Sequence of DPV African cassava mosaic virus
African cassava mosaic virus isolate ACMV-[NG:So:03] segment DNA-A, complete sequence.
ACC No: EU685322
Dated: 2008-12-29 | Length: 2781 | CRC: -496528892
ID EU685322; SV 1; circular; genomic DNA; STD; VRL; 2781 BP.
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AC EU685322;
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DT 29-DEC-2008 (Rel. 98, Created)
DT 29-DEC-2008 (Rel. 98, Last updated, Version 1)
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DE African cassava mosaic virus isolate ACMV-[NG:So:03] segment DNA-A,
DE complete sequence.
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KW .
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OS African cassava mosaic virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2781
RX PUBMED; 18661095.
RA Alabi O.J., Ogbe F.O., Bandyopadhyay R., Lava Kumar P., Dixon A.G.,
RA Hughes J., Naidu R.A.;
RT "Alternate hosts of African cassava mosaic virus and East African cassava
RT mosaic Cameroon virus in Nigeria";
RL Arch. Virol. 153(9):1743-1747(2008).
XX
RN [2]
RP 1-2781
RA Alabi O.J., Ogbe F.O., Bandyopadhyay R., Lava-Kumar P., Dixon A.G.O.,
RA Hughes J., Rayapati N.A.;
RT ;
RL Submitted (05-APR-2008) to the EMBL/GenBank/DDBJ databases.
RL Plant Pathology, Washington State University, 24106 N. Bunn Road, Prosser,
RL WA 99350, USA
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FH Key Location/Qualifiers
FH
FT source 1. .2781
FT /organism="African cassava mosaic virus"
FT /segment="DNA-A"
FT /host="Senna occidentalis"
FT /isolate="ACMV-[NG:So:03]"
FT /mol_type="genomic DNA"
FT /country="Nigeria"
FT /db_xref="taxon:10817"
FT gene 136. .477
FT /gene="AV2"
FT CDS 136. .477
FT /codon_start=1
FT /gene="AV2"
FT /product="pre-coat protein"
FT /protein_id="ACF42197.1"
FT /translation="MWDPLVNEFPDSVHGLRCMLAIKYLQALEDTYEPSTLGHDLVRDL
FT VSVIRARNYVEATRRYHHFHSRLQGSSKAELRQPIQEPCYCPHCPRHKSKTGLDEQAHV
FT QKAHDVQDV"
FT gene complement(274. .639)
FT /gene="AC5"
FT CDS complement(274. .639)
FT /codon_start=1
FT /gene="AC5"
FT /product="unknown"
FT /protein_id="ACF42196.1"
FT /translation="MDLIQNLFPTLCVSPGPRVTSLITLQIPRCFTSSLCSNDWTLHGP
FT SQPLGMSGLLYILYIMGFLYMGLFIQARFRFVTWTVGAVARFLYGLSKFSLRRTLEPGV
FT EMMISPGRFDIITSPDN"
FT gene complement(278. .940)
FT /gene="AC5_4"
FT CDS complement(281. .940)
FT /codon_start=1
FT /gene="AC5_4"
FT /product="unknown"
FT /protein_id="ACF42192.1"
FT /translation="MIICHVMIQPVKPFHQCLLLHARWTTNNSGMKFPQHLKPIPQIVL
