Sequence of DPV Citrus tristeza virus
Citrus tristeza virus isolate S133-21 coat protein mRNA, complete cds.
ACC No: EU579403
Dated: 2009-01-13 | Length: 672 | CRC: -1117846170
ID EU579403; SV 1; linear; mRNA; STD; VRL; 672 BP. XX AC EU579403; XX DT 13-JAN-2009 (Rel. 99, Created) DT 13-JAN-2009 (Rel. 99, Last updated, Version 1) XX DE Citrus tristeza virus isolate S133-21 coat protein mRNA, complete cds. XX KW . XX OS Citrus tristeza virus OC Viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae; OC Closterovirus. XX RN [1] RP 1-672 RX PUBMED; 18992281. RA Nolasco G., Santos C., Silva G., Fonseca F.; RT "Development of an asymmetric PCR-ELISA typing method for citrus tristeza RT virus based on the coat protein gene"; RL J. Virol. Methods 155(2):97-108(2009). XX RN [2] RP 1-672 RA Myers L., Santos C., Nolasco G.; RT ; RL Submitted (19-MAR-2008) to the EMBL/GenBank/DDBJ databases. RL BioFIG, University of Algarve, Campus de Gambelas, Faro, Faro 8005-139, RL Portugal XX FH Key Location/Qualifiers FH FT source 1. .672 FT /organism="Citrus tristeza virus" FT /isolate="S133-21" FT /mol_type="mRNA" FT /country="Jamaica" FT /db_xref="taxon:12162" FT CDS 1. .672 FT /codon_start=1 FT /product="coat protein" FT /protein_id="ACE77140.1" FT /translation="MDDETKKLKNKNKEAKEGDDVVAAESSFGSVNLHIDPTLITMNDV FT RQLGTQQNAALNRDLFLTLKGKYPNLPDKDKDFHIAMMLYRLAVKSSSLQSDDDATGIT FT YTREGVEVDLSDKLWTDVVFNSEGIGNRTNALRVWGRTNDALYLAFCRQNRNLSYGGRP FT LDAGIPAGYHYLCADFLTGAGLTDLECAVYIQAKEQLLKKRGAGEVVVTNVRQLGKFNT FT R" XX SQ Sequence 672 BP; 193 A; 125 C; 173 G; 181 T; 0 other; eu579403 Length: 672 13-JAN-2009 Type: N Check: 1884 .. 1 atggacgacg aaacaaagaa attgaagaac aaaaacaagg aagcgaaaga 51 aggcgacgat gttgtagctg ccgagtcttc tttcggttcc gtaaacttac 101 acatcgatcc gactttgata acgatgaacg atgtgcgtca gttgggcacc 151 caacagaacg ctgctttgaa cagagactta ttccttactt tgaaagggaa 201 gtatcctaac ttacctgata aagataagga ctttcacata gctatgatgt 251 tgtatcgttt agcagttaag agttcatcat tacaaagcga tgacgacgcc 301 acgggtataa cgtacactcg ggagggtgtt gaagtggatt tgtctgataa 351 actttggact gacgtcgtgt ttaactctga gggtattggt aaccgtacta 401 acgcccttcg agtttggggt agaactaacg atgcccttta cttagctttt 451 tgcagacaga atcgcaattt gagttatggc ggacgtccgc tagacgcagg 501 gattccggcc gggtatcatt acttgtgtgc ggatttcttg actggagctg 551 gtttgactga cttagaatgt gctgtgtaca tacaagctaa agaacaatta 601 ttgaagaagc gaggggctgg tgaagtcgta gttactaatg tcaggcagct 651 tgggaaattc aacacacgtt ga