Sequence of DPV Beet black scorch virus
Beet black scorch virus isolate Val25 polymerase, 23K protein, 7K transport protein 7A, 7K transport protein 7B, 5K transport protein 5A, coat protein, and 5K hypothetical protein 5B genes, complete cds.
ACC No: EU545828
Dated: 2008-06-27 | Length: 3578 | CRC: -1288199004
ID EU545828; SV 1; linear; genomic RNA; STD; VRL; 3578 BP.
XX
AC EU545828;
XX
DT 27-JUN-2008 (Rel. 96, Created)
DT 27-JUN-2008 (Rel. 96, Last updated, Version 1)
XX
DE Beet black scorch virus isolate Val25 polymerase, 23K protein, 7K transport
DE protein 7A, 7K transport protein 7B, 5K transport protein 5A, coat protein,
DE and 5K hypothetical protein 5B genes, complete cds.
XX
KW .
XX
OS Beet black scorch virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae;
OC Necrovirus.
XX
RN [1]
RP 1-3578
RX PUBMED; 18548319.
RA Koenig R., Valizadeh J.;
RT "Molecular and serological characterization of an Iranian isolate of Beet
RT black scorch virus";
RL Arch. Virol. 153(7):1397-1400(2008).
XX
RN [2]
RP 1-3578
RA Koenig R., Valizadeh J.;
RT ;
RL Submitted (05-MAR-2008) to the EMBL/GenBank/DDBJ databases.
RL Institut fuer Epidemiologie und Pathogendiagnostik, Julius Kuhn Institute,
RL Messeweg 11, Braunschweig D38104, Germany
XX
FH Key Location/Qualifiers
FH
FT source 1. .3578
FT /organism="Beet black scorch virus"
FT /isolate="Val25"
FT /mol_type="genomic RNA"
FT /country="Iran"
FT /db_xref="taxon:196375"
FT CDS 10. .2184
FT /codon_start=1
FT /transl_except=(pos:619. .621,aa:OTHER)
FT /product="polymerase"
FT /protein_id="ACD67874.1"
FT /translation="MDSIPYVILRILDFVFHSIFFPSLLFIIKHNTTILWACLCAYGFY
FT RAFRLVFKIKVEVHPATRAVFKDMVTRFQRESMFSPDDEVPEGIPIHEDVDLVSDPTHK
FT DIKRVRASRRVSYAVRVAHVAKSKVGLLANTKANELVYSRLCRDEMVTHGVRPSHIAHA
FT VPLAVAACFIPLDSDFLAASIRNCQEMEERRAVLGPSYGKXGGLLCTSGFTTPTWRGNP
FT EGLLVKRGPPLAKPRKLYRFSGFGTHIRYGVHDHSLGNVRRGLVERLFMVETKDGLAPT
FT PKPTPGVYAKLSRFHDLVSANLTSTTRLTYEQFLGFYSGRKLERYQQAVESLAIRPIGV
FT QDAWLSTFVKAEKLNISAKPDPAPRVIQPRSPRYNVEVGRFLRHAEEHLFDAINRVYGG
FT RTVFKGLNADQAGMEMQAMWQEFDNPVGIGMDASRFDQHVSKEALEFEHKIWLSMYHGS
FT DRKTLAKLLGMQIHNRGLARCPDGEIRYTVEGCRMSGDINTSSGNCYIMCATVHNYCSR
FT LGVKRFRLANNGDDCMLVVEAKDEARVRQGLIEYYRELGFTMKVEPTVYELEHLEFCQT
FT RPVLVDGAYRMVRNLHQGMSKDLHSLHDLGSRKAAEAWVSAVGSGGRVMNDGVPVLKSF
FT FMQFPLSAAPKSKSDMSIALQEDWKYKFNRTGCFRNLAPTPQSRYSFWRAFGVLPDEQI
FT VLENGFSRLSFDKLDQDIQEEVSLLQFSGA"
FT CDS 10. .621
FT /codon_start=1
FT /product="23K protein"
FT /protein_id="ACD67875.1"
FT /translation="MDSIPYVILRILDFVFHSIFFPSLLFIIKHNTTILWACLCAYGFY
FT RAFRLVFKIKVEVHPATRAVFKDMVTRFQRESMFSPDDEVPEGIPIHEDVDLVSDPTHK
FT DIKRVRASRRVSYAVRVAHVAKSKVGLLANTKANELVYSRLCRDEMVTHGVRPSHIAHA
FT VPLAVAACFIPLDSDFLAASIRNCQEMEERRAVLGPSYGK"
FT CDS 2202. .2393
FT /codon_start=1