FT NCCSTGLIIKHVKYLPKVLGRIAIRPSIPKQVKHHIISVILLLNIFIHPDLPKNVNGLD
FT TKPLSDPVCQPRPTCHITNHLTDTKVLHIIPLLKRLDLTWAFTAPRYVWASIHPVHHGL
FT SVHGPVHPGPFSICDVDSGGSSTVPVWAVEVQPSTNLGAWSGNDDISWSLRHNYEP"
FT gene 296. .1075
FT /gene="AV1"
FT CDS 296. .1072
FT /codon_start=1
FT /gene="AV1"
FT /product="coat protein"
FT /protein_id="ACF42191.1"
FT /translation="MSKRPGDIIISTPGSKVRRRLNFDSPYRNRATAPTVHVTNRKRAW
FT MNRPMYRKPMMYRMYRSPDIPRGCEGPCKVQSFEQRDDVKHLGICKVISDVTRGPGLTH
FT RVGKRFCIKSIYILGKIWMDENIKKQNHTNNVMFYLLRDRRPYGNTPQDFGQIFNMFDN
FT EPSTATIKNDLRDRFQVLRKFHATVIGGPSGMKEQALVKRFYRLNHHVTYNHQEAGKYE
FT NHTENALLLYMACTHASNPVYATLKIRIYFYDSIGN"
FT gene complement(1069. .1473)
FT /gene="AC3"
FT CDS complement(1069. .1473)
FT /codon_start=1
FT /gene="AC3"
FT /product="replication enhancer protein"
FT /protein_id="ACF42195.1"
FT /translation="MDLRTGELITAPQAMNGVYTWEINNPLYFTITRHQQRPFLMNQDI
FT ITVQVRFNHNLRTELGIHKCFLNFRILTTLQPRTGLFLRVFRYQVLKYLDNMGVISIND
FT VIRAADHVLFNVIENTIACQLTHEIKFNVY"
FT gene complement(1214. .1621)
FT /gene="AC2"
FT CDS complement(1214. .1621)
FT /codon_start=1
FT /gene="AC2"
FT /product="transcriptional activator protein"
FT /protein_id="ACF42194.1"
FT /translation="MQSSSPSQNHSTQVPIKVSHRQFKKRAIRRRRVDLVCGCSYYLHI
FT NCSNHGFTHRGTHHCSSSNEWRVYLGNKQSPVFHNHQAPTTTIPDEPGHHNSPGSIQSQ
FT PADGAGDSQMFSQLPDLDDLTASDWSFLKGL"
FT gene complement(1530. .2606)
FT /gene="AC1"
FT CDS complement(1530. .2606)
FT /codon_start=1
FT /gene="AC1"
FT /product="replication protein"
FT /protein_id="ACF42190.1"
FT /translation="MRTPRFRIQAKNVFLTYPKCSIPKEHLLSFIRTLSLPSNPKFIKI
FT CRELHQNGEPHLHALIQFEGKITITNNRLFDCVHPSCSTNFHPNIQGAKSSSDVKSYLD
FT KDGDTIEWGQFQIDGRSARGGQQSANDAYAKALNSGSKSEALNVIRELVPKDFVLQFHN
FT LNSNLDRIFQEPPTPYVSPFPCSSFDQVPDELEEWVADNVRDSAARPWRPNSIVIEGDS
FT RTGKTMWARSLGPHNYLCGHLDLSPKVFNNDAWYNVIDDVDPHYLKHFKEFMGSQRDWQ
FT SNTKYGKPVQIKGGIPTIFLCNPGPTSSYKEFLDEEKQAALKAWALKNAIFITLTEPLY
FT SGSNQSQSQTIQEESHPA"
FT gene complement(2162. .2572)
FT /gene="AC4"
FT CDS complement(2162. .2572)
FT /codon_start=1
FT /gene="AC4"
FT /product="AC4 protein"
FT /note="host activation protein"
FT /protein_id="ACF42193.1"
FT /translation="MSFSHTQNVLYPKNTCCHSFERYLSHPTLSSLKYVESCIRMGNLT
FT CMPSSNSRAKSRLRTIVSSIAYTQAVAPISTPTFKVPNPAPMSSPIWIRTETLSNGDNF
FT RSMDDLLEEVNNQRMMLTPKRLTAAVSQRLLM"
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SQ Sequence 2781 BP; 752 A; 567 C; 687 G; 775 T; 0 other;
eu685322 Length: 2781 29-DEC-2008 Type: N Check: 4105 ..
