Sequence of DPV Botrytis cinerea mitovirus 1

Botrytis cinerea mitovirus 1 S isolate CanBc-1c-78 RNA-dependent RNA polymerase (RdRp) gene, complete cds.

ACC No: EF583556

Dated: 2011-01-20 | Length: 2171 | CRC: -997584932

                
ID   EF583556; SV 3; linear; genomic RNA; STD; VRL; 2171 BP.
XX
AC   EF583556;
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DT   01-JAN-2008 (Rel. 94, Created)
DT   20-JAN-2011 (Rel. 107, Last updated, Version 4)
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DE   Botrytis cinerea mitovirus 1 S isolate CanBc-1c-78 RNA-dependent RNA
DE   polymerase (RdRp) gene, complete cds.
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KW   .
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OS   Botrytis cinerea mitovirus 1 S
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Narnaviridae;
OC   Mitovirus; unclassified Mitovirus.
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RN   [1]
RP   1-2171
RX   DOI; 10.1094/PHYTO-97-12-1590.
RX   PUBMED; 18943720.
RA   Wu M.D., Zhang L., Li G.Q., Jiang D.H., Hou M.S., Huang H.C.;
RT   "Hypovirulence and Double-Stranded RNA in Botrytis cinerea";
RL   Phytopathology 97(12):1590-1599(2007).
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RN   [2]
RP   1-2171
RX   PUBMED; 20674953.
RA   Wu M., Zhang L., Li G., Jiang D., Ghabrial S.A.;
RT   "Genome characterization of a debilitation-associated mitovirus infecting
RT   the phytopathogenic fungus Botrytis cinerea";
RL   Virology 406(1):117-126(2010).
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RN   [3]
RP   1-2171
RA   Wu M., Li G., Zhang L., Jiang D., Hou M.;
RT   ;
RL   Submitted (27-APR-2007) to the EMBL/GenBank/DDBJ databases.
RL   Department of Plant Protection, Huazhong Agricultural University, Shi Zi
RL   Shan, Wuhan, Hubei 430070, China
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RN   [4]
RC   Sequence update by submitter
RP   1-2171
RA   Wu M., Li G., Zhang L., Jiang D., Hou M.;
RT   ;
RL   Submitted (27-OCT-2008) to the EMBL/GenBank/DDBJ databases.
RL   Department of Plant Protection, Huazhong Agricultural University, Shi Zi
RL   Shan, Wuhan, Hubei 430070, China
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RN   [5]
RC   Sequence update by submitter
RP   1-2171
RA   Wu M., Li G., Zhang L., Jiang D., Hou M.;
RT   ;
RL   Submitted (05-APR-2010) to the EMBL/GenBank/DDBJ databases.
RL   Department of Plant Protection, Huazhong Agricultural University, Shi Zi
RL   Shan, Wuhan, Hubei 430070, China
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CC   On Apr 5, 2010 this sequence version replaced gi:209974226.
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FH   Key             Location/Qualifiers
FH
FT   source          1. .2171
FT                   /organism="Botrytis cinerea mitovirus 1 S"
FT                   /host="Botrytis cinerea"
FT                   /isolate="CanBc-1c-78"
FT                   /mol_type="genomic RNA"
FT                   /country="China"
FT                   /db_xref="taxon:463636"
FT   gene            477. .2060
FT                   /gene="RdRp"
FT   CDS             477. .2060
FT                   /codon_start=1
FT                   /transl_table=4
FT                   /gene="RdRp"
FT                   /product="RNA-dependent RNA polymerase"
FT                   /db_xref="GOA:A9XN83"
FT                   /db_xref="InterPro:IPR008686"
FT                   /db_xref="UniProtKB/TrEMBL:A9XN83"
FT                   /protein_id="ABU84872.2"
FT                   /translation="MKHLFRIKRKAVIKNSTTRLPDHLWLGYVKVLVWLYDIPSAHRTY
FT                   FFELLNRIQSLRRNSGDTWTVGYLKESHRLSSHWLSGNPDVCSGSIRVSVRGLPLIIPG
FT                   RLRNVIYSRNNINITRALLTLLSTFRVMSATPKLKLSTITDPFNGVNETLPSLEVSRAL
FT                   KNILQGNKFHFKKEDIKDPYSVNRLMDITKADPNGGVSLRNVIIDAYALMKHPKVYASL
FT                   FKDLFLDYALLGDDICIANKAVADNYLLIMRDLGVEINLSKSLISSTGVVEFAKRWRVG
FT                   QTDVSPASPALITRLLSNMNYLPVLILDLVNRGVKTIQNSEKLLSLSDSLHKIKKSITF
FT                   SLIPYYDSEFAKCLLPLKGKDKSFSQKELFALYVHTDRIFNKLGLLEFHKAKDGDQENS
FT                   KLSQSYLYNILDNSKLPLPAITSQIDNILIAQMKTITNVPTRNWLNNRDINLLTFECWH
FT                   SYLIDTLSELSSISKVVPDYTIIKDNEKPDNLEMRRNLLFMQELIKDLKKWNPGIFEII
FT                   PESILKEEEV"
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SQ   Sequence 2171 BP; 753 A; 347 C; 349 G; 722 T; 0 other;

ef583556 Length: 2171  20-JAN-2011  Type: N  Check: 6203  ..