FT /product="7K transport protein 7A"
FT /protein_id="ACD67876.1"
FT /translation="MEQQRSEQRRERRVRSRSEGRKSMSDVGQSAINREADVKKDMGPS
FT VSMTVVGENVEFTQHFHF"
FT CDS 2395. .2592
FT /codon_start=1
FT /product="7K transport protein 7B"
FT /protein_id="ACD67877.1"
FT /translation="MGTIYVVREEPSGFLVWAFVVAIVCIIGLLSYTPPERLNHSYHEN
FT NQKTQYITIGGASTSKVSTN"
FT CDS 2408. .2551
FT /codon_start=1
FT /product="5K transport protein 5A"
FT /protein_id="ACD67878.1"
FT /translation="MLFAKNPQGSSCGHSLLQLCVSLDSYRTPHLKDLTTLITKITRRR
FT NT"
FT CDS 2621. .3319
FT /codon_start=1
FT /product="coat protein"
FT /protein_id="ACD67879.1"
FT /translation="MAPKRNKGGRKTRVSDETVRAPAAGGVIQRTPGIPPRIRSTTIGT
FT RVSNTELLAGVNVAAAGAFSVVGAGLFPSNLGWLNGIASNYSKFRWLSIKLIYIPIVPT
FT TTAGAMTMALSYDPADATPTSFQQVQQMYNSITAPVWAGFDGATVQLLGDRPTTGAVCI
FT DVDVNRFGFTWYRYATLAAITALTANDRNLYIPSVCNVATSGGSAATNVGNLMIKYSIE
FT LIEPIPAAIN"
FT CDS 3384. .3521
FT /codon_start=1
FT /product="5K hypothetical protein 5B"
FT /protein_id="ACD67880.1"
FT /translation="MEDCLHDAGMLSHTVRYRCWILANRLDRFGWFQTDVSLEIFIVLS
FT "
XX
SQ Sequence 3578 BP; 896 A; 846 C; 922 G; 914 T; 0 other;
eu545828 Length: 3578 27-JUN-2008 Type: N Check: 1002 ..
1 tcagcgatca tggattctat cccgtatgtg atcctgcgca tacttgattt
51 tgtctttcac tccatcttct ttccatccct tctctttatc atcaaacaca
101 acaccaccat cctatgggct tgtctctgtg cctatgggtt ctaccgtgct
151 ttccgccttg ttttcaagat caaggttgag gtacacccag ccacccgtgc
201 tgtctttaag gacatggtca cccgtttcca gcgggagagt atgttctcac
251 ccgacgatga agtgcctgag ggcatcccta tccacgagga cgtagacctt
301 gttagcgacc ccacacacaa agatattaag agggtccgag ctagcaggcg
351 agtctcatac gctgtgaggg ttgctcatgt agccaagtca aaggtgggac
401 tacttgcaaa caccaaagca aatgagctgg tgtattctcg gctgtgtcga
451 gatgagatgg tcacccacgg tgtgcgccca tcacacattg cgcatgcagt
501 gccgctcgct gtcgcggcct gttttatccc attggacagt gatttcttgg
551 cagcatcaat tagaaactgc caggagatgg aagagcggag ggccgttttg
601 gggccctcat atggaaaata gggaggccta ctctgcacca gcgggtttac
651 cacaccaact tggcgtggta atccagaggg tttgctggtg aagagaggac
701 cacctctggc caaacccaga aaactgtacc gtttttctgg atttgggact
751 catatacggt acggagtaca cgatcactcc ttgggcaatg ttcggagggg
801 acttgtcgag cggctattta tggtagagac caaagatggc cttgctccga
851 caccaaagcc cacccctggc gtgtatgcca agttatcccg gttccatgac
901 cttgttagtg ccaatctaac ctcgaccacc agattaacat acgagcaatt
951 cctcggcttt tattctggtc gcaaattgga gaggtaccaa caggctgtgg
1001 agtcgttagc aatccgccct ataggggtcc aggatgcttg gcttagcacg
1051 ttcgttaagg ctgaaaaact caacatctca gctaaacccg acccggcacc
1101 tagggtcatt cagcctaggt cgccgcggta caatgtggag gttggacggt
1151 tcctcagaca tgctgaggaa catctgttcg atgccattaa tcgtgtgtat
1201 ggtggacgga cagtattcaa ggggttgaat gctgatcagg ctggcatgga
1251 gatgcaagcc atgtggcaag aatttgacaa tcctgtcggt attggcatgg
