Sequence of DPV Cucumber leaf spot virus
Cucumber leaf spot virus, complete genome.
ACC No: EU127904
Dated: 2007-09-22 | Length: 4431 | CRC: 225830907
ID EU127904; SV 1; linear; genomic RNA; STD; VRL; 4431 BP. XX AC EU127904; XX DT 22-SEP-2007 (Rel. 93, Created) DT 22-SEP-2007 (Rel. 93, Last updated, Version 1) XX DE Cucumber leaf spot virus, complete genome. XX KW . XX OS Cucumber leaf spot virus OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae; OC Aureusvirus. XX RN [1] RP 1-4431 RX DOI; 10.1016/S0168-1702(97)00105-6. RX PUBMED; 9453144. RA Miller J.S., Damude H., Robbins M.A., Reade R.D., Rochon D.M.; RT "Genome structure of cucumber leaf spot virus: sequence analysis suggests RT it belongs to a distinct species within the Tombusviridae"; RL Virus Res. 52(1):51-60(1997). XX RN [2] RP 1-4431 RA Miller J.S., Damude H., Robbins M.A., Reade R.D., Rochon D.M.; RT ; RL Submitted (30-AUG-2007) to the EMBL/GenBank/DDBJ databases. RL Agriculture & Agri-Food Canada, 4200 Hwy 97, Summerland, B.C. V0H 1Z0, RL Canada XX FH Key Location/Qualifiers FH FT source 1. .4431 FT /organism="Cucumber leaf spot virus" FT /mol_type="genomic RNA" FT /country="Canada" FT /virion FT /db_xref="taxon:165432" FT CDS 132. .2348 FT /codon_start=1 FT /transl_except=(pos:798. .800,aa:OTHER) FT /product="P84" FT /note="replicase" FT /protein_id="ABV30916.1" FT /translation="MANMVLSCLVTLILFPFTTMSSLYSLVCRIVNMMLGEIAYLYGDV FT KAGLSFLLKKLTISWIIVVGMILVLSFTVVGFMPSITLYSIILLCIGSKYGGRLPRYIV FT AHYERIKEAWEKGVDDDDCTATPPVECMERIPHKLRPRLACKIAVRAVAKVGLLKRSEA FT NALVYQRVCLDIMESMKMRWHDRLMVLPQAVLACLERPEEVEEVMKAIEASCKGRFDEF FT XGCLLEHRGYNTAVHSVIPDGVLLDHEGMVVRRGLPLSCERKWYSFSSYASTYEYVVHN FT SSLVNVCRGLVERVFCVVRDGKLQRPLRPRKNIFERKLGDVGRKISSIVGFCPAMTRSE FT FCESYSGSRRATYEKARLSLDVLPCTRSDAYLKTFVKAEKINITLKPDPAPRVIQPRDP FT RYNVEVGRYLKPLEPRLMKAIDKLWGERTAIKGYTVEKVGEILYEKSLRFKEPVFVGLD FT ASRFDQHCSRQALEWEHSVYNSIIRDPYLKELLTWQIDNVGTAYLKDGFVRYRVDGCRM FT SGDMNTSMGNYLIMSCLVYQFCKDVGLDASLANCGDDCVLYLEKKQLPLLRHLPNWFES FT MGYSMKVEKPVYNVEEIEFCQQHPVQLSRGWVMVRRPDVCLTKDVCIVRGGMTTDRLQR FT WLYAQRDGGLSLAGDCPVLGQFYNSFPRGESLGELSEYAEAHKFKAGKQYGEITPLSRY FT SFWLAFGLTPDDQLAIEEDLKHWTPEVKLGSEAPRTTLLDYCSR" FT CDS 132. .800 FT /codon_start=1 FT /product="P25" FT /note="replicase associated protein" FT /protein_id="ABV30915.1" FT /translation="MANMVLSCLVTLILFPFTTMSSLYSLVCRIVNMMLGEIAYLYGDV FT KAGLSFLLKKLTISWIIVVGMILVLSFTVVGFMPSITLYSIILLCIGSKYGGRLPRYIV FT AHYERIKEAWEKGVDDDDCTATPPVECMERIPHKLRPRLACKIAVRAVAKVGLLKRSEA FT NALVYQRVCLDIMESMKMRWHDRLMVLPQAVLACLERPEEVEEVMKAIEASCKGRFDEF FT " FT CDS 2374. .3534 FT /codon_start=1 FT /product="P41" FT /note="coat protein" FT /protein_id="ABV30917.1" FT /translation="MEIARTNKNSVVKYVPAAVGAAYQMGKSIVPYAPTIVDALGNVVS FT RATGRKKKSKGKEVQNQIVGGIGAIAAPVSITKRVRGMRPSFRQTKGKVHIVHRELVTS FT VINLVGNFRVNNNVSAQIGQFRINPSNSSLFTWLPTIASNFDSYRFTSIRFVYVPLCAT FT TETGRVSLFWDKDSQDPLPVDRAALSSYGHSNEGPPWAETTLNVPTDGKQRFVTDSNTT FT DRKLVDLGQFAFATYAGGSNNQIGDIYVEYGVEFSEAQPAGGLTQYITKSVGATASTTG FT PSYVVDANINVNATTANVEFFSPGTFLITAVVYGSTIASPSMAGGNGTLIGDLPVVGGS FT NASIWTCVFSTTGVSTSVPTFTQAGTGLTRVQYTITRVNSQTAYQV" FT