1 accggttggc cccgcccccc tttaaacgtg gtccccgcgc actacgtatg
51 tcggccaatc atgcggcagc tttaaaggtt atttattagt ggtggaccac
101 tatatactta caggcgaagt tgttgctagt gcgcaatgtg ggatccactg
151 gtgaatgagt ttccagactc ggtgcatggg cttaggtgta tgcttgcaat
201 taaatatttg caggccttag aggatacata cgagcccagt acgttgggcc
251 acgatctggt tagagatcta gtctcagtta tcagggctcg taattatgtc
301 gaagcgacca ggagatatca tcatttccac tccaggctcc aaggttcgtc
351 gaaggctgaa cttcgacagc ccatacagga accgtgctac tgcccccact
401 gtccacgtca caaatcgaaa acgggcctgg atgaacaggc ccatgtacag
451 aaagcccatg atgtacagga tgtatagaag cccagacata cctaggggct
501 gtgaaggccc atgtaaggtc cagtcgtttg agcagaggga tgatgtgaag
551 caccttggta tctgtaaggt gattagtgat gtgacacgtg ggcctgggct
601 gacacacagg gtcggaaaga ggttttgtat caagtccatt tacattcttg
651 ggaagatctg gatggatgaa aatattaaga agcagaatca cactaataat
701 gtgatgtttt acctgcttag ggatagaagg ccttatggca atacgcccca
751 agactttggg cagatattta acatgtttga taatgagccc agtactgcaa
801 caattaagaa cgatttgagg gataggtttc aagtgttgag gaaatttcat
851 gccactgtta ttggtggtcc atctggcatg aaggagcagg cattggtgaa
901 aaggttttac aggttgaatc atcacgtgac atataatcat caggaggcag
951 ggaagtatga gaatcacaca gagaatgctt tgcttctata catggcatgt
1001 acgcatgcct ccaatcctgt atatgctacg ttgaaaatac gtatatactt
1051 ctacgacagt attggcaatt aataaacatt gaattttatt tcatgagtca
1101 actgacacgc aatagtattt tcaattacat tgaacaaaac atgatcagca
1151 gctctaatga catcgttaat ggagataaca cccatattat ccaagtattt
1201 aagtacttgg tatctaaaga cccttaagaa aagaccagtc cgaggctgta
1251 aggtcgtcaa gatccggaag ttgagaaaac atttgtgaat ccccagctcc
1301 gtccgcaggt tgtgattgaa tcgaacctgg actgttatga tgtcctggtt
1351 catcaggaat ggtcgttgtt ggtgcctggt gattgtgaaa tacaggggat
1401 tgtttatttc ccaggtatac acgccattca ttgcttgagg agcagtgatg
1451 agttcccctg tgcgtaaatc catgattgga gcagttgata tggaggtaat
1501 atgaacagcc acagacaaga tccactctcc tacgccggat ggctctcttc
1551 ttgaattgtc tgtgactgac tttgattgga acctgagtag agtggttctg
1601 tgagggtgat gaagattgca ttctttaatg cccaggcctt tagtgctgct
1651 tgcttttcct cgtcgaggaa ctctttatag gacgaggtag gtcctggatt
1701 gcagaggaag atagtgggaa tcccaccttt aatttgaacg ggtttcccgt
1751 acttcgtgtt ggactgccag tccctctggg accccatgaa ttccttaaag
1801 tgctttaggt agtggggatc gacgtcatca atgacgttgt accaggcatc
1851 attattgaag acctttggac taaggtccag gtgtccacac aggtaattgt
1901 gtgggcctaa agatctggcc cacatcgtct tccctgttct gctatcacct
1951 tctatgacaa tactattggg tctccatggc cgcgcagcgg aatcccgaac
2001 attatcagcg acccattctt caagttcatc aggaacttgg tcaaaggaag
2051 aacatgggaa gggagaaaca taaggagttg gtggctcttg gaaaatccta
2101 tctaaattac tatttagatt atgaaactga agtacaaagt cctttgggac
2151 taattcccta attacattaa gagcctctga cttactgccg ctgttaagcg
2201 ctttggcgta agcatcattc gctgattgtt gacctcctct agcagatcgt
2251 ccatcgatct gaaattgtcc ccattcgata gtgtctccgt ccttatccag
2301 ataggacttg acatcggagc tggatttggc accttgaatg ttggggtgga
2351 aattggtgct acagcttggg tgtacgcaat cgaagagacg attgttcgta
2401 atcgtgattt tgccctcgaa ttggatgagg gcatgcaagt gaggttcccc
2451 attctgatgc agctctctac atattttaat gaacttaggg ttggatggga
2501 gagatagcgt tcgaatgaat gacagcaggt gttctttggg tatagaacat
2551 tttgggtatg tgagaaagac attcttggct tgaattctaa aacgcggagt
2601 ccgcatattg accaagtcaa ttagagacac tcaactggag acacccttga
2651 gcatctcctc ctattaattg gagacaatat atagttgtct ccaaatggca
2701 ttcgtgtaat aagtggaact ttaatttgaa tgaaaaggct caagaggcgc
2751 ggaacaccca aggggccaac cgtataatat t