590.
RX PUBMED; 18943720.
RA Wu M.D., Zhang L., Li G.Q., Jiang D.H., Hou M.S., Huang H.C.;
RT "Hypovirulence and Double-Stranded RNA in Botrytis cinerea";
RL Phytopathology 97(12):1590-1599(2007).
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RN [2]
RP 1-2171
RX PUBMED; 20674953.
RA Wu M., Zhang L., Li G., Jiang D., Ghabrial S.A.;
RT "Genome characterization of a debilitation-associated mitovirus infecting
RT the phytopathogenic fungus Botrytis cinerea";
RL Virology 406(1):117-126(2010).
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RN [3]
RP 1-2171
RA Wu M., Li G., Zhang L., Jiang D., Hou M.;
RT ;
RL Submitted (27-APR-2007) to the EMBL/GenBank/DDBJ databases.
RL Department of Plant Protection, Huazhong Agricultural University, Shi Zi
RL Shan, Wuhan, Hubei 430070, China
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RN [4]
RC Sequence update by submitter
RP 1-2171
RA Wu M., Li G., Zhang L., Jiang D., Hou M.;
RT ;
RL Submitted (27-OCT-2008) to the EMBL/GenBank/DDBJ databases.
RL Department of Plant Protection, Huazhong Agricultural University, Shi Zi
RL Shan, Wuhan, Hubei 430070, China
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RN [5]
RC Sequence update by submitter
RP 1-2171
RA Wu M., Li G., Zhang L., Jiang D., Hou M.;
RT ;
RL Submitted (05-APR-2010) to the EMBL/GenBank/DDBJ databases.
RL Department of Plant Protection, Huazhong Agricultural University, Shi Zi
RL Shan, Wuhan, Hubei 430070, China
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CC On Apr 5, 2010 this sequence version replaced gi:209974226.
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FH Key Location/Qualifiers
FH
FT source 1. .2171
FT /organism="Botrytis cinerea mitovirus 1 S"
FT /host="Botrytis cinerea"
FT /isolate="CanBc-1c-78"
FT /mol_type="genomic RNA"
FT /country="China"
FT /db_xref="taxon:463636"
FT gene 477. .2060
FT /gene="RdRp"
FT CDS 477. .2060
FT /codon_start=1
FT /transl_table=4
FT /gene="RdRp"
FT /product="RNA-dependent RNA polymerase"
FT /db_xref="GOA:A9XN83"
FT /db_xref="InterPro:IPR008686"
FT /db_xref="UniProtKB/TrEMBL:A9XN83"
FT /protein_id="ABU84872.2"
FT /translation="MKHLFRIKRKAVIKNSTTRLPDHLWLGYVKVLVWLYDIPSAHRTY
FT FFELLNRIQSLRRNSGDTWTVGYLKESHRLSSHWLSGNPDVCSGSIRVSVRGLPLIIPG
FT RLRNVIYSRNNINITRALLTLLSTFRVMSATPKLKLSTITDPFNGVNETLPSLEVSRAL
FT KNILQGNKFHFKKEDIKDPYSVNRLMDITKADPNGGVSLRNVIIDAYALMKHPKVYASL
FT FKDLFLDYALLGDDICIANKAVADNYLLIMRDLGVEINLSKSLISSTGVVEFAKRWRVG
FT QTDVSPASPALITRLLSNMNYLPVLILDLVNRGVKTIQNSEKLLSLSDSLHKIKKSITF
FT SLIPYYDSEFAKCLLPLKGKDKSFSQKELFALYVHTDRIFNKLGLLEFHKAKDGDQENS
FT KLSQSYLYNILDNSKLPLPAITSQIDNILIAQMKTITNVPTRNWLNNRDINLLTFECWH
FT SYLIDTLSELSSISKVVPDYTIIKDNEKPDNLEMRRNLLFMQELIKDLKKWNPGIFEII
FT PESILKEEEV"
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SQ Sequence 2171 BP; 753 A; 347 C; 349 G; 722 T; 0 other;
ef583556 Length: 2171 20-JAN-2011 Type: N Check: 6203 ..
