Sequence of DPV Maize streak virus
Maize streak virus isolate MSV-F_Ug-SN117-2005, complete genome.
ACC No: EU628630
Dated: 2008-09-30 | Length: 2687 | CRC: 1580677671
ID EU628630; SV 1; circular; genomic DNA; STD; VRL; 2687 BP.
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AC EU628630;
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DT 30-SEP-2008 (Rel. 97, Created)
DT 30-SEP-2008 (Rel. 97, Last updated, Version 1)
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DE Maize streak virus isolate MSV-F_Ug-SN117-2005, complete genome.
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KW .
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OS Maize streak virus
OC Viruses; ssDNA viruses; Geminiviridae; Mastrevirus.
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RN [1]
RP 1-2687
RX PUBMED; 18753214.
RA Varsani A., Shepherd D.N., Monjane A.L., Owor B.E., Erdmann J.B.,
RA Rybicki E.P., Peterschmitt M., Briddon R.W., Markham P.G., Oluwafemi S.,
RA Windram O.P., Lefeuvre P., Lett J.M., Martin D.P.;
RT "Recombination, decreased host specificity and increased mobility may have
RT driven the emergence of maize streak virus as an agricultural pathogen";
RL J. Gen. Virol. 89(PT 9):2063-2074(2008).
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RN [2]
RP 1-2687
RA Varsani A., Shepherd D.N., Monjane A.L., Owor B.E., Erdmann J.B.,
RA Rybicki E.P., Piterschmitt M., Briddon R.W., Markham P.G., Oluwafemi S.,
RA Windram O.P., Lefeurve P., Lett J.-M.;
RT ;
RL Submitted (10-APR-2008) to the EMBL/GenBank/DDBJ databases.
RL Electron Microscope Unit, University of Cape Town, RW James Bld,
RL Rondebosch, Cape Town, WP 7701, South Africa
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FH Key Location/Qualifiers
FH
FT source 1. .2687
FT /organism="Maize streak virus"
FT /specific_host="Digitaria ciliaris"
FT /isolate="MSV-F_Ug-SN117-2005"
FT /mol_type="genomic DNA"
FT /country="Uganda"
FT /lat_lon="0.58 N 33.53 E"
FT /collection_date="2005"
FT /db_xref="taxon:10821"
FT CDS 157. .465
FT /codon_start=1
FT /product="movement protein"
FT /protein_id="ACF40529.1"
FT /translation="MDPQNSFLLQPRVPTATPSQTGGVPWSRVGEVAILSFVALICFYL
FT LYLWVLRDLILVLKARQGRSTEELVFGEQGVERIEPIPNRSASAGPVNPGPFIPGQG"
FT CDS 476. .1210
FT /codon_start=1
FT /product="coat protein"
FT /protein_id="ACF40530.1"
FT /translation="MSTSKRKRGDDASWKKGTAKKKTSAAGLKKSATKAERPSLQIQTL
FT LHAGTSMITVPSGGICDLISTYARGSDEGNRHTSETLTYKISLDYHFVADAASCKYSNV
FT GTGVVWLIYDTTPGGQAPTTKQIFAYNDNLAAWPTTWKVSRELCHRFVVKRRWLFTMET
FT DGRIGSDIPPSNASWKPCKRNINFHKFTSGLGVRTMWKNVTDGGVGSIQRGALYMCIAP
FT GNGLTFTAHGQTRLYFKSVGNQ"
FT CDS complement(1716. .2534)
FT /codon_start=1
FT /product="RepA"
FT /protein_id="ACF40531.1"
FT /translation="MASSSSNRQFSHRNANTFLTYPHCPENPEIVCQIIWELVGRWTPK
FT YIICAREAHRDGDLHLHALIQTEKPVRITDSRFFDIKGFHPNIQSAKSVNKVRDYILKE
FT PLALFERGTFIPRKSPFLGKRDSEGNSKKPSKDEIMQEIISHSTSKQEYLSLVRKELPY
FT DWATKLQYFEYSANKLFPEIQEEFISPHPPSSPDLLCNESIKDWLQPNIYQVSPESYML
FT LQPTCYTVEDAISDLEWMDKLSSQQMKDQESRASTSSVQQELENLLGPEA"
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SQ Sequence 2687 BP; 702 A; 606 C; 668 G; 711 T; 0 other;
eu628630 Length: 2687 30-SEP-2008 Type: N Check: 9408 ..
