Sequence of DPV Cucumber leaf spot virus
Cucumber leaf spot virus, complete genome.
ACC No: EU127904
Dated: 2007-09-22 | Length: 4431 | CRC: 225830907
ID EU127904; SV 1; linear; genomic RNA; STD; VRL; 4431 BP.
XX
AC EU127904;
XX
DT 22-SEP-2007 (Rel. 93, Created)
DT 22-SEP-2007 (Rel. 93, Last updated, Version 1)
XX
DE Cucumber leaf spot virus, complete genome.
XX
KW .
XX
OS Cucumber leaf spot virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae;
OC Aureusvirus.
XX
RN [1]
RP 1-4431
RX DOI; 10.1016/S0168-1702(97)00105-6.
RX PUBMED; 9453144.
RA Miller J.S., Damude H., Robbins M.A., Reade R.D., Rochon D.M.;
RT "Genome structure of cucumber leaf spot virus: sequence analysis suggests
RT it belongs to a distinct species within the Tombusviridae";
RL Virus Res. 52(1):51-60(1997).
XX
RN [2]
RP 1-4431
RA Miller J.S., Damude H., Robbins M.A., Reade R.D., Rochon D.M.;
RT ;
RL Submitted (30-AUG-2007) to the EMBL/GenBank/DDBJ databases.
RL Agriculture & Agri-Food Canada, 4200 Hwy 97, Summerland, B.C. V0H 1Z0,
RL Canada
XX
FH Key Location/Qualifiers
FH
FT source 1. .4431
FT /organism="Cucumber leaf spot virus"
FT /mol_type="genomic RNA"
FT /country="Canada"
FT /virion
FT /db_xref="taxon:165432"
FT CDS 132. .2348
FT /codon_start=1
FT /transl_except=(pos:798. .800,aa:OTHER)
FT /product="P84"
FT /note="replicase"
FT /protein_id="ABV30916.1"
FT /translation="MANMVLSCLVTLILFPFTTMSSLYSLVCRIVNMMLGEIAYLYGDV
FT KAGLSFLLKKLTISWIIVVGMILVLSFTVVGFMPSITLYSIILLCIGSKYGGRLPRYIV
FT AHYERIKEAWEKGVDDDDCTATPPVECMERIPHKLRPRLACKIAVRAVAKVGLLKRSEA
FT NALVYQRVCLDIMESMKMRWHDRLMVLPQAVLACLERPEEVEEVMKAIEASCKGRFDEF
FT XGCLLEHRGYNTAVHSVIPDGVLLDHEGMVVRRGLPLSCERKWYSFSSYASTYEYVVHN
FT SSLVNVCRGLVERVFCVVRDGKLQRPLRPRKNIFERKLGDVGRKISSIVGFCPAMTRSE
FT FCESYSGSRRATYEKARLSLDVLPCTRSDAYLKTFVKAEKINITLKPDPAPRVIQPRDP
FT RYNVEVGRYLKPLEPRLMKAIDKLWGERTAIKGYTVEKVGEILYEKSLRFKEPVFVGLD
FT ASRFDQHCSRQALEWEHSVYNSIIRDPYLKELLTWQIDNVGTAYLKDGFVRYRVDGCRM