1 ggcctaacag cgttagctgt taggtgcttt gtagtgatac aaagcatggt
51 ataacccacc ttcatccact tatattttaa tataagttag tgataatccc
101 agacttattg acaataagtc gatcaatgga aacattgatg tttttgatat
151 taatcaaaaa ccaatattgt ttacactgat agtccattct atctattttc
201 aaaccttaag tggtcagata atagaaccta tcagctatgg tgtatatcac
251 cccgtcagac aattgtctta ggaagtacta taactaccgt aactggataa
301 gatgtgaagt tcccttcctt tgtagcttta atgcaattga gactgtcggt
351 catgaagacc aaacaatata aatattatta atatgcgcac aaaatgggag
401 aagataccta agcagatgaa ttaatttctg ctaccaatcg gtattttata
451 gtcaacttta atttaattat aaacaaatga aacatttatt tagaataaaa
501 agaaaagctg ttataaaaaa tagtactaca cgtttacctg atcatttatg
551 attaggatat gtgaaggtac ttgtatgatt gtatgatata ccaagcgcac
601 atcgaaccta tttctttgaa cttctaaaca gaattcaaag tcttaggcgg
651 aacagtggtg atacttgaac tgtaggatat cttaaagaat cccacagatt
701 gagttctcac tgactatcag gtaatcctga tgtctgttcc gggtcaattc
751 gagtttctgt acgaggacta cctttgatta ttccaggtag attaagaaat
801 gttatatatt ctcgaaataa tattaatatt actcgagcat tgttaacact
851 cttatctact ttccgtgtaa tgtctgctac gcctaagcta aaacttagca
901 caataacaga cccatttaat ggagttaatg agactcttcc ttctttggaa
951 gtttctcgtg ctctaaaaaa tatattacaa ggaaataaat tccattttaa
1001 gaaagaggat ataaaagatc cttattctgt gaatagactt atggacataa
1051 caaaagcaga tcctaatggt ggtgtatcac ttcggaatgt tattattgat
1101 gcatatgcat taatgaaaca tcctaaagta tatgcttcac tatttaagga
1151 cttgtttcta gattacgcac ttttaggaga tgatatctgt atagctaata
1201 aagctgtagc agataattat cttttaatta tgcgtgatct aggggttgag
1251 attaacctat ctaaatcttt gatttcatca actggtgttg ttgaatttgc
1301 aaaaagatga agagttggac aaacagatgt ttctccagct tctccagctt
1351 taataacaag attattaagt aatatgaatt accttccagt cttgatatta
1401 gatttagtga atagaggtgt gaaaaccatc cagaattctg agaaattact
1451 ttctctttcg gattcattgc acaagattaa gaaaagtata actttttctt
1501 taatcccata ctatgattcg gaatttgcga aatgtttact acccttaaaa
1551 gggaaagata aatctttttc acaaaaagaa ttatttgctt tatatgttca
1601 tacagaccga atttttaata aattaggtct acttgaattc cataaggcaa
1651 aagatggtga ccaagagaat tcaaaactct ctcagtcgta tttatataat
1701 atccttgaca atagtaaatt accgttaccg gcaattacta gtcaaataga
1751 taatatatta atagcacaaa tgaaaactat tactaacgtt ccaactagga
1801 actggttaaa taatagggac attaatctat taacatttga atgttgacat
1851 tcatatttaa tagatactct ttcagagtta tcttctattt ctaaggttgt
1901 accggattac actatcatta aagataatga aaaaccagac aacttggaaa
1951 tgagacgaaa tctcctcttc atgcaagaac ttattaaaga tcttaagaag
2001 tgaaatccgg gtatatttga aattatacca gaatccatcc tgaaagagga
2051 agaagtttaa tgtgttgcta tcattaaact tacagtattc acatactgtg
2101 cattaacctt atttattttc ctttaaaagc tgcataagca acagtcttag
2151 gtctataaac ggggttaatg c