Sequence of DPV RD114 retrovirus
RD114 retrovirus isolate SC3C, complete genome.
ACC No: EU030001
Dated: 2007-08-05 | Length: 8406 | CRC: 1608764611
ID EU030001; SV 1; linear; genomic DNA; STD; VRL; 8406 BP.
XX
AC EU030001;
XX
DT 05-AUG-2007 (Rel. 92, Created)
DT 05-AUG-2007 (Rel. 92, Last updated, Version 1)
XX
DE RD114 retrovirus isolate SC3C, complete genome.
XX
KW .
XX
OS RD114 retrovirus
OC Viruses; Retro-transcribing viruses; Retroviridae; Orthoretrovirinae;
OC Gammaretrovirus; unclassified Gammaretrovirus.
XX
RN [1]
RP 1-8406
RA Ghani K., Caron M.-C., Caruso M.;
RT "RD114-based retroviral vectors for gene therapy";
RL Unpublished.
XX
RN [2]
RP 1-8406
RA Ghani K., Caron M.-C., Caruso M.;
RT ;
RL Submitted (11-JUL-2007) to the EMBL/GenBank/DDBJ databases.
RL Medical Biology, Laval University, 9, rue McMahon, Quebec, QC G1R 2J6,
RL Canada
XX
FH Key Location/Qualifiers
FH
FT source 1. .8406
FT /organism="RD114 retrovirus"
FT /isolate="SC3C"
FT /mol_type="genomic DNA"
FT /country="USA"
FT /proviral
FT /db_xref="taxon:11834"
FT LTR 1. .482
FT gene 947. .6166
FT /gene="gag"
FT CDS 947. .6166
FT /codon_start=1
FT /transl_except=(pos:2597. .2599,aa:Glu)
FT /gene="gag"
FT /product="gag-pol precursor polyprotein"
FT /protein_id="ABS71856.1"
FT /translation="MGQTLTTPLTLTLTHFSDVQARAHNLSLEVRKGRWRTYCSSEWPT
FT LSVGWPRDGTFDLSIILQVKTKVMDPGPRGHPDQIAYILTWEDLIRNPPAWVKPFLPSC
FT PLSQSTLLPLKTSKDRASTQPSAPPKPPKPVLPDESQKDPPLLDALSSPPHNPLLQPPP
FT YNPPLAPALTPVGPTSPPASSSSSLSPTSSPACTSAPSSTPAPPDLTPQTPPQTPRLRL
FT RRLDDPNGPPTWQSSLFPLRTVNRTVQYWPFSASDLYNWKTHNPSFSQEPQALTSLIES
FT ILLTHQPTWDDCQQLLQVLLTTEERQRVLLEARKNVPGPGGFPTQLPNEIDEGFPLTRP
FT DWDYETAPGRESLRIYRQALLAGLKGAGKRPTNLAKVRTIIQGKEESPAAFMERLLEGF
FT RMYTPFTPEAPEHKATVAMSFIDQAASDIKGKLQRLDGIQTYGLQELVREAEKVYNKRE
FT TPEEKEARLAKEQEAREERRDRKRDKHLTKILAAVVTENRTGKSGETKRRPKIEKDQCA
FT YCKERGHWIKDCPKRPRDSKKSTPVLTLGEESEEGRQGSGAPPEPRLTLSVGGHPTTFL
FT VDTGAQHSVLTKANGPLSSRTSWVQGATGRKIHKWTNRRTVDLGQGTVTHSFLVVPECP
FT YPLLGRDLLTKLGAQIHFSETGAQVLNRDGQPIQVLTVSLHDEHRLFETPVTTNLLEAW
