Sequence of DPV Citrus tristeza virus

Citrus tristeza virus isolate 16J clone 9-2 coat protein (CP) gene, complete cds.

ACC No: EU660919

Dated: 2012-02-09 | Length: 672 | CRC: -1078675497

                
ID   EU660919; SV 1; linear; genomic RNA; STD; VRL; 672 BP.
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AC   EU660919;
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DT   30-JAN-2009 (Rel. 99, Created)
DT   09-FEB-2012 (Rel. 111, Last updated, Version 2)
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DE   Citrus tristeza virus isolate 16J clone 9-2 coat protein (CP) gene,
DE   complete cds.
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KW   .
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OS   Citrus tristeza virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae;
OC   Closterovirus.
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RN   [1]
RP   1-672
RA   Cerni S., Skoric D., Ruscic J., Krajacic M., Papic T., Djelouah K.,
RA   Nolasco G.;
RT   "East Adriatic - a reservoir region of severe Citrus tristeza virus
RT   strains";
RL   Eur. J. Plant Pathol. 124(4):701-706(2009).
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RN   [2]
RP   1-672
RA   Cerni S., Ruscic J., Skoric D.;
RT   ;
RL   Submitted (18-APR-2008) to the INSDC.
RL   Biology, University of Zagreb, Faculty of Science, Marulicev trg 9a, Zagreb
RL   HR-10000, Croatia
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FH   Key             Location/Qualifiers
FH
FT   source          1. .672
FT                   /organism="Citrus tristeza virus"
FT                   /isolate="16J"
FT                   /mol_type="genomic RNA"
FT                   /country="Croatia"
FT                   /isolation_source="Citrus limon"
FT                   /clone="9-2"
FT                   /db_xref="taxon:12162"
FT   gene            1. .672
FT                   /gene="CP"
FT   CDS             1. .672
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /db_xref="GOA:B9UIW9"
FT                   /db_xref="InterPro:IPR002679"
FT                   /db_xref="UniProtKB/TrEMBL:B9UIW9"
FT                   /protein_id="ACF76947.1"
FT                   /translation="MDDETKTLKNKNKETKEGDNAVAAESSFGSINLHIDPTLIAMNDV
FT                   RQLGTQQNTALNRDLLLTLEGKHPDLPDKDKDFHIAMMLYRLAVKSSSLQSDDDTTGIT
FT                   YTREGVEVDLPDKLWTDVVFNSKGIGNRANALRVWGRTNDALYLAFCRQNRNLSYGGRP
FT                   LDAGIPAGYHYLCADFLTGAGLTDLECAVYIQAKEQLLKKRGADEVVVTNVRQLGKFNT
FT                   R"
XX
SQ   Sequence 672 BP; 195 A; 132 C; 169 G; 176 T; 0 other;

eu660919 Length: 672  09-FEB-2012  Type: N  Check: 13  ..

       1  atggacgacg aaacaaagac attgaagaac aaaaacaagg aaacgaaaga
      51  aggcgacaac gctgttgctg ccgagtcttc tttcggttcc ataaacttac
     101  acatcgatcc aactttgata gcgatgaatg atgtgcgtca gttgggtacc
     151  cagcagaaca ctgctttaaa cagagactta cttcttactt tggaagggaa
     201  gcatcctgac ttacctgata aagataagga ctttcatata gctatgatgt
     251  tgtatcgttt agcagttaag agttcatcat tacaaagcga tgacgacact
     301  acgggtataa cgtacactcg ggagggtgtc gaagtggatt tgcctgacaa
     351  actttggacc gacgtcgtgt ttaactccaa gggtattggc aaccgtgcta
     401  acgcccttcg agtttggggt agaactaacg atgcccttta cttagctttt
     451  tgtagacaga atcgcaattt gagttatggc ggacgtccgc tagatgcagg
     501  gattccggcc gggtatcatt acctgtgtgc agatttcttg accggagctg
     551  gcttgactga tttagaatgt gctgtgtaca tacaagctaa agaacaattg
     601  ttgaagaagc gaggggctga tgaagtcgta gttaccaatg tcaggcagct
     651  tgggaaattc aacacacgtt ga