Sequence of DPV Maize streak virus

Maize streak virus isolate MSV-G_Ng-EleA-g227-2007, complete genome.

ACC No: EU628635

Dated: 2008-09-30 | Length: 2688 | CRC: 1811359684

                
ID   EU628635; SV 1; circular; genomic DNA; STD; VRL; 2688 BP.
XX
AC   EU628635;
XX
DT   30-SEP-2008 (Rel. 97, Created)
DT   30-SEP-2008 (Rel. 97, Last updated, Version 1)
XX
DE   Maize streak virus isolate MSV-G_Ng-EleA-g227-2007, complete genome.
XX
KW   .
XX
OS   Maize streak virus
OC   Viruses; ssDNA viruses; Geminiviridae; Mastrevirus.
XX
RN   [1]
RP   1-2688
RX   PUBMED; 18753214.
RA   Varsani A., Shepherd D.N., Monjane A.L., Owor B.E., Erdmann J.B.,
RA   Rybicki E.P., Peterschmitt M., Briddon R.W., Markham P.G., Oluwafemi S.,
RA   Windram O.P., Lefeuvre P., Lett J.M., Martin D.P.;
RT   "Recombination, decreased host specificity and increased mobility may have
RT   driven the emergence of maize streak virus as an agricultural pathogen";
RL   J. Gen. Virol. 89(PT 9):2063-2074(2008).
XX
RN   [2]
RP   1-2688
RA   Varsani A., Shepherd D.N., Monjane A.L., Owor B.E., Erdmann J.B.,
RA   Rybicki E.P., Piterschmitt M., Briddon R.W., Markham P.G., Oluwafemi S.,
RA   Windram O.P., Lefeurve P., Lett J.-M.;
RT   ;
RL   Submitted (10-APR-2008) to the EMBL/GenBank/DDBJ databases.
RL   Electron Microscope Unit, University of Cape Town, RW James Bld,
RL   Rondebosch, Cape Town, WP 7701, South Africa
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .2688
FT                   /organism="Maize streak virus"
FT                   /specific_host="Urochloa lata"
FT                   /isolate="MSV-G_Ng-EleA-g227-2007"
FT                   /mol_type="genomic DNA"
FT                   /country="Nigeria"
FT                   /lat_lon="7.85 N 3.94 E"
FT                   /collection_date="2007"
FT                   /db_xref="taxon:10821"
FT   CDS             157. .465
FT                   /codon_start=1
FT                   /product="movement protein"
FT                   /protein_id="ACF40544.1"
FT                   /translation="MDPQNSFLLQPRVPTATPSQTGGVPWSHVGEVAILSFVGLICLYL
FT                   LYLWVLRDLILVLKARQGRSTEELVFGEQGVDRREPIPNRSASAGPVNPGPFVPGSG"
FT   CDS             476. .1210
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /protein_id="ACF40545.1"
FT                   /translation="MSTSKRKRGDDANWKKGTAKKKTSAAGLKKSVSKADRPSLQIQTL
FT                   LHAGTTMITVPSGGICDLISTYARGSDEGNRHTSETLTYKMSLDYHFVADAAACKYSNI
FT                   GTGVVWLVYDTTPGGQAPTTKQIFAYNDSLAAWPTTWKVSREMCHRFVVKRRWLFTMET
FT                   NGRIGSDMPPSNAIWNPCKRSINFHKFTSGLGVRTMWKNVTDGGVGSIQRGALYMCIAP
FT                   GNGLTFTAHGQTRLYFKSVGNQ"
FT   CDS             complement(1716. .2534)
FT                   /codon_start=1
FT                   /product="RepA"
FT                   /protein_id="ACF40546.1"
FT                   /translation="MASSSSNRQFSHRNANTFLTYPQCPENPEIVCQMIWELVGHWNPK
FT                   YIICAREAHRDGNLHLHALVQTEKPVRTTDPRFFDIKGFHPNIQSAKSVNKVRDYILKE
FT                   PLALFERGTFIPRKSPFLGKSDSEGSSKKPTKDEIMREIISHSTNKQEYLSMIQKEFPY
FT                   DWATKLQYLEYSAKKLFPEIQEEFIDPHPPSSPDLLCSESIKDWLQPNIFQVSREAYML
FT                   LQPTCYSVQDAISDLQWMDNLSSQQMKDQESRASTSSVQQELENLLGPEA"
XX
SQ   Sequence 2688 BP; 673 A; 617 C; 679 G; 719 T; 0 other;

eu628635 Length: 2688  30-SEP-2008  Type: N  Check: 9724  ..