FT LQDFPQAWAETGGLGRAKCQAPIIIDLKPTAMPVSIRQYPMSKEAHMGIQPHITRFLEL
FT GVLRPCRSPWNTPLLPVKKPGTRDYRPVQDLREVNKRTMDIHPTVPNPYNLLSTLSPDR
FT TWYTVLDLKDAFFCLPLAPQSQELFAFEWRDPERGISGQLTWTRLPQGFKNSPTLFDEA
FT LHRDLTDFRTQHPEVTLLQYVDDLLLAAPTEEACTRGTKHLLRELGDKGYRASAKKAQI
FT CQTKVTYLGYILSEGKRWLTPGRIETVARIPPPQSPREVREFLGTAGFCRLWIPGFAEL
FT AAPLYALTKESAPFTWQEKHQSAFEALKEALLSAPALGLPDTSKPFTLFIDEKQGIAKG
FT VLTQKLGPWKRPVAYLSKKLDPVAAGWPPCLRIMAATAMLVKDSAKLTLGQPLTVITPH
FT ALEAIVRQPPDRWITNARLTHYQALLLDTDRVQFGPPVTLNPATLLPAPKDQQSAHDCR
FT QVLAETHGTREDLKDQELPDADHSWYTDGSSYIDSGTRRAGAAVVDGHHIIWAQSLPPG
FT TSAQKAELIALTKALELSEGKKANIYTDSRYAFATAHTHGSIYERRGLLTSEGKEIKNK
FT AEIIALLKALFLPRRVAIIHCPGHQKGQDPIATGNRQADQVARQVAVAETLTLTKLEET
FT NLTTNKYAYTPEDQEEAKAIGAILNQDTKDWEKEGKIVLPRKEALAMIQQMHAWTHLSN
FT RKLKSLIEKTDFLIPKAGTLIEQVTSACKVCQQVNAGATRVPEGKRTRGNRPGVYWEID
FT FTEVKPHYAGYKYLLVFVDTFSGWVEAYPTRQETAHVVAKKILEEIFPRFGLPKVIGSD
FT NGPAFVSQVSQGLARTLGINWKLHCAYRPQSSGQVERMNRTIKETLTKLTLETGLKDWR
FT RLLSLALLRARNTPNRFGLTPYEILYGGPPPLSTLLNSFSPSDPKTDLQARLKGLQAVQ
FT AQIWTPLAELYRPGHPQTSHPFQVGDSVYVRRHRSQGLEPRWKGPYIVLLTTPTAIKVD
FT GIAAWIHASHAKAAPKTPGPETPKTWKLRRSENPLKIRLSRV"
FT CDS 6201. .7898
FT /codon_start=1
FT /product="envelope glycoprotein"
FT /protein_id="ABS71857.1"
FT /translation="MKLPTGMVILCSLIIVRAGFDDPRKAIALVQKQHGKPCECSGGQV
FT SEAPPNSIQQVTCPGKTAYLMTNQKWKCRVTPKNLTPSGGELQNCPCNTFQDSMHSSCY
FT TEYRQCRANNKTYYTATLLKIRSGSLNEVQILQNPNQLLQSPCRGSINQPVCWSATAPI
FT HISDGGGPLDTKRVWTVQKRLEQIHKAMHPELQYHPLALPKVRDDLSLDARTFDILNTT
FT FRLLQMSNFSLAQDCWLCLKLGTPTPLAIPTPSLTYSLADSLANASCQIIPPLLVQPMQ
FT FSNSSCLSSPFINDTEQIDLGAVTFTNCTSVANVSSPLCALNGSVFLCGNNMAYTYLPQ
FT NWTGLCVQASLLPDIDIIPGDEPVPIPAIDHYIHRPKRAVQFIPLLAGLGITAAFTTGA
FT TGLGVSVTQYTKLSHQLISDVQVLSGTIQDLQDQVDSLAEVVLQNRRGLDLLTAEQGGI
FT CLALQEKCCFYANKSGIVRNKIRTLQEELQKRRESLASNPLWTGLQGFLPYLLPLLGPL
FT LTLLLILTIGPCVFSRLMAFINDRLNVVHAMVLAQQYQALKAEEEAQD"
FT LTR 7925. .8406
XX
SQ Sequence 8406 BP; 2236 A; 2488 C; 1902 G; 1780 T; 0 other;
eu030001 Length: 8406 05-AUG-2007 Type: N Check: 9744 ..