1 taatattacc gcgccttctt tttctgcgag ggcccgcaag ggcccgagcg
51 atttgattta aagtttagat ctgctttgtt tgatttatct aaagcagcca
101 aatctaaaga aaccggtccc gggcactata aattgcctaa caagtgcgat
151 tcattcatgg atccacagaa ctcctttctt ctacagccgc gggtacccac
201 agcgactcct tcgcagacag gaggagtgcc gtggagtcgc gtcggcgagg
251 tagctatttt gagctttgtt gctttgattt gcttttacct gctttacctt
301 tgggtactga gagatttgat cttagttctg aaggcaagac aagggagatc
351 cacggaagag ctggtattcg gcgaacaagg agtggagagg atagaaccta
401 tccctaatag atcagcttct gcaggtccag tgaatcccgg accatttatt
451 cctggtcagg gataagcaat cagccatgtc cacgtccaag aggaagcggg
501 gagatgatgc gagctggaag aaggggacgg ctaagaagaa gacttctgca
551 gctggtctga agaagtctgc aaccaaggcc gagaggccct cactccagat
601 ccaaacactc ttgcatgcag ggacgtcaat gataacagtc ccctccggag
651 gaatatgcga cctaatcagc acctatgccc gaggttcaga tgagggcaat
701 cgtcacacga gcgagactct tacgtacaag atatccctcg actaccactt
751 cgttgccgac gcagcatcct gcaagtactc caacgttggg actggcgtgg
801 tgtggctcat ctacgacacg acgcccggcg gacaagcgcc gacgacaaaa
851 cagatatttg cctacaacga caacttggcg gcttggccga cgacctggaa
901 agtgagccgg gagttgtgtc accgcttcgt ggtgaaacgc cgttggttgt
951 ttaccatgga gaccgacggt cgcattggtt cggacatacc tccgtccaat
1001 gcaagttgga agccgtgcaa gcggaacatt aacttccaca agttcacgag
1051 tgggttggga gtaagaacga tgtggaagaa tgtcacggac ggtggtgttg
1101 gtagcataca acgaggagct ttgtatatgt gcattgcccc tggcaatgga
1151 cttacattta ctgcccatgg gcagacccgt ctgtacttta agagtgtcgg
1201 caaccagtga tgaataaaaa ctcccgtttt attatatctg atgaatgctg
1251 aaagcttaca ttaatatgtc agccgattgg ctgaacgaaa aatacatagc
1301 gcagccgcgg gctaaagacc gcgtctcaag cgaccctgaa catacaataa
1351 tcgaaaaaac aagatgatta tgaattaaac ttcctccgta ggaggaagca
1401 cagggggaga ataccacttc tcccccggcg acataacata caccatgcaa
1451 tttgcctcga aatactccag ctgccctgga gtcatttcct tcatccagtc
1501 ttcatccgag ttggcgagga taattgtagg tttagacttc atctgaactt
1551 tcttcttctt gccatattta ggatttacaa cgaattcttt ttgacagcca
1601 actaactgtt tccaacaagg acagtattta aatggaatat catctacgat
1651 gttgtagatt gcgtcttcgt tgtaagaaga ccaatcaaca ttattttgcc
1701 agtaattatg aactcctagg cttctggccc aagtagattt tccagttctt
1751 gttggaccga cgatgtagag gctctgcttt cttgatcctt catctgttgg
1801 ctggataatt tatccatcca ttcaaggtca gagatagcat cctcgacggt
1851 ataacaggtt ggttgaagaa gcatgtatga ttcgggacta acctgatata
1901 tgttaggctg gagccaatct ttgattgact cgttacaaag gagatcaggt
1951 gaagagggtg gatgaggact gatgaactct tcctgaatct caggaaacag
2001 tttatttgca gagtattcaa aatactgcaa tttggtggcc cagtcataag
2051 gcaattcctt acgaacaaga gagaggtact cttgctttga agtggagtgt
2101 gaaataatct cttgcattat ttcatctttg gaaggttttt tgctatttcc
2151 ctctgaatct ctttttccta ggaatggtga cttcctagga atgaaagtac
2201 ctctctcaaa taaagccaga ggttccttga gaatgtagtc gcgaaccttg
2251 tttactgact ttgcactctg aatgtttggg tggaaccctt tgatatcaaa
2301 gaaccttgag tcagtgatcc ttaccggttt ctctgtttgg attaatgcat
2351 gtaaatgcaa atctccatct ctatgtgcct ctcgggcaca tatgatgtac
2401 ttaggggtcc aacgaccgac gagctcccag ataatctgac agacgatttc
2451 tggattttct ggacagtgtg gataggttag gaacgtgtta gcgttcctgt
2501 gtgagaactg acggttggat gaggaggagg ccatatcgga cgactccgag
2551 ctgtttgcgg gatggcaggt tgggagctct caaaactcta tgtaaccggt
2601 gcgccttcaa aatccgccgc tcccctcttt atagtggttg tttctgggcc
2651 ggaccgggcc ggcccagcag aaaaagaagg cgcgcaa