FT SGDMNTSMGNYLIMSCLVYQFCKDVGLDASLANCGDDCVLYLEKKQLPLLRHLPNWFES
FT MGYSMKVEKPVYNVEEIEFCQQHPVQLSRGWVMVRRPDVCLTKDVCIVRGGMTTDRLQR
FT WLYAQRDGGLSLAGDCPVLGQFYNSFPRGESLGELSEYAEAHKFKAGKQYGEITPLSRY
FT SFWLAFGLTPDDQLAIEEDLKHWTPEVKLGSEAPRTTLLDYCSR"
FT CDS 132. .800
FT /codon_start=1
FT /product="P25"
FT /note="replicase associated protein"
FT /protein_id="ABV30915.1"
FT /translation="MANMVLSCLVTLILFPFTTMSSLYSLVCRIVNMMLGEIAYLYGDV
FT KAGLSFLLKKLTISWIIVVGMILVLSFTVVGFMPSITLYSIILLCIGSKYGGRLPRYIV
FT AHYERIKEAWEKGVDDDDCTATPPVECMERIPHKLRPRLACKIAVRAVAKVGLLKRSEA
FT NALVYQRVCLDIMESMKMRWHDRLMVLPQAVLACLERPEEVEEVMKAIEASCKGRFDEF
FT "
FT CDS 2374. .3534
FT /codon_start=1
FT /product="P41"
FT /note="coat protein"
FT /protein_id="ABV30917.1"
FT /translation="MEIARTNKNSVVKYVPAAVGAAYQMGKSIVPYAPTIVDALGNVVS
FT RATGRKKKSKGKEVQNQIVGGIGAIAAPVSITKRVRGMRPSFRQTKGKVHIVHRELVTS
FT VINLVGNFRVNNNVSAQIGQFRINPSNSSLFTWLPTIASNFDSYRFTSIRFVYVPLCAT
FT TETGRVSLFWDKDSQDPLPVDRAALSSYGHSNEGPPWAETTLNVPTDGKQRFVTDSNTT
FT DRKLVDLGQFAFATYAGGSNNQIGDIYVEYGVEFSEAQPAGGLTQYITKSVGATASTTG
FT PSYVVDANINVNATTANVEFFSPGTFLITAVVYGSTIASPSMAGGNGTLIGDLPVVGGS
FT NASIWTCVFSTTGVSTSVPTFTQAGTGLTRVQYTITRVNSQTAYQV"
FT CDS 3615. .4346
FT /codon_start=1
FT /product="P27"
FT /note="movement protein"
FT /protein_id="ABV30918.1"
FT /translation="MEIQHIDGTFEDSLIVQNEVKKFLISHKTTKAILPLAPYSQLTKW
FT KIPKAGFYAPIDVKFVLTPHVSERAQVRGVVKLVDSRDLSPSRELYRSKEFNIGHGLLI
FT EGSQLPFCLPVGDYPLQFEVTVLQSQFKETANLYSTSVEWRMMSSTTPLSRVKSVMGAA
FT HQPAMKLEPNFKMKLESSKGVSHNQKQRKTTKPNGLDRRGRGNSTVGGSSDASQSQGAQ
FT AWGGYHNDLGDSLSEYSVSDL"
FT CDS 3746. .4204
FT /codon_start=1
FT /product="P17"
FT /note="suppressor of gene silencing"
FT /protein_id="ABV30919.1"
FT /translation="MENTQGGVLCPNRCKVCSHTTCIRESSGQGGRQASRFTRLITEPR
FT IVSEQGIQYRTWIADRGFPIALLSSSGGLSTSIRGHGVAVTVQGDSKSLLNFCRVAYDV
FT FNHPVIQSEVCYGRGPSTSDEVRAEFQDEAGIIQGRLPQSETEENNKA"
XX
SQ Sequence 4431 BP; 1183 A; 909 C; 1146 G; 1193 T; 0 other;
eu127904 Length: 4431 22-SEP-2007 Type: N Check: 2597 ..