1 tgagaagtca gaacccccca cctttgctac ataaataacc gctttcattt
51 cgcttctgta aaaccgctta tgcgccccac cctaaccgct ttcatttcgc
101 ttctgtaaaa ccgcttatgc gccccaccct agccggaaag tccccagccg
151 ctacgcaacc cgggccccga gttgcatcag ccgcttcgca acccgggctc
201 cgagttgcat cagccgaaag aaacttcatt tcccaagctt ccccgggacg
251 aaattaccca caaccccaac caccaccgag cagagagcct atcgccagcc
301 tgtatgcaaa tgtaactcaa aatggtataa aagacctgta accccgttta
351 tcggggctct cccgctttct aacactgggg agccctggtg caccagtaaa
401 gactctctgc cgacgtcgga gtgccgcgtg gttctttgcg ccaactctca
451 ttccataggg cctaggagtt tggctcctaa catttggtgc attggccggg
501 aaaccgaggg aaggcaagag aaccccggcc ccgtcggtgg atgactctcc
551 ggcccgggcc actgacggac tgactgaaga cagacttctg tgcctttgtc
601 tgcacacagg tattgtgttc tatgttttgt ctctgaactg tgaattctga
651 ggccggccgg ccacctccgt aggagtgttg aaggaggaca gacgtgtcct
701 gaaccttcac accccagccc cgagggacgc ctcggtggtg tttgtagggg
751 agaactgaca agttcgtcag actccccaaa tccgtaggca ggcctcccct
801 gccatctgaa tctgaatact ggccgcggct ccttggttat tgtctagtct
851 gtgttgtctg gtctgtgtcg acattgtagt catctttgtg tatgtgtgtg
901 taagtgtgct ggtgtggacg cgtggacagg acaggacgac acagccatgg
951 gacagacatt gactactcct ctaactttga ctctgactca tttctcggac
1001 gtccaagcaa gagctcacaa tctttccctt gaggttcgga aaggtcgatg
1051 gcgaacttat tgttcatcag agtggcccac cctatccgta gggtggcccc
1101 gggatgggac ttttgacctc tctattatat tacaggttaa gacgaaggta
1151 atggatcccg gaccacgagg tcatccagat caaatagcct atatcctcac
1201 gtgggaggat ctcattcgga atcctccggc atgggtgaaa cccttcctcc
1251 cttcctgccc cctatctcag tctacccttc tccccctgaa aacctcaaaa
1301 gaccgagcct caacccaacc ttcagcccca cccaaaccgc ccaaaccagt
1351 tcttcctgat gagtcccaaa aggaccctcc tctcctagac gctttgtcct
1401 cgccgcctca caaccccctc ctacagcctc caccctataa tccgcccctg
1451 gcccccgcct tgaccccggt gggccctacg tcccctcctg cctccagttc
1501 ctcctccctc tccccaactt cttcccccgc ctgtacgtca gccccgtcct
1551 ctaccccagc cccacccgat ctaactcccc agaccccacc tcagaccccc
1601 cgcctccgtc tccggcgatt ggatgaccca aacggccctc ccacttggca
1651 atcttccctg tttcctcttc ggacagtcaa ccggactgtc caatattggc
1701 cattctctgc ctccgatctt tataattgga aaactcataa cccttccttt
1751 tcccaagaac cccaggccct aacctcactg atagaatcca tcctcctcac
1801 acaccagccc acctgggacg actgccagca actcctacag gtccttttga
1851 ctacagagga aaggcaacga gttctcctgg aggcccggaa aaatgtgcca
1901 gggcctggag gctttccaac ccagctcccc aatgaaatag atgaggggtt
1951 tccccttact cgcccggact gggactatga aacggctcca ggtagggaga
2001 gtctccgaat ctatcgccag gctctgttgg cgggtctcaa gggggcagga
2051 aaacggccca ccaatttggc caaggtaaga actataattc aaggaaaaga
