Sequence of DPV Tomato leaf curl Philippines virus

Tomato leaf curl Philippines virus isolate P108, complete genome.

ACC No: EU487038

Dated: 2011-05-01 | Length: 2755 | CRC: 120731411

                
ID   EU487038; SV 1; circular; genomic DNA; STD; VRL; 2755 BP.
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AC   EU487038;
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DT   11-MAR-2008 (Rel. 95, Created)
DT   01-MAY-2011 (Rel. 108, Last updated, Version 2)
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DE   Tomato leaf curl Philippines virus isolate P108, complete genome.
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KW   .
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OS   Tomato leaf curl Philippines virus
OC   Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN   [1]
RP   1-2755
RA   Tsai W.S., Shih S.L., Venkatesan S.G., Aquino M.U., Green S.K., Kenyon L.,
RA   Jan F.J.;
RT   "Distribution and genetic diversity of begomoviruses infecting tomato and
RT   pepper plants in the Philippines";
RL   Ann. Appl. Biol. 158(3):275-287(2011).
XX
RN   [2]
RP   1-2755
RA   Tsai W.S., Shih S.L., Venkatesan S.G., Aquino M., Huang Y.C., Green S.K.,
RA   Jan F.-J.;
RT   "Molecular identification of Solanaceae- and Cucurbitaceae-infecting
RT   Begomoviruses in the Philippines";
RL   Unpublished.
XX
RN   [3]
RP   1-2755
RA   Tsai W.S., Shih S.L., Venkatesan S.G., Aquino M., Huang Y.C., Green S.K.,
RA   Jan F.-J.;
RT   ;
RL   Submitted (13-FEB-2008) to the EMBL/GenBank/DDBJ databases.
RL   Virology Unit, AVRDC-the World Vegetable Center, P.O. Box 42, Shanhua,
RL   Taina, Taiwan 74199, Republic of China
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FH   Key             Location/Qualifiers
FH
FT   source          1. .2755
FT                   /organism="Tomato leaf curl Philippines virus"
FT                   /segment="DNA-A"
FT                   /host="pepper"
FT                   /isolate="P108"
FT                   /mol_type="genomic DNA"
FT                   /country="Philippines:Laguna"
FT                   /isolation_source="plant with mosaic, leaf curling and
FT                   blistering symptoms"
FT                   /db_xref="taxon:96054"
FT   misc_feature    join(2614. .2755,1. .142)
FT                   /note="intergenic region"
FT   gene            143. .487
FT                   /gene="V2"
FT   CDS             143. .487
FT                   /codon_start=1
FT                   /gene="V2"
FT                   /product="pre-coat protein"
FT                   /db_xref="GOA:B1PRB4"
FT                   /db_xref="InterPro:IPR002511"
FT                   /db_xref="InterPro:IPR005159"
FT                   /db_xref="UniProtKB/TrEMBL:B1PRB4"
FT                   /protein_id="ACA61064.1"
FT                   /translation="MWDPLVHPFPESLHGFRCMLAIKYLQSLQNKYSPDTVGHEFLKDF
FT                   ICILRSKNYAEAFNRYSNVVANVYNTSEAQLRESVQSPCLCPHCPRHVLQAKVMDLQAH
FT                   VSQAQDIQNV"
FT   gene            303. .1079
FT                   /gene="V1"
FT   CDS             303. .1079
FT                   /codon_start=1
FT                   /gene="V1"
FT                   /product="coat protein"
FT                   /db_xref="GOA:B1PRD3"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR000650"
