Sequence of DPV Maize streak virus

Maize streak virus isolate MSV-B1_Za-RawK-g30-2006, complete genome.

ACC No: EU628600

Dated: 2008-09-30 | Length: 2683 | CRC: -920098956

                
ID   EU628600; SV 1; circular; genomic DNA; STD; VRL; 2683 BP.
XX
AC   EU628600;
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DT   30-SEP-2008 (Rel. 97, Created)
DT   30-SEP-2008 (Rel. 97, Last updated, Version 1)
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DE   Maize streak virus isolate MSV-B1_Za-RawK-g30-2006, complete genome.
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KW   .
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OS   Maize streak virus
OC   Viruses; ssDNA viruses; Geminiviridae; Mastrevirus.
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RN   [1]
RP   1-2683
RX   PUBMED; 18753214.
RA   Varsani A., Shepherd D.N., Monjane A.L., Owor B.E., Erdmann J.B.,
RA   Rybicki E.P., Peterschmitt M., Briddon R.W., Markham P.G., Oluwafemi S.,
RA   Windram O.P., Lefeuvre P., Lett J.M., Martin D.P.;
RT   "Recombination, decreased host specificity and increased mobility may have
RT   driven the emergence of maize streak virus as an agricultural pathogen";
RL   J. Gen. Virol. 89(PT 9):2063-2074(2008).
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RN   [2]
RP   1-2683
RA   Varsani A., Shepherd D.N., Monjane A.L., Owor B.E., Erdmann J.B.,
RA   Rybicki E.P., Piterschmitt M., Briddon R.W., Markham P.G., Oluwafemi S.,
RA   Windram O.P., Lefeurve P., Lett J.-M.;
RT   ;
RL   Submitted (10-APR-2008) to the EMBL/GenBank/DDBJ databases.
RL   Electron Microscope Unit, University of Cape Town, RW James Bld,
RL   Rondebosch, Cape Town, WP 7701, South Africa
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FH   Key             Location/Qualifiers
FH
FT   source          1. .2683
FT                   /organism="Maize streak virus"
FT                   /isolate="MSV-B1_Za-RawK-g30-2006"
FT                   /mol_type="genomic DNA"
FT                   /country="South Africa"
FT                   /lat_lon="33.87 S 19.31 E"
FT                   /collection_date="2006"
FT                   /db_xref="taxon:10821"
FT   CDS             157. .462
FT                   /codon_start=1
FT                   /product="movement protein"
FT                   /protein_id="ACF40439.1"
FT                   /translation="MDPQNSFLLQPRVPTAAPTSGGVSWSRVGEVAILSFVGLICFYLL
FT                   YLWVLRDLILVLKARQGRSTEELIFGIQAVDRSNPIPNTQTPPSQVNPGPFVPGTG"
FT   CDS             473. .1207
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /protein_id="ACF40440.1"
FT                   /translation="MSTSKRKRGDDANWNKRTTKKKPSSAGLKKAGSKAERPSLQIQTL
FT                   QHAGSTMITVPSGGVCDLINTYARGSDEGNRHTSETLTYKIAVDYHFVADSQACKYSNT
FT                   GTGVMWLVYDTTPGGQAPTPQTIFAYPDTLKAWPATWKVSRELCHRFVVKRRWLFNMET
FT                   DGRIGSDIPPSNASWKPCKRNIYFHKFTSGLGVRTQWKNVTDGGVGAIQRGALYMVIAP
FT                   GNGLTFTAHGQTRLYFKSVGNQ"
FT   CDS             complement(1711. .2529)
FT                   /codon_start=1
FT                   /product="RepA"
FT                   /protein_id="ACF40441.1"
FT                   /translation="MASSSSNRQFSHRNVNTFLTYPHCPENPEIVCQMIWELVGRWTPK
FT                   YIICAQEAHKDGDMHLHALLQTEKPVRITDSRFFDIEGFHPNIQSAKSVNKVRDYILKE
FT                   PLAVFERGTFIPRKSSFQGNPSKGNSEKKPSKDEIMREIISHSTSKLEYLSMIRKEFPY
FT                   DWATKLQYFEYSANKLFPEIQEEFISPHPPSSPDLLCNESIKDWLQPNIFQVSPESYML
FT                   LQPTCYTLEDAISDLEWMEKLSSQQMKEQESRASTSSVQQELGNLLGPEA"
XX
SQ   Sequence 2683 BP; 700 A; 618 C; 664 G; 701 T; 0 other;

eu628600 Length: 2683  30-SEP-2008  Type: N  Check: 6272  ..