CDS 3615. .4346 FT /codon_start=1 FT /product="P27" FT /note="movement protein" FT /protein_id="ABV30918.1" FT /translation="MEIQHIDGTFEDSLIVQNEVKKFLISHKTTKAILPLAPYSQLTKW FT KIPKAGFYAPIDVKFVLTPHVSERAQVRGVVKLVDSRDLSPSRELYRSKEFNIGHGLLI FT EGSQLPFCLPVGDYPLQFEVTVLQSQFKETANLYSTSVEWRMMSSTTPLSRVKSVMGAA FT HQPAMKLEPNFKMKLESSKGVSHNQKQRKTTKPNGLDRRGRGNSTVGGSSDASQSQGAQ FT AWGGYHNDLGDSLSEYSVSDL" FT CDS 3746. .4204 FT /codon_start=1 FT /product="P17" FT /note="suppressor of gene silencing" FT /protein_id="ABV30919.1" FT /translation="MENTQGGVLCPNRCKVCSHTTCIRESSGQGGRQASRFTRLITEPR FT IVSEQGIQYRTWIADRGFPIALLSSSGGLSTSIRGHGVAVTVQGDSKSLLNFCRVAYDV FT FNHPVIQSEVCYGRGPSTSDEVRAEFQDEAGIIQGRLPQSETEENNKA" XX SQ Sequence 4431 BP; 1183 A; 909 C; 1146 G; 1193 T; 0 other; eu127904 Length: 4431 22-SEP-2007 Type: N Check: 2597 .. 1 gaatacctac tagaccgtct aaccagcgtg tctgagagtt gcgtagccat 51 acgtataggt attctctcct aatttagggg tttgaagact gggtctagct 101 taatagcgga taaattgtaa cttccagtaa aatggcgaac atggtcctaa 151 gttgcttggt tactctgata ctttttccgt tcacaaccat gtcatcattg 201 tattctcttg tttgcaggat tgtgaacatg atgttgggtg aaattgcgta 251 cctttatgga gatgttaagg ctgggttgag ttttctttta aagaaactca 301 ccatctcttg gataatcgtc gtgggcatga tactggtatt gtcattcact 351 gtcgtggggt ttatgccatc cattaccttg tacagcatta ttttgctatg 401 catagggagt aaatatggcg gaaggctgcc acgatacata gttgcccatt 451 atgagcggat taaggaagcg tgggaaaagg gggttgatga tgatgactgc 501 acagccacac cacctgtgga atgcatggaa aggatcccac ataagttacg 551 tccacggctc gcatgcaaga ttgcagttcg tgctgtggca aaggtggggt 601 tattgaaacg gtctgaagct aatgcccttg tttatcaacg ggtctgtctg 651 gacatcatgg agagcatgaa gatgaggtgg cacgaccgtc tgatggtcct 701 acctcaagcc gtgctagctt gcttagaaag gccggaggaa gtcgaggaag 751 ttatgaaagc cattgaggcg tcctgcaaag gacgcttcga tgagttttag 801 gggtgcctac tagaacatcg tggctacaac acggccgtcc acagtgtcat 851 acctgatgga gtgttgttgg accacgaagg gatggtggtt cgaagaggac 901 tgcccctatc atgtgagcgg aaatggtact ctttttctag ttatgctagc 951 acttatgagt acgttgtgca caattcctca ctcgttaatg tttgtagagg 1001 tctggttgaa cgagtgtttt gcgtcgtgcg agacggtaaa ttgcagcgcc 1051 ctctaagacc aagaaagaat atctttgaga ggaagcttgg tgatgttggt 1101 cgaaaaatca gctctatcgt tgggttctgc cccgctatga cacgcagtga 1151 attctgtgaa tcttatagcg gctcgcgaag ggccacgtat gagaaagcgc 1201 gattgtcctt ggatgttctc ccttgcacta gatctgatgc ttatcttaag 1251 acatttgtga aagcggagaa gatcaatatc accttgaaac cagacccagc 1301 gcccagggtc atacagccac gtgatcctag gtataatgtg gaagtgggac 1351 gttatttgaa gccgttggag ccccgattaa tgaaagcaat cgataaattg 1401 tggggggaaa ggacggcaat taaggggtat actgttgaga aggtagggga 1451 gatcttgtac gagaagagtt tgaggtttaa agaacctgtc tttgtggggc 1501 ttgatgctag ccggtttgac cagcactgct cacgacaggc tttggagtgg 1551 gaacactccg tgtataactc tattattcgt gatccttacc taaaggagtt 1601 gctgacatgg caaattgata atgtgggaac tgcgtatctt aaggatggct 1651 ttgtgcgata tcgtgtcgat ggttgcagga tgtctggtga catgaacacc 1701 agcatgggaa actatctgat tatgtcatgc cttgtatacc aattctgcaa 1751 ggatgttgga ttagatgcca gcctcgcaaa ttgcggggac gattgtgtct 1801 tatatctgga gaaaaagcag ttaccattgc ttaggcacct cccaaattgg 1851 tttgaatcca tgggttattc tatgaaagtg