Sequence of DPV Tomato yellow leaf curl virus
TYLCAxV-Sic1-[IT:Sic2/2:04], complete genome.
ACC No: EU734831
Dated: 2010-11-09 | Length: 2771 | CRC: 1479661048
ID EU734831; SV 1; circular; genomic DNA; STD; VRL; 2771 BP.
XX
AC EU734831;
XX
DT 23-JUN-2008 (Rel. 96, Created)
DT 09-NOV-2010 (Rel. 106, Last updated, Version 3)
XX
DE TYLCAxV-Sic1-[IT:Sic2/2:04], complete genome.
XX
KW .
XX
OS TYLCAxV-Sic1-[IT:Sic2/2:04]
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
XX
RN [1]
RP 1-2771
RX DOI; 10.1016/j.virusres.2009.03.001.
RX PUBMED; 19463717.
RA Davino S., Napoli C., Dellacroce C., Miozzi L., Noris E., Davino M.,
RA Accotto G.P.;
RT "Two new natural begomovirus recombinants associated with the tomato yellow
RT leaf curl disease co-exist with parental viruses in tomato epidemics in
RT Italy";
RL Virus Res. 143(1):15-23(2009).
XX
RN [2]
RP 1-2771
RA Davino S., Dellacroce C., Miozzi L., Napoli C., Accotto G.P.;
RT ;
RL Submitted (20-MAY-2008) to the EMBL/GenBank/DDBJ databases.
RL Istituto di Virologia Vegetale, Consiglio Nazionale delle Ricerche, Strada
RL delle Cacce 73, Torino 10135, Italy
XX
FH Key Location/Qualifiers
FH
FT source 1. .2771
FT /organism="TYLCAxV-Sic1-[IT:Sic2/2:04]"
FT /host="Solanum lycopersicum"
FT /isolate="IT:R-2-2"
FT /mol_type="genomic DNA"
FT /country="Italy:Sicily, Ragusa"
FT /collection_date="2004"
FT /db_xref="taxon:604276"
FT gene 148. .495
FT /gene="V2"
FT CDS 148. .495
FT /codon_start=1
FT /gene="V2"
FT /product="precoat protein"
FT /db_xref="GOA:B3VDH1"
FT /db_xref="InterPro:IPR002511"
FT /db_xref="InterPro:IPR005159"
FT /db_xref="UniProtKB/TrEMBL:B3VDH1"
FT /protein_id="ACE82188.1"
FT /translation="MWDPLLNEFPDSVHGLRCMLAIKYLQLVEETYEPNTLGHDLIRDL
FT ISVIRARDYAEANRRYTNFNARLEGSSKTELRQPVYQPCCCPHCPRHQASIMDLQAHVS
FT KAADVQNVQKP"
FT gene 308. .1081
FT /gene="V1"
FT CDS 308. .1081
FT /codon_start=1
FT /gene="V1"
FT /product="coat protein"
FT /note="CP"
FT /db_xref="GOA:B3VDH2"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProtKB/TrEMBL:B3VDH2"
FT /protein_id="ACE82189.1"
FT /translation="MPKRTGDILISTPVSKVRRRLNFDSPYTSRAAAPTVQGIKRRSWT
FT YRPMYRKPRMYRMYRSPDVPPGCEGPCKVQSYEQRDDVKHTGVVRCVSDVTRGSGITHR
FT VGKRFCIKSIYILGKIWMDENIKKQNHTNQVMFFLVRDRRPYGTSPMDFGQVFNMFDNE