1 gaatacctac tagaccgtct aaccagcgtg tctgagagtt gcgtagccat
51 acgtataggt attctctcct aatttagggg tttgaagact gggtctagct
101 taatagcgga taaattgtaa cttccagtaa aatggcgaac atggtcctaa
151 gttgcttggt tactctgata ctttttccgt tcacaaccat gtcatcattg
201 tattctcttg tttgcaggat tgtgaacatg atgttgggtg aaattgcgta
251 cctttatgga gatgttaagg ctgggttgag ttttctttta aagaaactca
301 ccatctcttg gataatcgtc gtgggcatga tactggtatt gtcattcact
351 gtcgtggggt ttatgccatc cattaccttg tacagcatta ttttgctatg
401 catagggagt aaatatggcg gaaggctgcc acgatacata gttgcccatt
451 atgagcggat taaggaagcg tgggaaaagg gggttgatga tgatgactgc
501 acagccacac cacctgtgga atgcatggaa aggatcccac ataagttacg
551 tccacggctc gcatgcaaga ttgcagttcg tgctgtggca aaggtggggt
601 tattgaaacg gtctgaagct aatgcccttg tttatcaacg ggtctgtctg
651 gacatcatgg agagcatgaa gatgaggtgg cacgaccgtc tgatggtcct
701 acctcaagcc gtgctagctt gcttagaaag gccggaggaa gtcgaggaag
751 ttatgaaagc cattgaggcg tcctgcaaag gacgcttcga tgagttttag
801 gggtgcctac tagaacatcg tggctacaac acggccgtcc acagtgtcat
851 acctgatgga gtgttgttgg accacgaagg gatggtggtt cgaagaggac
901 tgcccctatc atgtgagcgg aaatggtact ctttttctag ttatgctagc
951 acttatgagt acgttgtgca caattcctca ctcgttaatg tttgtagagg
1001 tctggttgaa cgagtgtttt gcgtcgtgcg agacggtaaa ttgcagcgcc
1051 ctctaagacc aagaaagaat atctttgaga ggaagcttgg tgatgttggt
1101 cgaaaaatca gctctatcgt tgggttctgc cccgctatga cacgcagtga
1151 attctgtgaa tcttatagcg gctcgcgaag ggccacgtat gagaaagcgc
1201 gattgtcctt ggatgttctc ccttgcacta gatctgatgc ttatcttaag
1251 acatttgtga aagcggagaa gatcaatatc accttgaaac cagacccagc
1301 gcccagggtc atacagccac gtgatcctag gtataatgtg gaagtgggac
1351 gttatttgaa gccgttggag ccccgattaa tgaaagcaat cgataaattg
1401 tggggggaaa ggacggcaat taaggggtat actgttgaga aggtagggga
1451 gatcttgtac gagaagagtt tgaggtttaa agaacctgtc tttgtggggc
1501 ttgatgctag ccggtttgac cagcactgct cacgacaggc tttggagtgg
1551 gaacactccg tgtataactc tattattcgt gatccttacc taaaggagtt
1601 gctgacatgg caaattgata atgtgggaac tgcgtatctt aaggatggct
1651 ttgtgcgata tcgtgtcgat ggttgcagga tgtctggtga catgaacacc
1701 agcatgggaa actatctgat tatgtcatgc cttgtatacc aattctgcaa
1751 ggatgttgga ttagatgcca gcctcgcaaa ttgcggggac gattgtgtct
1801 tatatctgga gaaaaagcag ttaccattgc ttaggcacct cccaaattgg
1851 tttgaatcca tgggttattc tatgaaagtg gaaaaacccg tgtacaatgt
1901 ggaggaaatt gagttttgtc aacaacatcc cgttcagctc agcagagggt
1951 gggtaatggt tagaaggcct gatgtctgtt taacaaaaga tgtgtgtatt
2001 gtccgaggag ggatgacaac tgatcggctt cagaggtggt tgtatgccca
2051 acgtgatggg ggtctcagct tagcagggga ctgtcccgtt ctagggcagt
2101 tttacaactc ctttccacgt ggcgagtccc taggggagtt gtcagaatac
2151 gccgaagcac acaaatttaa ggccggaaag caatatggcg aaattactcc
2201 attgtcgagg tactcttttt ggctggcatt tgggttaacc cctgatgacc