gaaaaacccg tgtacaatgt 1901 ggaggaaatt gagttttgtc aacaacatcc cgttcagctc agcagagggt 1951 gggtaatggt tagaaggcct gatgtctgtt taacaaaaga tgtgtgtatt 2001 gtccgaggag ggatgacaac tgatcggctt cagaggtggt tgtatgccca 2051 acgtgatggg ggtctcagct tagcagggga ctgtcccgtt ctagggcagt 2101 tttacaactc ctttccacgt ggcgagtccc taggggagtt gtcagaatac 2151 gccgaagcac acaaatttaa ggccggaaag caatatggcg aaattactcc 2201 attgtcgagg tactcttttt ggctggcatt tgggttaacc cctgatgacc 2251 agctagctat cgaggaggac cttaaacatt ggacacctga ggtgaagttg 2301 ggaagcgagg cccctcgcac aactttgctg gactattgct caagataact 2351 gaccattatc aagtgagaga agtatggaaa tagcgcgaac taataagaac 2401 agtgttgtga agtatgtacc tgcagcagta ggtgctgctt atcagatggg 2451 taagtccata gtaccttatg caccaacgat tgttgatgca ttaggtaacg 2501 tggtatctcg agcaacaggg cgtaaaaaga aaagtaaagg aaaggaagtt 2551 cagaatcaaa ttgtaggtgg tataggagca attgcagctc ccgttagcat 2601 taccaagcgt gtgcgaggaa tgaggccttc atttaggcag actaaaggga 2651 aagtccatat tgtacatcgt gagctcgtta ccagtgtcat taacctggtg 2701 ggcaactttc gggttaacaa taacgtgagt gcacaaatag ggcaattccg 2751 tattaatccc tctaattcct ccctgtttac ttggttacca accatagcat 2801 caaatttcga ctcatataga ttcacatcaa tcaggtttgt ttatgtgcca 2851 ctatgtgcta ctactgaaac tggtagggtg tcattattct gggataaaga 2901 ttcacaggat ccccttccag ttgacagagc cgctctaagt tcctacggac 2951 attcaaacga aggtcctcca tgggcagaga ctacactcaa tgtgccaact 3001 gatggcaagc aacgttttgt caccgactcg aatacgactg atcgtaagtt 3051 ggttgacctg ggacagtttg cttttgccac ttatgcagga ggtagcaata 3101 accaaattgg agacatatat gttgaatatg gggtagagtt ctctgaggcg 3151 caaccagccg gtggattaac gcaatatatt acaaagtctg tcggggctac 3201 tgcctccacc actggaccta gttatgtcgt agatgctaat attaatgtta 3251 acgccacaac agcaaatgta gaattctttt ctcccggaac cttccttata 3301 accgccgttg tttacggatc cacaatagct tcaccttcca tggcaggtgg 3351 gaatggtacc ttaattggtg atcttccagt tgtgggaggg tcgaatgctt 3401 ccatttggac ttgtgtgttt agcaccacag gggtctctac tagtgtccca 3451 acgtttacac aggcgggcac aggcctaact cgggtgcaat acacgattac 3501 ccgtgtaaat tcacaaactg cgtatcaggt ttaagggcga aagtaggttg 3551 gtgtcggaga cttggcaatg tccgagttta gaccttgtgt ggctcaagaa 3601 gtcttaccag cttcatggaa attcaacata tagatggaac ttttgaggac 3651 tcattgattg ttcaaaacga ggttaaaaag tttctaatat ctcataagac 3701 aaccaaagcc atactaccat tagctcccta ctctcaactc actaaatgga 3751 aaatacccaa ggcggggttc tatgccccaa tagatgtaaa gtttgttctc 3801 acaccacatg tatcagagag agctcaggtc aggggggtcg tcaagctagt 3851 cgattcacga gacttatcac cgagccgaga attgtatcgg agcaaggaat 3901 tcaatatcgg acatggattg ctgatagagg gttcccaatt gcccttttgt 3951 cttccagtgg gggactatcc acttcaattc gaggtcacgg tgttgcagtc 4001 acagttcaag gagacagcaa atctctactc aacttctgtc gagtggcgta 4051 tgatgtcttc aaccaccccg ttatccagag tgaagtctgt tatgggcgcg 4101 gcccatcaac cagcgatgaa gttagagccg aatttcaaga tgaagctgga 4151 atcatccaag ggcgtctccc acaatcagaa acagaggaaa acaacaaagc 4201 ctaatggcct agatcggagg ggtcgtggta atagcaccgt tggtggttct 4251 tcggatgctt ctcagtccca aggcgcacaa gcatgggggg gttaccataa 4301 cgatctagga gacagcttat ccgagtactc tgtgtctgac ttgtagagag 4351 accaccaatg cacaccagaa atgggggcta taagtgtatt ggttcttaat 4401 tttcatccct tgcgtggaaa cacgctagcc c