1301 acgcctctcg gtttgatcaa cacgtttcca aggaggcgtt ggagttcgaa
1351 cacaagatat ggttgtccat gtaccatggc tctgacagga aaacattggc
1401 aaagctgttg gggatgcaaa tccacaatcg cggtcttgct agatgtcctg
1451 atggggaaat caggtacacg gttgaagggt gtcgtatgtc tggagatatt
1501 aacacctctt ccggcaactg ctatataatg tgcgcaactg tgcacaatta
1551 ttgcagccgg ttgggtgtta agaggttcag gcttgccaac aatggtgatg
1601 attgcatgct agtcgtggaa gctaaggatg aagcgcgtgt gaggcaaggg
1651 cttattgaat actataggga gttgggattc acaatgaaag tggaacccac
1701 tgtctatgaa cttgagcatc ttgagttttg tcaaacccgc ccagtcctgg
1751 ttgatggggc ttacagaatg gtgcgcaatc tacaccaggg catgtcgaag
1801 gacctacact ctttgcatga tcttggaagt aggaaagctg ccgaggcatg
1851 ggtctcagca gttggcagtg ggggacgagt gatgaatgac ggggtgcctg
1901 tactcaagtc gttcttcatg cagtttcccc tttctgctgc tcctaaatcc
1951 aagtctgata tgagtatagc gttgcaggaa gattggaaat acaaattcaa
2001 tcggactggg tgtttcagaa atttagcacc cactccacaa tcccgctact
2051 cattttggcg tgcatttgga gtgttgccag atgaacagat tgtcctggaa
2101 aacggatttt ctcgtctgag ttttgacaaa ctagaccagg atatccagga
2151 ggaggtcagc ctcctccagt tttctggggc atgaaaacct aaccactttt
2201 catggaacaa cagcgtagtg aacagcgtcg tgagcgtagg gtgagaagta
2251 gatcggaggg caggaagtct atgtctgatg tgggacagtc tgcaatcaat
2301 agggaagcag acgtcaagaa agacatgggt ccatcggtct ctatgacggt
2351 ggtgggggag aacgtggagt tcacacaaca tttccacttc tgaaatgggc
2401 acaatctatg ttgttcgcga agaaccctca gggttcctcg tgtgggcatt
2451 cgttgttgca attgtgtgta tcattggact cttatcgtac accccacctg
2501 aaagacttaa ccactcttat cacgaaaata accagaagac gcaatacata
2551 actattggag gagcatccac tagtaaggtt tccacgaact gaatttactg
2601 ctttctagaa tagacaataa atggcaccta aacgcaacaa aggaggcagg
2651 aagacccgcg tgtccgatga gacggtgcga gctcctgctg ctggtggtgt
2701 gatacaacgc acaccaggta tccctccacg tattaggtcc accactattg
2751 gtacgcgagt atccaacaca gaattacttg ctggtgttaa tgttgcagca
2801 gcaggtgcat tttctgtcgt tggagccggc cttttcccca gcaacctcgg
2851 ttggctcaac gggattgctt ccaactacag caagtttaga tggctttcca
2901 taaagctcat ctatattccc attgtcccta caaccactgc tggtgctatg
2951 accatggctt tatcatacga cccggctgat gctacaccta ccagcttcca
3001 acaagtgcaa caaatgtata acagcataac tgcacctgta tgggctggat
3051 ttgatggagc tactgttcag ctattagggg atcgcccaac aactggtgcc
3101 gtgtgtatcg atgttgatgt caatcgattt ggattcacat ggtacaggta
3151 cgcaacctta gccgctatta cagcactcac tgcaaacgac aggaatctgt
3201 acattcctag cgtttgtaat gtggctactt ctggcgggtc agctgcgact
3251 aatgttggca acttaatgat aaagtacagc attgagctca ttgagcccat
3301 acccgctgcc atcaattaga tcccacatcc tggtgtggtt aatccagtga
3351 aaaatattag gaaatccatg gaattcacac cccatggagg attgcttgca
3401 tgatgcaggt atgctcagtc acactgtgag gtatcgatgc tggatcctgg
3451 caaacaggct tgacaggttt gggtggttcc aaaccgatgt atcactcgag
3501 atattcatag tactaagcta gaaaacatca tgcgtgcgca cacggccggc
3551 tacgtcctat cgtagccggg ggctccgg