2251 agctagctat cgaggaggac cttaaacatt ggacacctga ggtgaagttg
2301 ggaagcgagg cccctcgcac aactttgctg gactattgct caagataact
2351 gaccattatc aagtgagaga agtatggaaa tagcgcgaac taataagaac
2401 agtgttgtga agtatgtacc tgcagcagta ggtgctgctt atcagatggg
2451 taagtccata gtaccttatg caccaacgat tgttgatgca ttaggtaacg
2501 tggtatctcg agcaacaggg cgtaaaaaga aaagtaaagg aaaggaagtt
2551 cagaatcaaa ttgtaggtgg tataggagca attgcagctc ccgttagcat
2601 taccaagcgt gtgcgaggaa tgaggccttc atttaggcag actaaaggga
2651 aagtccatat tgtacatcgt gagctcgtta ccagtgtcat taacctggtg
2701 ggcaactttc gggttaacaa taacgtgagt gcacaaatag ggcaattccg
2751 tattaatccc tctaattcct ccctgtttac ttggttacca accatagcat
2801 caaatttcga ctcatataga ttcacatcaa tcaggtttgt ttatgtgcca
2851 ctatgtgcta ctactgaaac tggtagggtg tcattattct gggataaaga
2901 ttcacaggat ccccttccag ttgacagagc cgctctaagt tcctacggac
2951 attcaaacga aggtcctcca tgggcagaga ctacactcaa tgtgccaact
3001 gatggcaagc aacgttttgt caccgactcg aatacgactg atcgtaagtt
3051 ggttgacctg ggacagtttg cttttgccac ttatgcagga ggtagcaata
3101 accaaattgg agacatatat gttgaatatg gggtagagtt ctctgaggcg
3151 caaccagccg gtggattaac gcaatatatt acaaagtctg tcggggctac
3201 tgcctccacc actggaccta gttatgtcgt agatgctaat attaatgtta
3251 acgccacaac agcaaatgta gaattctttt ctcccggaac cttccttata
3301 accgccgttg tttacggatc cacaatagct tcaccttcca tggcaggtgg
3351 gaatggtacc ttaattggtg atcttccagt tgtgggaggg tcgaatgctt
3401 ccatttggac ttgtgtgttt agcaccacag gggtctctac tagtgtccca
3451 acgtttacac aggcgggcac aggcctaact cgggtgcaat acacgattac
3501 ccgtgtaaat tcacaaactg cgtatcaggt ttaagggcga aagtaggttg
3551 gtgtcggaga cttggcaatg tccgagttta gaccttgtgt ggctcaagaa
3601 gtcttaccag cttcatggaa attcaacata tagatggaac ttttgaggac
3651 tcattgattg ttcaaaacga ggttaaaaag tttctaatat ctcataagac
3701 aaccaaagcc atactaccat tagctcccta ctctcaactc actaaatgga
3751 aaatacccaa ggcggggttc tatgccccaa tagatgtaaa gtttgttctc
3801 acaccacatg tatcagagag agctcaggtc aggggggtcg tcaagctagt
3851 cgattcacga gacttatcac cgagccgaga attgtatcgg agcaaggaat
3901 tcaatatcgg acatggattg ctgatagagg gttcccaatt gcccttttgt
3951 cttccagtgg gggactatcc acttcaattc gaggtcacgg tgttgcagtc
4001 acagttcaag gagacagcaa atctctactc aacttctgtc gagtggcgta
4051 tgatgtcttc aaccaccccg ttatccagag tgaagtctgt tatgggcgcg
4101 gcccatcaac cagcgatgaa gttagagccg aatttcaaga tgaagctgga
4151 atcatccaag ggcgtctccc acaatcagaa acagaggaaa acaacaaagc
4201 ctaatggcct agatcggagg ggtcgtggta atagcaccgt tggtggttct
4251 tcggatgctt ctcagtccca aggcgcacaa gcatgggggg gttaccataa
4301 cgatctagga gacagcttat ccgagtactc tgtgtctgac ttgtagagag
4351 accaccaatg cacaccagaa atgggggcta taagtgtatt ggttcttaat
4401 tttcatccct tgcgtggaaa cacgctagcc c