       1  taatattacc gcgccttctt tttctgcgag ggcccgtagg gaccgagcga
      51  tttgatttaa agttcggttc tgctttgtct gatttatcta aagcagccca
     101  atctaaagaa accggtcccc tgcgactata aattgtttca caagtgcgat
     151  tcatttatgg atccacagaa ctcctttctt ctacagccgc gggtacccac
     201  agcagctccg acatccggag gagtgtcgtg gagtcgcgtc ggcgaggtag
     251  ctattttgag ctttgttgga ttgatttgct tttacctgct ttacctttgg
     301  gtgctgagag atcttatctt agttctgaag gctcgacaag gcagatccac
     351  ggaggagctg atatttggaa tacaagctgt ggataggagc aaccctatcc
     401  ctaatacaca gacaccacca agtcaggtga atcccgggcc gtttgttcca
     451  ggcacgggat aagcaatcag ccatgtccac gtccaagagg aagcggggag
     501  atgatgcgaa ctggaataag cggacgacta agaagaagcc atcttcagct
     551  ggtctgaaga aggctggaag caaggccgaa aggccatccc ttcagatcca
     601  gacactccag catgctgggt ccaccatgat aacagtcccc tccggaggag
     651  tatgtgatct catcaacacc tatgcccgag gatccgacga gggcaaccgc
     701  cacaccagcg agactctgac gtacaagatt gccgtcgact accacttcgt
     751  tgcagactcg caagcctgca agtattctaa caccgggacc ggtgtgatgt
     801  ggctggtgta cgacaccact cccggcggac aagcgccgac cccacaaacg
     851  atatttgcat atccggacac gctgaaagct tggccggcaa catggaaagt
     901  gagccgggag ctgtgtcatc gcttcgtggt gaaacggcga tggttgttca
     951  acatggagac cgacggtcga attggttcgg acatccctcc ttcgaatgca
    1001  agttggaagc cgtgcaagcg caacatctac ttccacaagt tcacgagtgg
    1051  gttgggagtg agaacgcagt ggaagaatgt aacggacgga ggagttggtg
    1101  cgatacagag aggagctctg tacatggtca ttgcccctgg caatggcctt
    1151  acatttactg cccatgggca gacccgtctg tactttaaga gtgtcggcaa
    1201  ccagtaatga ataaaaactc cgttttatta tatctgatga atgctgaaag
    1251  cttacattaa tatgtcgtgt gatggcacga aaaacacact ggaacgcagc
    1301  cccgggctaa agaccgggtc tcaagagacc ctgcgataca aaacatcgaa
    1351  aaaacaagat ctatatgaat tacacttcct ccgtaggagg aagcacaggg
    1401  ggagaatacc acttctcccc cggcgacatt ttataaatca tgcagtttgc
    1451  ctcgaaatac tccagctgcc ctggagtcat ttcattcatc cagtcttcat
    1501  cccagttggc gaggatgatt gtaggcttag acttcatctg aactttcttc
    1551  ttcttgccat attttggatt tacaacgaac tctttctgac agccaactaa
    1601  ctgtttccaa caaggacaga atttaaatgg aatatcatct acgatgttgt
    1651  agattgcgtc ttcgttgtaa gaagaccaat caacattatt ttgccaataa
    1701  ttatgaagcc ctaagcttct ggcccaagta gatttcccag ttcttgttgg
    1751  accgacgatg tagaggctct gctttcttgt tccttcatct gttggctgga
    1801  taatttttcc atccattcaa ggtcagagat agcatcttcg agggtgtaac
    1851  aggtaggttg aagaagcata tatgattcgg gactaacctg aaagatgtta
    1901  ggctggagcc aatctttgat tgactcatta caaagaagat caggtgaaga
    1951  gggtggatga ggactgatga actcttcctg aatctcaggg aacaatttat
    2001  ttgcagagta ttcaaaatac tgcaattttg tggcccagtc ataggggaat
    2051  tctttacgaa tcatagagag gtactctagc tttgaagtgg agtgtgaaat
    2101  aatctctctc attatttcat ctttggaagg tttcttttca gaatttccct
    2151  tggaaggatt tccttggaag cttgacttcc taggaatgaa agtacctctc
    2201  tcaaacacag ccagaggttc cttgagaatg taatccctga ccttgtttac
    2251  tgattttgca ctctgaatgt ttgggtggaa cccttcgata tcaaagaacc
    2301  ttgagtcagt gattcttacc ggtttttctg tctggagtaa tgcatgtaaa
    2351  tgcatatctc cgtctttgtg tgcctcttgg gcacatatga tatacttcgg
    2401  ggtccaacga ccaacgagct cccaaatcat ctgacagacg atttctggat
    2451  tttctggaca gtgtggatat gttaggaacg tgttaacgtt cctgtgtgag
    2501  aactgacggt tggatgagga ggaggccata tcggacgact ccgagcagct
    2551  tgcgggatgg caggatggga gctcgaaact ctatatcaac cggcttgcgc
    2601  cttcgaaatc cgccgctccc ccttttatag tggttgttaa tgggccggac
    2651  cgggccggcc cagcaggaaa agaaggcgcg caa