FT                   /db_xref="UniProtKB/TrEMBL:B1PRD3"
FT                   /protein_id="ACA61065.1"
FT                   /translation="MPKRSIDTVTSLPMSITRRRLNYGSQYSLPASVPTVPDMSYKRRS
FT                   WTYRPMFRKPKIYRMYRSRDVPRGCEGPCKVQSYEQRHDIAHVGKVICVSDVTRGNGLT
FT                   HRVGKRFCVKSVYVLGKVWMDENIKTKNHTNTVMFFLVRDRRPYGTPQDFGQVFNMYVN
FT                   EPSTATVKNDNRDRYQVLRKFQATVTGGQYASKEQAIVKRFMKINNHVTYNHQEAAKYD
FT                   NHTENALLLYMACTHASNPVYATLKIRIYFYDSVQN"
FT   gene            complement(1076. .1477)
FT                   /gene="C3"
FT   CDS             complement(1076. .1477)
FT                   /codon_start=1
FT                   /gene="C3"
FT                   /product="C3 protein"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProtKB/TrEMBL:B1PRD4"
FT                   /protein_id="ACA61068.1"
FT                   /translation="MDSRTGEPITAAQAENGVYTWTITNPLYFKISQHDKMPFLKNHDI
FT                   ITVQIQFNHNLRKALGIHQCFLICKIWTRLHPQTWHFLRVFKYQCMKYLYSLGVISINN
FT                   VIRAVDHVMYNIIQTIDVQFSHIIKFNIY"
FT   gene            complement(1218. .1625)
FT                   /gene="C2"
FT   CDS             complement(1218. .1625)
FT                   /codon_start=1
FT                   /gene="C2"
FT                   /product="C2 protein"
FT                   /db_xref="GOA:Q8B6R2"
FT                   /db_xref="InterPro:IPR000942"
FT                   /db_xref="UniProtKB/TrEMBL:Q8B6R2"
FT                   /protein_id="ACA61066.1"
FT                   /translation="MQNSSPSRGHSTQVPIKVQHKIAKRRPIRRRRIDLPCGCSYYLGL
FT                   NCASYGFSHRGTHHCSSGREWRIYLDDNKSPLFQDIPTRQDAVLEKPRYHNSTNTVQPQ
FT                   PEESVGNTSMFSDLQNLDSFTSSDLAFLKSI"
FT   gene            complement(1525. .2613)
FT                   /gene="C1"
FT   CDS             complement(1525. .2613)
FT                   /codon_start=1
FT                   /gene="C1"
FT                   /product="replication-associated protein"
FT                   /db_xref="GOA:B1PRD6"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:B1PRD6"
FT                   /protein_id="ACA61067.1"
FT                   /translation="MAPPRKFQINAKNYFLTYPKCCLTKEETLGQIKTLDTVTNKKFIK
FT                   ICRELHEDGSPHLHVLIQFEGKYRCTNKRFFDLVSPTRSAHYHPNIQGAKSSSDVKSYI
FT                   DKDGDTLEWGEFQIDGRSARGGQQSANDAYAKAINTGSKSEALNVIRELAPKDFVLQFH
FT                   NLNANLDRIFAPPLEVFRCPFLSSSFDQVPKELEDWVSENVRDAAARPWRPISIVIEGD
FT                   SRTGKTMWARSMGPHNYLCGHLDLSPKVYSNDAWYNVIDDVXPHYLKHFKEFMGAQRDW
FT                   QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEDKNSPLKDWALKNAEFITLTRPL
FT                   YSGTHQSPAQNSQEETNTQAEN"
FT   gene            complement(2166. .2456)
FT                   /gene="C4"
FT   CDS             complement(2166. .2456)
FT                   /codon_start=1
FT                   /gene="C4"
FT                   /product="C4 protein"
FT                   /db_xref="InterPro:IPR002488"
FT                   /db_xref="UniProtKB/TrEMBL:B1PRD7"
FT                   /protein_id="ACA61069.1"
FT                   /translation="MGALISMCSSSSKGNTDARIRDSSIWYPQPGQHITIQTYRELNQA
FT                   PTSNHILIRTETLSNGVSFRSMEDLLEGVNNQPMMLTPKQLTQEVSRRLLM"
XX
SQ   Sequence 2755 BP; 738 A; 552 C; 591 G; 873 T; 1 other;

