Sequence of DPV Tomato leaf curl Philippines virus
Tomato leaf curl Philippines virus isolate P108, complete genome.
ACC No: EU487038
Dated: 2011-05-01 | Length: 2755 | CRC: 120731411
ID EU487038; SV 1; circular; genomic DNA; STD; VRL; 2755 BP. XX AC EU487038; XX DT 11-MAR-2008 (Rel. 95, Created) DT 01-MAY-2011 (Rel. 108, Last updated, Version 2) XX DE Tomato leaf curl Philippines virus isolate P108, complete genome. XX KW . XX OS Tomato leaf curl Philippines virus OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2755 RA Tsai W.S., Shih S.L., Venkatesan S.G., Aquino M.U., Green S.K., Kenyon L., RA Jan F.J.; RT "Distribution and genetic diversity of begomoviruses infecting tomato and RT pepper plants in the Philippines"; RL Ann. Appl. Biol. 158(3):275-287(2011). XX RN [2] RP 1-2755 RA Tsai W.S., Shih S.L., Venkatesan S.G., Aquino M., Huang Y.C., Green S.K., RA Jan F.-J.; RT "Molecular identification of Solanaceae- and Cucurbitaceae-infecting RT Begomoviruses in the Philippines"; RL Unpublished. XX RN [3] RP 1-2755 RA Tsai W.S., Shih S.L., Venkatesan S.G., Aquino M., Huang Y.C., Green S.K., RA Jan F.-J.; RT ; RL Submitted (13-FEB-2008) to the EMBL/GenBank/DDBJ databases. RL Virology Unit, AVRDC-the World Vegetable Center, P.O. Box 42, Shanhua, RL Taina, Taiwan 74199, Republic of China XX FH Key Location/Qualifiers FH FT source 1. .2755 FT /organism="Tomato leaf curl Philippines virus" FT /segment="DNA-A" FT /host="pepper" FT /isolate="P108" FT /mol_type="genomic DNA" FT /country="Philippines:Laguna" FT /isolation_source="plant with mosaic, leaf curling and FT blistering symptoms" FT /db_xref="taxon:96054" FT misc_feature join(2614. .2755,1. .142) FT /note="intergenic region" FT gene 143. .487 FT /gene="V2" FT CDS 143. .487 FT /codon_start=1 FT /gene="V2" FT /product="pre-coat protein" FT /db_xref="GOA:B1PRB4" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:B1PRB4" FT /protein_id="ACA61064.1" FT /translation="MWDPLVHPFPESLHGFRCMLAIKYLQSLQNKYSPDTVGHEFLKDF FT ICILRSKNYAEAFNRYSNVVANVYNTSEAQLRESVQSPCLCPHCPRHVLQAKVMDLQAH FT VSQAQDIQNV" FT gene 303. .1079 FT /gene="V1" FT CDS 303. .1079 FT /codon_start=1 FT /gene="V1" FT /product="coat protein" FT /db_xref="GOA:B1PRD3" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:B1PRD3" FT /protein_id="ACA61065.1" FT /translation="MPKRSIDTVTSLPMSITRRRLNYGSQYSLPASVPTVPDMSYKRRS FT WTYRPMFRKPKIYRMYRSRDVPRGCEGPCKVQSYEQRHDIAHVGKVICVSDVTRGNGLT FT HRVGKRFCVKSVYVLGKVWMDENIKTKNHTNTVMFFLVRDRRPYGTPQDFGQVFNMYVN FT EPSTATVKNDNRDRYQVLRKFQATVTGGQYASKEQAIVKRFMKINNHVTYNHQEAAKYD FT NHTENALLLYMACTHASNPVYATLKIRIYFYDSVQN" FT