Sequence of DPV Maize streak virus
Maize streak virus isolate MSV-B2_Ug-BusA-2005, complete genome.
ACC No: EU628611
Dated: 2008-09-30 | Length: 2682 | CRC: 217464411
ID EU628611; SV 1; circular; genomic DNA; STD; VRL; 2682 BP.
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AC EU628611;
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DT 30-SEP-2008 (Rel. 97, Created)
DT 30-SEP-2008 (Rel. 97, Last updated, Version 1)
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DE Maize streak virus isolate MSV-B2_Ug-BusA-2005, complete genome.
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KW .
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OS Maize streak virus
OC Viruses; ssDNA viruses; Geminiviridae; Mastrevirus.
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RN [1]
RP 1-2682
RX PUBMED; 18753214.
RA Varsani A., Shepherd D.N., Monjane A.L., Owor B.E., Erdmann J.B.,
RA Rybicki E.P., Peterschmitt M., Briddon R.W., Markham P.G., Oluwafemi S.,
RA Windram O.P., Lefeuvre P., Lett J.M., Martin D.P.;
RT "Recombination, decreased host specificity and increased mobility may have
RT driven the emergence of maize streak virus as an agricultural pathogen";
RL J. Gen. Virol. 89(PT 9):2063-2074(2008).
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RN [2]
RP 1-2682
RA Varsani A., Shepherd D.N., Monjane A.L., Owor B.E., Erdmann J.B.,
RA Rybicki E.P., Piterschmitt M., Briddon R.W., Markham P.G., Oluwafemi S.,
RA Windram O.P., Lefeurve P., Lett J.-M.;
RT ;
RL Submitted (10-APR-2008) to the EMBL/GenBank/DDBJ databases.
RL Electron Microscope Unit, University of Cape Town, RW James Bld,
RL Rondebosch, Cape Town, WP 7701, South Africa
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FH Key Location/Qualifiers
FH
FT source 1. .2682
FT /organism="Maize streak virus"
FT /specific_host="Digitaria ciliaris"
FT /isolate="MSV-B2_Ug-BusA-2005"
FT /mol_type="genomic DNA"
FT /country="Uganda"
FT /lat_lon="0.45 N 34.07 E"
FT /collection_date="2005"
FT /db_xref="taxon:10821"
FT CDS 157. .462
FT /codon_start=1
FT /product="movement protein"
FT /protein_id="ACF40472.1"
FT /translation="MDPQNTFFVQPRVPTAAPTSGGVPWSRVGEVAILSFVGLICFYLL
FT YLWVLRDLILVLKARQGRSTEELIFGIQAVDRSNPIPNTQAPPSQGNPGPFVPGTG"
FT CDS 473. .1207
FT /codon_start=1
FT /product="coat protein"
FT /protein_id="ACF40473.1"
FT /translation="MSTSKRKRGDDANWNKRSTKKKPASAGLKKAGAKADRPSLQIQTL
FT QHAGSTMITVPSGGVCDLINTYARGSDEGNRHTSETLTYKIAVDYHFVADAQACKYSNT
FT GTGVMWLVYDTTPGGQAPTPQTIFAYPDTLKAWPATWKVSRELCHRFVVKRRWLFNMET
FT DGRIGSDIPPSNASWKPCKRNIYFHKFTSGLGVRTQWKNVTDGGVGAIQRGALYMVIAP
FT GNGLTFTAHGQTRLYFKSVGNQ"
FT CDS complement(1711. .2529)
FT /codon_start=1
FT /product="RepA"
FT /protein_id="ACF40474.1"
FT /translation="MASSSSNRQFSHRNVNTFLTYPHCPENPEIVCQMIWELVGRWTPK
FT YIICAREAHKDGDMHLHALVQTDKPVRITDSRFFDINGFHPNIQSAKSVNKVRDYILKE
FT PLALFERGTFIPRKSSFLGNSSKGNSEKKPSKDEIMREIISHSTSKLEYLSLVRKEFPY
FT DWATKLQYFEYSANKLFPEIQEEFISPHPPSSPDLLCNESIKDWLQPNIYQVSPESYML
FT LQPTCYTLEDAISDLEWMDKLSSQQMKAQESRASTSSVQQELENLLGPEA"
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SQ Sequence 2682 BP; 705 A; 618 C; 668 G; 691 T; 0 other;
eu628611 Length: 2682 30-SEP-2008 Type: N Check: 9195 ..