       1  taatattacc gcgccttctt ttcctgcgag ggcccgcaag ggcccgagcg
      51  atttgattta aagtttagat ctgctttgtt tgatttatct aaagcagtcc
     101  aatctaaaga aaccggtccc ggtcactata aattgcctaa caagtgcgat
     151  tcattcatgg atccacagaa ctcctttctt ctacagccgc gggtacccac
     201  agcgactcct tcgcagacag gaggagtgcc gtggagtcac gttggcgagg
     251  tagctatttt gagctttgtt ggtttgattt gcctttacct gctttacctt
     301  tgggtgctga gagatcttat cttagttctg aaggctcgac aagggagatc
     351  cacggaggag ctggtattcg gcgaacaagg tgtggatagg agagaaccta
     401  tccctaatag atcagcttct gcaggtccag tgaatcccgg accatttgtt
     451  cctggttcgg gataagcaat cagccatgtc cacgtccaag aggaagcggg
     501  gagatgatgc gaactggaag aaggggacgg ctaagaagaa gacttctgca
     551  gctggcctga agaagtctgt aagtaaggcc gataggccat ccctccaaat
     601  tcagacactc ttgcatgcgg ggaccacaat gataactgtc ccctccggag
     651  gtatttgcga cctcatcagc acctatgccc gaggttcaga tgagggcaac
     701  cgacacacca gcgagactct tacgtacaag atgtccctcg actaccactt
     751  cgttgctgac gcggcagcgt gcaagtactc caacattgga accggcgtgg
     801  tctggctggt ttacgacact actcccggcg gacaagcccc gactaccaaa
     851  cagatatttg cctacaacga cagcctagct gcctggccga cgacctggaa
     901  ggtgagccgg gagatgtgtc accgcttcgt ggtgaaacgc cgttggctgt
     951  tcaccatgga gaccaacggt cgcatcggtt cggacatgcc tccatcgaac
    1001  gccatttgga acccctgcaa gcggagcatt aacttccaca agttcacgag
    1051  tgggttggga gtaagaacga tgtggaagaa tgtcacagac ggtggcgttg
    1101  gttcgataca gagaggagcc ttgtatatgt gcattgcccc tggcaatgga
    1151  cttacattta ctgcccatgg gcagacccgt ctgtacttta agagtgttgg
    1201  caaccagtaa tgaataaaaa ctcccgtttt attatattga tgaatgctga
    1251  aagcttacat taatatgtcg tgcgatggca cgaaaacaca cgctatcaat
    1301  acaggggggt agtcggaggg cggctaaggg tggtgctcgg cgggcaaaac
    1351  atcaaaaaat caagatgttt atgaatgttc tgcctccgta ggaggcagct
    1401  ccaggggaga ataccacttc tcccctggct gcatgatgta tatcatgcag
    1451  tttgcctcga aatactccag ctgccctgga gtcatttcct tcatccaatc
    1501  ttcatccgag ttggcgagaa tgattgtagg tttagacttc atctgaacct
    1551  tcttcttctt cccatactta ggatttacaa tgaactcttt ttgacagcca
    1601  actaactgtt tccaacaagg acagaattta aacgggatat catctactat
    1651  gttgtagatt gcgtcttcgt tgtatgaaga ccaatcaaca ttattttgcc
    1701  agtaattatg aacccctagg cttctggccc aagtagattt tccagttctt
    1751  gttggaccga cgatgtagag gctctgcttt cttgatcttt catctgttgg
    1801  ctggataagt tatccatcca ttgaaggtca gaaattgcat cctggacgga
    1851  ataacaggta ggttgaagga gcatgtaagc ttcgcgacta acctgaaaga
    1901  tgttaggctg gagccaatct ttgattgact cactacaaag caaatcaggt
    1951  gatgagggtg gatgaggatc gatgaactct tcctgaatct ccggaaaaag
    2001  tttctttgca gagtattcaa gatactgcaa ttttgtggcc cagtcataag
    2051  gaaactcttt ctggatcatt gagaggtact cttgcttatt agtggagtgg
    2101  gaaataatct ctctcattat ttcatctttg gtaggtttct ttgaacttcc
    2151  ctctgaatca gattttccta ggaagggaga cttcctagga atgaaagtac
    2201  ctctctcaaa taaagccaga ggttccttga gaatgtagtc tcgaaccttg
    2251  ttaactgatt ttgcactctg aatgtttggg tggaaccctt tgatatcaaa
    2301  gaaccttggg tcagttgttc ttaccggttt ctccgtctgg actaatgcat
    2351  gtaaatgcag atttccatct ctatgtgcct ctcgggcaca tatgatgtac
    2401  ttagggttcc agtgaccaac gagctcccag atcatctgac agacgatttc
    2451  tggattttct ggacattgtg gatatgttag gaacgtgtta gcgttcctgt
    2501  gtgagaactg acggttggat gaggaggagg ccatatccga cgacggagga
    2551  tgatgctagg ggatggcaga ttgggagctc ccaaactcta tcctaccggt
    2601  gcgccttcga aatccgccgc tgccctcttt atagtggttg tattctgggc
    2651  cggaccgggc cggcccagca ggaaaagaag gcgcgcac