FT PSTATVKNDLRDRYQVMRKFHATVVGGPSGMKEQCLLKRFFKINTHVVYNHQEQAKYEN
FT HTENALLLYMACTHASNPVYATLKIRIYFYDAVTN"
FT gene complement(1078. .1482)
FT /gene="C3"
FT CDS complement(1078. .1482)
FT /codon_start=1
FT /gene="C3"
FT /product="REn protein"
FT /note="replication enhancer protein"
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProtKB/TrEMBL:B3VDH3"
FT /protein_id="ACE82190.1"
FT /translation="MDLRTGEYITALQATSGVYTFGITNPLYFKITKHNQNPFNNKYNT
FT LIFQIRFNHNLRKELGIHKCFLNFRIWTTLQSPTGHFLRVFKYQVCKYLNNLGVISLNN
FT VIRAVDYVLYDVFEGTIDVAENHEIKFNLY"
FT gene complement(1223. .1630)
FT /gene="C2"
FT CDS complement(1223. .1630)
FT /codon_start=1
FT /gene="C2"
FT /product="TrAP protein"
FT /note="transcriptional activator protein"
FT /db_xref="GOA:B3VDH4"
FT /db_xref="InterPro:IPR000942"
FT /db_xref="UniProtKB/TrEMBL:B3VDH4"
FT /protein_id="ACE82191.1"
FT /translation="MRSSSPSTSHCSQIPIKIQHHIAKKRQVRRRRVDLDCGCSYYIHL
FT DCINHGFTHRGVHHCASSNEWRLYLRDNKSPIFQDNQTQSEPIQQQVQHTNIPNQIQPQ
FT FEEGTGDSQMFSQLPHLDDFTVSDWSFFKSI"
FT gene complement(1539. .2612)
FT /gene="C1"
FT CDS complement(1539. .2612)
FT /codon_start=1
FT /gene="C1"
FT /product="Rep protein"
FT /note="replication-associated protein"
FT /db_xref="GOA:B3VDH5"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="InterPro:IPR022690"
FT /db_xref="InterPro:IPR022692"
FT /db_xref="UniProtKB/TrEMBL:B3VDH5"
FT /protein_id="ACE82192.1"
FT /translation="MPRLFKIYAKNYFLTYPNCYLSKEEALSQLKNLETPTNKKYIKVC
FT REFHENGEPHLHVLIQFEGKYQCKNQRFFDLVSPNRSAHFHPNIQAAKSSTDVKTYVEK
FT DGEFIDFGVFQIDGRSARGGQQSANDAYAEALNSGSKSEALNILKEKAPKDYILQFHNL
FT SSNLDRIFSPPLEVYVSPFLSSSFNQVPDELEEWVAENVMDAAARPWRPVSIVIEGDSR
FT TGKTMWARSLGPHNYLCGHLDLSQKVYSNNAWYNVIDDVDPHYLKHFKEFMGAQRDWQS
FT NTKYGKPIQIKGGIPTIFLCNPGPQSSFKEYLDEEKNQPLKNWAIKNAIFVTIHQPLFT
FT DTHQNTTPHRQEEAGEA"
FT gene complement(2168. .2461)
FT /gene="C4"
FT CDS complement(2168. .2461)
FT /codon_start=1
FT /gene="C4"
FT /product="C4 protein"
FT /db_xref="InterPro:IPR002488"
FT /db_xref="UniProtKB/TrEMBL:B3VDH6"
FT /protein_id="ACE82193.1"
FT /translation="MGNHISMCLSNSKANTNVKTNGSSTWYPQTGQHISIRTFRQLRAQ
FT QMSRPTWRKTENSLILEFSKSMADQLEEVSNLPTTHMPKHSIQAVNPRPSIY"
XX
SQ Sequence 2771 BP; 771 A; 527 C; 586 G; 887 T; 0 other;
eu734831 Length: 2771 09-NOV-2010 Type: N Check: 5432 ..