1 taatattacc gcgccttctt tttctgcgag ggcccgaagg gaccgagcga
51 tttgatttaa agttcggttc tgctttgtct gatttatcta aagcagtcca
101 atctaaagaa accggtcccc tgcgactata aattgcctca caagtgcgat
151 tcattcatgg atccacagaa taccttcttt gttcagccgc gggtacccac
201 agcagctccg acatccggag gagtgccgtg gagtcgcgtc ggcgaggtag
251 ctattttgag ctttgttgga ttgatttgct tttacctgct ttacctttgg
301 gtgctgagag atcttatctt agttttgaag gcaagacaag gcagatccac
351 ggaggagctg atatttggaa tacaagctgt ggataggagc aaccctatcc
401 ctaatacaca agcaccacca agtcagggga atcccggacc gtttgtaccc
451 gggacgggat aagcaatcag ccatgtctac gtccaagagg aagcgaggag
501 atgatgcgaa ctggaataag cggtcgacta agaagaagcc tgcttcagct
551 ggtctgaaga aggctggagc gaaggccgat aggccatccc tccagatcca
601 gacactccag catgctgggt ccaccatgat aacagtcccc tccggaggag
651 tatgtgacct catcaacacc tatgcccgag gatccgacga gggcaaccgc
701 cacaccagcg agactctgac gtacaagatt gccgtcgact accacttcgt
751 cgcagacgcg caagcctgca agtactccaa caccggaacc ggtgtgatgt
801 ggctggtgta tgacaccact cccggcggac aagcgccgac tccgcaaacc
851 atatttgcct acccggacac gctgaaagct tggccggcaa catggaaagt
901 gagccgggag ctgtgtcatc gcttcgtggt gaaacggcga tggttgttca
951 acatggagac cgacggtcga attggttcgg acatccctcc ttcgaatgca
1001 agttggaagc cgtgcaagcg caacatctac ttccacaagt tcacgagtgg
1051 gttgggagtg agaacgcagt ggaagaatgt aacggacgga ggagttggtg
1101 cgatacagag aggagccttg tacatggtca ttgcccctgg caatggcctt
1151 acatttactg cccatgggca gacccgtctg tactttaaga gtgttggcaa
1201 ccagtaatga ataaaaactg cgttttatta tatctgatga atgctcaaag
1251 cttacattaa tatgtcgtgc gatggcacga aaacacacta tcaatacagg
1301 ggggaggtag ccggcggcta agggaacgaa gttcgtgggc aaaacatcaa
1351 aaaaacaaga ccaatcgaat taaactgcct ccgtaggagg cagcacaggg
1401 ggagaatacc acttctcccc cggcgacata atataaatca tgcagtttgc
1451 ctcgaaatac tccagctgcc ctggagtcat ttccttcatc cagtcttcat
1501 ccgagttggc gagtattatt gtaggcttag acttcatctg tactttcttc
1551 ttctttccat attttggatt tacaacgaac tctttctgac agccaactaa
1601 ctgtttccaa caaggacaat atttaaaagg aatatcatct acgatgttgt
1651 agattgcgtc ttcgttgtag gaagaccaat caacattatt ttgccagtaa
1701 ttatgaaccc ctaggcttct ggcccaagta gattttccag ttcttgttgg
1751 accgacgatg tagaggctct gctttcttgt gctttcatct gttggctgga
1801 taatttatcc atccattcaa ggtcagagat agcatcttcg agggtataac
1851 aggttggttg aagaagcatg tatgattctg gactaacctg atagatgttt
1901 ggctggagcc aatctttgat tgactcatta caaagaagat caggtgaaga
1951 tggtggatga ggactgatga actcttcctg aatctcagga aacaatttat
2001 ttgcagagta ttcaaaatac tgcaatttag tggcccagtc ataggggaat
2051 tctttacgaa ccaaggagag gtactcaagc tttgaagtgg agtgtgaaat
2101 aatctctctc attatttcat cttttgaagg tttcttttca gaattcccct
2151 tggaagaatt tcctaggaag cttgacttcc taggaatgaa agtacctctc
2201 tcaaacagag ccagaggttc cttgagaatg taatccctga ctttgtttac
2251 agattttgca ctctgaatgt ttgggtggaa cccgttgata tcaaagaacc
2301 ttgagtcagt gattcttacc ggcttatctg tctggactaa tgcatgtaaa
2351 tgcatatctc catctttgtg tgcctctcgg gcacatataa tatacttagg
2401 ggtccaacga ccgacgagct cccaaatcat ctgacagacg atttctggat
2451 tttctggaca gtgtggatat gttaagaacg tgttaacgtt cctgtgtgag
2501 aactgacggt tggatgagga ggaggccata tcggacgact ccgagcagct
2551 tgccggatgg caggatggga gctccaaact ctatatcaac cgggtgcgcc
2601 ttcgaaatcc gccgctcccc tctttatagt ggttgtttat gggccggacc
2651 gggccggccc agcaggaaaa gaaggcgcgc aa