gene complement(1076. .1477) FT /gene="C3" FT CDS complement(1076. .1477) FT /codon_start=1 FT /gene="C3" FT /product="C3 protein" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:B1PRD4" FT /protein_id="ACA61068.1" FT /translation="MDSRTGEPITAAQAENGVYTWTITNPLYFKISQHDKMPFLKNHDI FT ITVQIQFNHNLRKALGIHQCFLICKIWTRLHPQTWHFLRVFKYQCMKYLYSLGVISINN FT VIRAVDHVMYNIIQTIDVQFSHIIKFNIY" FT gene complement(1218. .1625) FT /gene="C2" FT CDS complement(1218. .1625) FT /codon_start=1 FT /gene="C2" FT /product="C2 protein" FT /db_xref="GOA:Q8B6R2" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q8B6R2" FT /protein_id="ACA61066.1" FT /translation="MQNSSPSRGHSTQVPIKVQHKIAKRRPIRRRRIDLPCGCSYYLGL FT NCASYGFSHRGTHHCSSGREWRIYLDDNKSPLFQDIPTRQDAVLEKPRYHNSTNTVQPQ FT PEESVGNTSMFSDLQNLDSFTSSDLAFLKSI" FT gene complement(1525. .2613) FT /gene="C1" FT CDS complement(1525. .2613) FT /codon_start=1 FT /gene="C1" FT /product="replication-associated protein" FT /db_xref="GOA:B1PRD6" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:B1PRD6" FT /protein_id="ACA61067.1" FT /translation="MAPPRKFQINAKNYFLTYPKCCLTKEETLGQIKTLDTVTNKKFIK FT ICRELHEDGSPHLHVLIQFEGKYRCTNKRFFDLVSPTRSAHYHPNIQGAKSSSDVKSYI FT DKDGDTLEWGEFQIDGRSARGGQQSANDAYAKAINTGSKSEALNVIRELAPKDFVLQFH FT NLNANLDRIFAPPLEVFRCPFLSSSFDQVPKELEDWVSENVRDAAARPWRPISIVIEGD FT SRTGKTMWARSMGPHNYLCGHLDLSPKVYSNDAWYNVIDDVXPHYLKHFKEFMGAQRDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEDKNSPLKDWALKNAEFITLTRPL FT YSGTHQSPAQNSQEETNTQAEN" FT gene complement(2166. .2456) FT /gene="C4" FT CDS complement(2166. .2456) FT /codon_start=1 FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:B1PRD7" FT /protein_id="ACA61069.1" FT /translation="MGALISMCSSSSKGNTDARIRDSSIWYPQPGQHITIQTYRELNQA FT PTSNHILIRTETLSNGVSFRSMEDLLEGVNNQPMMLTPKQLTQEVSRRLLM" XX SQ Sequence 2755 BP; 738 A; 552 C; 591 G; 873 T; 1 other; eu487038 Length: 2755 01-MAY-2011 Type: N Check: 4710 .. 1 accgtgggcc gcgcaaattt tttttatatt tgggcctaat gggcctgttg 51 gaagtcggcc gcgaccaatg gaaacgctcc ctcatcgctt aacaaccatg 101 ttgtcctcta tttatttctg ctacctcaat tttgtactaa gaatgtggga 151 tcctctggta catccatttc ctgaaagctt acacggcttc agatgtatgc 201 ttgccatcaa atatcttcag agcttacaga ataaatattc tccggacact 251 gttggtcacg agtttttgaa agattttatc tgcattttgc gaagtaagaa 301 ttatgccgaa gcgttcaata gatacagtaa cgtcgttgcc aatgtctata 351 acacgtcgga ggctcaatta cgggagtcag tacagtctcc ctgcctctgt 401 ccccactgtc ccagacatgt cttacaagcg aaggtcatgg acttacaggc 451 ccatgtttcg caagcccaag atatacagaa tgtatagaag ccgtgatgtt 501 cctcgtgggt gtgaaggccc atgtaaggtt cagtcttatg aacagcgtca 551 tgatatagcc catgtgggta aggtcatatg tgtttctgat