       1  ggcctaacag cgttagctgt taggtgcttt gtagtgatac aaagcatggt
      51  ataacccacc ttcatccact tatattttaa tataagttag tgataatccc
     101  agacttattg acaataagtc gatcaatgga aacattgatg tttttgatat
     151  taatcaaaaa ccaatattgt ttacactgat agtccattct atctattttc
     201  aaaccttaag tggtcagata atagaaccta tcagctatgg tgtatatcac
     251  cccgtcagac aattgtctta ggaagtacta taactaccgt aactggataa
     301  gatgtgaagt tcccttcctt tgtagcttta atgcaattga gactgtcggt
     351  catgaagacc aaacaatata aatattatta atatgcgcac aaaatgggag
     401  aagataccta agcagatgaa ttaatttctg ctaccaatcg gtattttata
     451  gtcaacttta atttaattat aaacaaatga aacatttatt tagaataaaa
     501  agaaaagctg ttataaaaaa tagtactaca cgtttacctg atcatttatg
     551  attaggatat gtgaaggtac ttgtatgatt gtatgatata ccaagcgcac
     601  atcgaaccta tttctttgaa cttctaaaca gaattcaaag tcttaggcgg
     651  aacagtggtg atacttgaac tgtaggatat cttaaagaat cccacagatt
     701  gagttctcac tgactatcag gtaatcctga tgtctgttcc gggtcaattc
     751  gagtttctgt acgaggacta cctttgatta ttccaggtag attaagaaat
     801  gttatatatt ctcgaaataa tattaatatt actcgagcat tgttaacact
     851  cttatctact ttccgtgtaa tgtctgctac gcctaagcta aaacttagca
     901  caataacaga cccatttaat ggagttaatg agactcttcc ttctttggaa
     951  gtttctcgtg ctctaaaaaa tatattacaa ggaaataaat tccattttaa
    1001  gaaagaggat ataaaagatc cttattctgt gaatagactt atggacataa
    1051  caaaagcaga tcctaatggt ggtgtatcac ttcggaatgt tattattgat
    1101  gcatatgcat taatgaaaca tcctaaagta tatgcttcac tatttaagga
    1151  cttgtttcta gattacgcac ttttaggaga tgatatctgt atagctaata
    1201  aagctgtagc agataattat cttttaatta tgcgtgatct aggggttgag
    1251  attaacctat ctaaatcttt gatttcatca actggtgttg ttgaatttgc
    1301  aaaaagatga agagttggac aaacagatgt ttctccagct tctccagctt
    1351  taataacaag attattaagt aatatgaatt accttccagt cttgatatta
    1401  gatttagtga atagaggtgt gaaaaccatc cagaattctg agaaattact
    1451  ttctctttcg gattcattgc acaagattaa gaaaagtata actttttctt
    1501  taatcccata ctatgattcg gaatttgcga aatgtttact acccttaaaa
    1551  gggaaagata aatctttttc acaaaaagaa ttatttgctt tatatgttca
    1601  tacagaccga atttttaata aattaggtct acttgaattc cataaggcaa
    1651  aagatggtga ccaagagaat tcaaaactct ctcagtcgta tttatataat
    1701  atccttgaca atagtaaatt accgttaccg gcaattacta gtcaaataga
    1751  taatatatta atagcacaaa tgaaaactat tactaacgtt ccaactagga
    1801  actggttaaa taatagggac attaatctat taacatttga atgttgacat
    1851  tcatatttaa tagatactct ttcagagtta tcttctattt ctaaggttgt
    1901  accggattac actatcatta aagataatga aaaaccagac aacttggaaa
    1951  tgagacgaaa tctcctcttc atgcaagaac ttattaaaga tcttaagaag
    2001  tgaaatccgg gtatatttga aattatacca gaatccatcc tgaaagagga
    2051  agaagtttaa tgtgttgcta tcattaaact tacagtattc acatactgtg
    2101  cattaacctt atttattttc ctttaaaagc tgcataagca acagtcttag
    2151  gtctataaac ggggttaatg c