2101 ggaaagcccc gcagccttta tggaacggct tctagagggg tttcggatgt
2151 atactccatt tacgcccgaa gctccagaac ataaggctac agtggccatg
2201 tcgttcatag atcaggcagc atccgatata aaaggaaaac tccaaaggtt
2251 agatgggatc caaacctatg ggttgcaaga actagttagg gaggcagaaa
2301 aggtatataa caagagggaa actccagaag aaaaggaggc taggctagca
2351 aaagagcagg aagcacggga ggaacgaaga gatcgaaaga gagataaaca
2401 tctaactaaa atcctggcag ctgtagtgac agaaaataga acaggaaagt
2451 caggggaaac gaagaggcgg cccaaaatag aaaaagacca atgtgcctat
2501 tgcaaagagc gcgggcactg gatcaaagac tgccctaagc gccctagaga
2551 ctcaaagaaa tctacccccg tactcacctt gggcgaagag agcgagtagg
2601 gacgtcaggg ctctggagcc ccccccgagc cccggctaac tttatctgta
2651 ggggggcatc ccaccacctt cctggtggac acgggagctc aacactcggt
2701 cttaaccaag gcaaatgggc ccctgtcctc gcgtacctcc tgggtccaag
2751 gagcgacagg aaggaaaatt cacaaatgga ctaaccgccg cacggttgac
2801 ctagggcaag ggacagtgac acactccttt ctggtggtac ccgaatgccc
2851 gtaccccctt ctgggacgag acctcctgac caagcttgga gcccagatac
2901 acttctccga aacgggggcc caagtgctaa accgggatgg ccagcctatc
2951 caagtcttga ctgtgtcctt acacgacgaa catagacttt ttgaaacccc
3001 ggtcaccact aacctcctcg aagcctggct gcaggacttt ccccaggcct
3051 gggcagaaac gggagggctc ggtcgagcca aatgtcaggc cccaatcata
3101 attgacctaa agcccacggc aatgcctgta tctatcagac agtatcccat
3151 gagcaaggag gctcatatgg gcattcagcc acacattacc aggtttctag
3201 agcttggggt cctgcgacct tgccgctcac cttggaatac ccctctctta
3251 ccagtgaaaa aacctggtac tcgggactac aggcccgtcc aagacttaag
3301 ggaagtcaac aaaaggacta tggatatcca tcctacggtc cccaatccct
3351 ataacttgct cagcactctg agcccagacc gcacctggta cacagtactg
3401 gacctaaaag atgcattctt ttgcttaccc ttggcccccc agagccagga
3451 actgtttgct ttcgaatgga gggaccctga aagaggaatc tcaggccaat
3501 taacctggac ccgcttaccc caggggttca aaaactcccc cactctcttt
3551 gatgaggctc tccacaggga cctaactgac ttccggactc aacacccaga
3601 agtaactcta ctccaatatg tggatgacct tcttctggcc gcccccacag
3651 aggaagcctg cacacgaggt accaaacatc tgcttcgaga attgggagac
3701 aaaggatacc gggcatccgc taagaaggcc cagatttgcc aaaccaaagt
3751 aacctatctg gggtacatac taagtgaggg gaaaagatgg ctcacccctg
3801 ggcgaataga aactgtggct cgcattccgc cgccccagag ccccagagag
3851 gtacgtgaat tcctgggaac tgctgggttc tgtcgcttat ggatacctgg
3901 gttcgctgag ctagccgccc ccctctatgc cctcacgaaa gagagtgcac
3951 ccttcacctg gcaggaaaaa catcagtcag cctttgaggc cctaaaagag
4001 gccctccttt ccgccccggc tctcgggttg ccagacacct ccaagccctt
4051 taccctcttc atagacgaga aacaaggaat tgccaaagga gttctaaccc
4101 aaaaactagg gccctggaag agaccagtag catacctgtc caaaaagttg
4151 gaccctgtgg cagcggggtg gcccccatgt cttcgtatca tggcagccac