eu487038 Length: 2755  01-MAY-2011  Type: N  Check: 4710  ..

       1  accgtgggcc gcgcaaattt tttttatatt tgggcctaat gggcctgttg
      51  gaagtcggcc gcgaccaatg gaaacgctcc ctcatcgctt aacaaccatg
     101  ttgtcctcta tttatttctg ctacctcaat tttgtactaa gaatgtggga
     151  tcctctggta catccatttc ctgaaagctt acacggcttc agatgtatgc
     201  ttgccatcaa atatcttcag agcttacaga ataaatattc tccggacact
     251  gttggtcacg agtttttgaa agattttatc tgcattttgc gaagtaagaa
     301  ttatgccgaa gcgttcaata gatacagtaa cgtcgttgcc aatgtctata
     351  acacgtcgga ggctcaatta cgggagtcag tacagtctcc ctgcctctgt
     401  ccccactgtc ccagacatgt cttacaagcg aaggtcatgg acttacaggc
     451  ccatgtttcg caagcccaag atatacagaa tgtatagaag ccgtgatgtt
     501  cctcgtgggt gtgaaggccc atgtaaggtt cagtcttatg aacagcgtca
     551  tgatatagcc catgtgggta aggtcatatg tgtttctgat gtcactcgtg
     601  gtaatgggct cacacatcgt gtcggaaaga ggttttgtgt aaagtctgtg
     651  tatgtgttgg ggaaggtctg gatggatgag aacatcaaga ctaagaatca
     701  cacaaacact gtcatgtttt ttttagttcg tgataggaga ccctatggga
     751  ctccccagga tttcggtcag gtttttaaca tgtatgttaa tgagcctagt
     801  actgcaacag taaaaaatga taatagagat cgataccaag ttcttcgtaa
     851  atttcaagct acagtgactg gaggtcagta tgcaagcaag gagcaagcaa
     901  tagtcaagag gttcatgaag attaacaacc atgttactta caatcatcaa
     951  gaggctgcga agtacgataa ccatacagag aacgctttac tgttgtatat
    1001  ggcatgtact catgccagta atccagtgta tgctactttg aaaatcagaa
    1051  tctatttcta tgattctgtt caaaattaat aaatattgaa ttttattata
    1101  tgagaaaatt gtacatctat tgtttgaatt atattgtaca tcacatgatc
    1151  gactgctcta attacattgt ttatgctgat aacccctaaa ctatacaaat
    1201  acttcataca ctgatattta aatactctta agaaatgcca agtctgagga
    1251  tgtaaacgag tccagatttt gcagatcaga aaacattgat gtattcccaa
    1301  cgctttcctc aggttgtggt tgaactgtat ttgtactgtt atgatatcgt
    1351  ggtttttcaa gaacggcatc ttgtcgtgtt gggatatctt gaaataaagg
    1401  ggatttgtta tcgtccaggt atatacgcca ttctctgcct gagctgcagt
    1451  gatgggttcc cctgtgcgag aatccatatg aagcgcaatt aagtcctaga
    1501  tagtaagagc agccgcaagg aaggtcaatt ctccgcctgc gtattggtct
    1551  cctcttggct attttgtgct ggactttgat gggtacctga gtagagtggc
    1601  ctcgtgaggg tgatgaattc tgcattcttt agtgcccagt ctttgagtgg
    1651  agaattttta tcctcatcca agtactcttt atacgacgat gtaggtcctg
    1701  gattgcatag gaagattgtt gggatcccac ctttaatttg aattggtttc
    1751  ccgtactttg tgttgctttg ccagtccctt tgggccccca taaactcttt
    1801  aaaatgcttt agatagtggg ggtsgacgtc atcaatgacg ttgtaccaag
    1851  catcattact gtacaccttt ggactaaggt ccagatgtcc acacaaataa
    1901  ttatgtggac ccatagacct agcccacatc gtcttccccg tcctgctatc
    1951  tccttctata acaatactta tgggtctcca tggccgcgca gcggcatccc
    2001  gaacattctc ggaaacccag tcttcaagtt cttttggaac ttggtcgaaa
    2051  gaagaagaaa gaaaaggaca acgaaaaacc tctaaaggag gtgcaaagat
    2101  cctatctaaa ttggcattta aattatgaaa ttgtaaaaca aaatcttttg
    2151  gagctaactc cctaattaca ttaagagcct ccgacttact tcctgtgtta
    2201  attgctttgg cgtaagcatc attggctgat tgttgacccc ctctagcaga
    2251  tcttccatcg atctgaaact caccccattc gagagtgtct ccgtccttat
    2301  caatatatga tttgacgtcg gagcttgatt tagctccctg tatgtttgga
    2351  tggtaatgtg ctgacctggt tggggatacc agatcgaaga atctcttatt
    2401  cgtgcatctg tatttccctt cgaactggat gagcacatgg agatgagggc
    2451  tcccatcttc gtgcagttct ctgcagattt tgatgaattt tttgtttgtt
    2501  acagtatcta atgtttttat ctggccaagg gtttcctctt ttgtaagaca
    2551  gcatttggga tatgtaagaa aataattttt ggcatttatt tggaattttc
    2601  tgggtggtgc catttgactc agtcaatggg taccaattga gaggatttca
    2651  ttctactcag ggtatcggta cattggtacc catatatact tggttaccta
    2701  atggcataat tgtaattttt ttatgggctt ccaagcggcc cacgactata
    2751  atatt