1 taatattacc ggatggccgc gctccccgat aaagaagtgg gtcctacgca
51 gtaatttctg tcgaccaatg aaattccagc ctcaaagctt aaataattgt
101 ttagctttct tataaacttg ctcactaagt tttaaaaata ccacaaaatg
151 tgggatccat tattaaatga atttcctgat tctgtccatg gtctccgatg
201 catgctcgca attaaatatt tgcagctagt tgaagaaacc tacgaaccta
251 atacccttgg tcacgaccta attagggatc tcatctccgt cattcgtgct
301 cgtgactatg ccgaagcgaa ccggcgatat actaatttca acgcccgtct
351 cgaaggttcg tcgaagactg aacttcgaca gcccgtatac cagccgtgct
401 gctgccccca ctgtccaagg catcaagcgt cgatcatgga cttacaggcc
451 catgtatcga aagccgcgga tgtacagaat gtacagaagc cctgatgtac
501 ctccgggttg tgaaggtccc tgtaaagttc agtcctatga gcagcgtgat
551 gacgtcaagc ataccggtgt tgtgcgttgt gttagtgatg ttactagggg
601 ttctggtatt actcatagag ttggtaaacg tttttgtatt aagtcaattt
651 atattttagg gaagatttgg atggatgaaa atataaaaaa acaaaatcat
701 actaaccagg ttatgttttt ccttgttcga gaccgaaggc cttatggaac
751 tagtcctatg gattttggtc aagtttttaa catgtttgat aatgaaccca
801 gtactgctac ggtgaagaac gacttaaggg ataggtatca agtaatgagg
851 aagtttcatg ctacggttgt tggaggtccg tcagggatga aggagcagtg
901 tttgctgaag agatttttta aaattaatac ccatgtagtt tataatcatc
951 aagagcaggc gaagtatgag aatcatactg agaatgcctt gttattgtat
1001 atggcttgta ctcatgcttc taacccagtg tacgctacat tgaaaatacg
1051 tatttatttt tatgatgctg taacaaatta ataaagatta aattttattt
1101 catgattttc agctacatca attgttcctt caaatacatc atacaataca
1151 taatcaactg ctctaataac attatttaaa gaaattacac ccaaattatt
1201 caaatattta caaacttgat atttaaatac tcttaaaaaa tgaccagtcg
1251 gagactgtaa agtcgtccaa atgcggaagt tgagaaaaca tttgtgaatc
1301 cccagttcct tcctcaaatt gtggttgaat ctgatttgga atattagtgt
1351 gttgtacttg ttgttgaatg ggttctgatt gtgtttggtt atcttgaaat
1401 ataggggatt tgttatcccg aaggtataaa cgccactcgt tgcttgaagc
1451 gcagtgatgt actcccctgt gcgtaaatcc atgatttatg cagtctaagt
1501 gtatgtaata tgagcatcca cagtccagat cgacccttct acgcctcacc
1551 tgcctcttct tggcgatgtg gtgttgtatt ttgatgggta tctgtgaaca
1601 atggctggtg gatggtgacg aagatcgcat tcttaatagc ccaatttttt
1651 aatggttggt ttttttcttc gtcgagatat tctttaaatg atgattgtgg
1701 gcctggattg cagaggaaga tagtgggaat gcctccttta atttgaatgg
1751 gcttcccata cttggtgttg ctctgccagt ctctttgggc ccccataaac
1801 tctttaaagt gctttaaata atgcgggtcg acgtcatcaa tgacgttata
1851 ccaagcatta ttgctgtata ctttttgact gaggtcaaga tggccgcaca
1901 aataattatg tgggcctaag gaacgggccc acatggtctt tcctgtccgg
1951 ctgtcaccct caatcactat acttaccggt ctccaaggcc gcgcagcggc
2001 atccatgacg ttctcggcga cccactcttc aagttcatct ggaacttgat
2051 taaaagaaga agaaagaaat ggagaaacat aaacttctaa aggaggacta
2101 aaaatcctat ctaaatttga acttaaatta tgaaattgta aaatatagtc
2151 ctttggggcc ttctctttta atatattgag ggcctcggat ttactgcctg
2201 aattgagtgc ttcggcatat gcgtcgttgg cagattgctg acctcctcta
2251 gctgatctgc catcgatttg gaaaactcca aaatcaatga attctccgtc
2301 tttctccacg taggtcttga catctgttga gctcttagct gcctgaatgt
2351 tcggatggaa atgtgctgac ctgtttgggg ataccaggtc gaagaaccgt
2401 tggtttttac attggtattt gccttcgaat tggataagca catggagatg
2451 tggttcccca ttctcgtgga attctctgca aactttgatg tattttttat
2501 ttgttggggt ttctaggttt tttaattggg aaagtgcttc ctctttagag
2551 agataacaat tgggatatgt caggaaataa tttttggcat atattttaaa
2601 taaacgaggc atgttgaaat gaatcggtgt ccctcacagc tctatggcaa
2651 tcggtgtatt ggtgtcttac ttatacctgg acacctaatg gctatatggt
2701 aatttaataa atgtttattg caattcaaaa ttcaaacttc aaaaatcaaa
2751 tcattaaagc ggccatccgt a