4201 tgctatgctg gtcaaggact ctgccaaatt aacccttgga cagccactaa
4251 ctgttatcac cccgcatgct ttagaggcca tagtgcggca accaccagac
4301 cgatggataa ccaacgcacg cctaactcac taccaggccc tcctactgga
4351 cacagaccgc gtccaatttg gacctccggt taccttgaac cctgccacgt
4401 tgctaccggc accgaaagac caacagagcg cacacgattg tcggcaagta
4451 ctggctgaga cccatgggac acgggaagat cttaaagatc aagagctccc
4501 agatgcggat cactcttggt atacggacgg gagcagttac atcgactcag
4551 gtacccggag ggcgggagcg gcggtagtag atggccacca catcatatgg
4601 gcacaatcac tacctcctgg cacgtctgcc caaaaggctg agctgatagc
4651 actcaccaag gccctagagc tatccgaagg gaaaaaggct aacatatata
4701 cagatagccg atatgccttt gcaacggctc atacacatgg gagtatttat
4751 gaaagaaggg gcctactaac ctcagaagga aaagaaatta aaaataaagc
4801 tgaaatcatt gcattattaa aggccctttt tcttccccgg agagtagcca
4851 taattcattg ccccgggcat cagaaaggac aagacccaat tgcaacagga
4901 aatagacagg cagaccaagt agccaggcaa gtcgctgtgg cagaaacgtt
4951 gactttgacc aagcttgaag aaaccaatct tacgaccaac aaatatgctt
5001 acaccccaga agaccaggaa gaggcaaagg ccataggggc tatactgaat
5051 caggacacta aagactggga aaaagaagga aagatagtcc ttccccgaaa
5101 ggaagcccta gcaatgatcc aacaaatgca cgcctggaca catttaagta
5151 atcggaagct gaagtcactg attgaaaaga ctgacttctt aatccctaag
5201 gcaggcaccc tcatagaaca ggtgacctcc gcctgtaagg tctgtcaaca
5251 ggtaaacgct ggggctaccc gagtgccaga aggaaaacgg actcgtggta
5301 accgcccagg agtctattgg gaaatagatt ttactgaagt aaagcctcac
5351 tatgcggggt ataagtacct attagtgttt gtagacacct tttcaggatg
5401 ggtagaagcc taccccaccc gacaggaaac ggcacacgtg gtagccaaga
5451 agattttaga agaaatcttc cccagatttg gacttcccaa ggtaatcggg
5501 tcagataacg ggccggcctt cgtttcccag gtaagtcagg ggctcgccag
5551 gacactgggg attaattgga aattacactg tgcatatagg ccccagagct
5601 caggacaggt agaaagaatg aatagaacaa taaaagagac ccttactaaa
5651 ttgaccttag agactggctt aaaagattgg agacgcctcc tatctctggc
5701 tttgttaaga gccagaaata cgcccaaccg tttcgggctc accccatatg
5751 aaatccttta tgggggaccc ccccctttgt caaccttgct caattccttc
5801 tccccctccg atcctaagac tgatttacaa gcccgactaa aagggctgca
5851 agcggtgcag gcccaaatct ggacacccct ggccgaattg taccggccag
5901 gacatccaca aactagccac ccatttcagg tgggagactc cgtgtacgtc
5951 cggcggcacc gctctcaagg attggagcct cgttggaagg gaccttacat
6001 cgtcctgctg accacgccca ccgccataaa ggttgacggg atcgccgcct
6051 ggattcacgc atcgcacgcc aaggcagccc caaaaacccc tggaccagaa
6101 actcccaaaa cctggaagct ccgccgttcg gagaaccctc ttaagataag
6151 actctcccgt gtctgactgc taatccacct tgtccctgta ctaacccaaa
6201 atgaaactcc caacaggaat ggtcatttta tgtagcctaa taatagttcg
6251 ggcagggttt gacgaccccc gcaaggctat cgcattagta caaaaacaac