gtcactcgtg 601 gtaatgggct cacacatcgt gtcggaaaga ggttttgtgt aaagtctgtg 651 tatgtgttgg ggaaggtctg gatggatgag aacatcaaga ctaagaatca 701 cacaaacact gtcatgtttt ttttagttcg tgataggaga ccctatggga 751 ctccccagga tttcggtcag gtttttaaca tgtatgttaa tgagcctagt 801 actgcaacag taaaaaatga taatagagat cgataccaag ttcttcgtaa 851 atttcaagct acagtgactg gaggtcagta tgcaagcaag gagcaagcaa 901 tagtcaagag gttcatgaag attaacaacc atgttactta caatcatcaa 951 gaggctgcga agtacgataa ccatacagag aacgctttac tgttgtatat 1001 ggcatgtact catgccagta atccagtgta tgctactttg aaaatcagaa 1051 tctatttcta tgattctgtt caaaattaat aaatattgaa ttttattata 1101 tgagaaaatt gtacatctat tgtttgaatt atattgtaca tcacatgatc 1151 gactgctcta attacattgt ttatgctgat aacccctaaa ctatacaaat 1201 acttcataca ctgatattta aatactctta agaaatgcca agtctgagga 1251 tgtaaacgag tccagatttt gcagatcaga aaacattgat gtattcccaa 1301 cgctttcctc aggttgtggt tgaactgtat ttgtactgtt atgatatcgt 1351 ggtttttcaa gaacggcatc ttgtcgtgtt gggatatctt gaaataaagg 1401 ggatttgtta tcgtccaggt atatacgcca ttctctgcct gagctgcagt 1451 gatgggttcc cctgtgcgag aatccatatg aagcgcaatt aagtcctaga 1501 tagtaagagc agccgcaagg aaggtcaatt ctccgcctgc gtattggtct 1551 cctcttggct attttgtgct ggactttgat gggtacctga gtagagtggc 1601 ctcgtgaggg tgatgaattc tgcattcttt agtgcccagt ctttgagtgg 1651 agaattttta tcctcatcca agtactcttt atacgacgat gtaggtcctg 1701 gattgcatag gaagattgtt gggatcccac ctttaatttg aattggtttc 1751 ccgtactttg tgttgctttg ccagtccctt tgggccccca taaactcttt 1801 aaaatgcttt agatagtggg ggtsgacgtc atcaatgacg ttgtaccaag 1851 catcattact gtacaccttt ggactaaggt ccagatgtcc acacaaataa 1901 ttatgtggac ccatagacct agcccacatc gtcttccccg tcctgctatc 1951 tccttctata acaatactta tgggtctcca tggccgcgca gcggcatccc 2001 gaacattctc ggaaacccag tcttcaagtt cttttggaac ttggtcgaaa 2051 gaagaagaaa gaaaaggaca acgaaaaacc tctaaaggag gtgcaaagat 2101 cctatctaaa ttggcattta aattatgaaa ttgtaaaaca aaatcttttg 2151 gagctaactc cctaattaca ttaagagcct ccgacttact tcctgtgtta 2201 attgctttgg cgtaagcatc attggctgat tgttgacccc ctctagcaga 2251 tcttccatcg atctgaaact caccccattc gagagtgtct ccgtccttat 2301 caatatatga tttgacgtcg gagcttgatt tagctccctg tatgtttgga 2351 tggtaatgtg ctgacctggt tggggatacc agatcgaaga atctcttatt 2401 cgtgcatctg tatttccctt cgaactggat gagcacatgg agatgagggc 2451 tcccatcttc gtgcagttct ctgcagattt tgatgaattt tttgtttgtt 2501 acagtatcta atgtttttat ctggccaagg gtttcctctt ttgtaagaca 2551 gcatttggga tatgtaagaa aataattttt ggcatttatt tggaattttc 2601 tgggtggtgc catttgactc agtcaatggg taccaattga gaggatttca 2651 ttctactcag ggtatcggta cattggtacc catatatact tggttaccta 2701 atggcataat tgtaattttt ttatgggctt ccaagcggcc cacgactata 2751 atatt