6301 atggtaaacc atgcgaatgc agcggagggc aggtatccga ggccccaccg
6351 aactccatcc aacaggtaac ttgcccaggc aagacggcct acttaatgac
6401 caaccaaaaa tggaaatgca gagtcactcc aaaaaatctc acccctagcg
6451 ggggagaact ccagaactgc ccctgtaaca ctttccagga ctcgatgcac
6501 agttcttgtt atactgaata ccggcaatgc agggcgaata ataagacata
6551 ctacacggcc accttgctta aaatacggtc tgggagcctc aacgaggtac
6601 agatattaca aaaccccaat cagctcctac agtccccttg taggggctct
6651 ataaatcagc ccgtttgctg gagtgccaca gcccccatcc atatctccga
6701 tggtggagga cccctcgata ctaagagagt gtggacagtc caaaaaaggc
6751 tagaacaaat tcataaggct atgcatcctg aacttcaata ccacccctta
6801 gccctgccca aagtcagaga tgaccttagc cttgatgcac ggacttttga
6851 tatcctgaat accactttta ggttactcca gatgtccaat tttagccttg
6901 cccaagattg ttggctctgt ttaaaactag gtacccctac ccctcttgcg
6951 atacccactc cctctttaac ctactcccta gcagactccc tagcgaatgc
7001 ctcctgtcag attatacctc ccctcttggt tcaaccgatg cagttctcca
7051 actcgtcctg tttatcttcc cctttcatta acgatacgga acaaatagac
7101 ttaggtgcag tcacctttac taactgcacc tctgtagcca atgtcagtag
7151 tcctttatgt gccctaaacg ggtcagtctt cctctgtgga aataacatgg
7201 catacaccta tttaccccaa aactggacag gactttgcgt ccaagcctcc
7251 ctcctccccg acattgacat catcccgggg gatgagccag tccccattcc
7301 tgccattgat cattatatac atagacctaa acgagctgta cagttcatcc
7351 ctttactagc tggactggga atcaccgcag cattcaccac cggagctaca
7401 ggcctaggtg tctccgtcac ccagtataca aaattatccc atcagttaat
7451 atctgatgtc caagtcttat ccggtaccat acaagattta caagaccagg
7501 tagactcgtt agctgaagta gttctccaaa ataggagggg actggaccta
7551 ctaacggcag aacaaggagg aatttgttta gccttacaag aaaaatgctg
7601 tttttatgct aacaagtcag gaattgtgag aaacaaaata agaaccctac
7651 aagaagaatt acaaaaacgc agggaaagcc tggcatccaa ccctctctgg
7701 accgggctgc agggctttct tccgtacctc ctacctctcc tgggacccct
7751 actcaccctc ctactcatac taaccattgg gccatgcgtt ttcagtcgcc
7801 tcatggcctt cattaatgat agacttaatg ttgtacatgc catggtgctg
7851 gcccagcaat accaagcact caaagctgag gaagaagctc aggattgagc
7901 ttccgggaca aaagcagggg ggaatgagaa gtcagaaccc cccacctttg
7951 ctacataaat aaccgctttc atttcgcttc tgtaaaaccg cttatgcgcc
8001 ccaccctaac cgctttcatt tcgcttctgt aaaaccgctt atgcgcccca
8051 ccctagccgg aaagtcccca gccgctacgc aacccgggcc ccgagttgca
8101 tcagccgctt cgcaacccgg gctccgagtt gcatcagccg aaagaaactt
8151 catttcccaa gcttccccgg gacgaaatta cccacaaccc caaccaccac
8201 cgagcagaga gcctatcgcc agcctgtatg caaatgtaac tcaaaatggt
8251 ataaaagacc tgtaaccccg tttatcgggg ctctcccgct ttctaacact
8301 ggggagccct ggtgcaccag taaagactct ctgccgacgt cggagtgccg
8351 cgtggttctt tgcgccaact ctcattccat agggcctagg agtttggctc
8401 ctaaca