Sequence of DPV Tomato yellow leaf curl virus
TYLCAxV-Sic2-[IT:Sic2/5:04], complete genome.
ACC No: EU734832
Dated: 2010-11-09 | Length: 2771 | CRC: -1562755803
ID EU734832; SV 1; circular; genomic DNA; STD; VRL; 2771 BP.
XX
AC EU734832;
XX
DT 23-JUN-2008 (Rel. 96, Created)
DT 09-NOV-2010 (Rel. 106, Last updated, Version 3)
XX
DE TYLCAxV-Sic2-[IT:Sic2/5:04], complete genome.
XX
KW .
XX
OS TYLCAxV-Sic2-[IT:Sic2/5:04]
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
XX
RN [1]
RP 1-2771
RX DOI; 10.1016/j.virusres.2009.03.001.
RX PUBMED; 19463717.
RA Davino S., Napoli C., Dellacroce C., Miozzi L., Noris E., Davino M.,
RA Accotto G.P.;
RT "Two new natural begomovirus recombinants associated with the tomato yellow
RT leaf curl disease co-exist with parental viruses in tomato epidemics in
RT Italy";
RL Virus Res. 143(1):15-23(2009).
XX
RN [2]
RP 1-2771
RA Davino S., Dellacroce C., Miozzi L., Napoli C., Accotto G.P.;
RT ;
RL Submitted (20-MAY-2008) to the EMBL/GenBank/DDBJ databases.
RL Istituto di Virologia Vegetale, Consiglio Nazionale delle Ricerche, Strada
RL delle Cacce 73, Torino 10135, Italy
XX
FH Key Location/Qualifiers
FH
FT source 1. .2771
FT /organism="TYLCAxV-Sic2-[IT:Sic2/5:04]"
FT /host="Solanum lycopersicum"
FT /isolate="IT:R-2-5"
FT /mol_type="genomic DNA"
FT /country="Italy:Sicily, Ragusa"
FT /collection_date="2004"
FT /db_xref="taxon:604277"
FT gene 148. .495
FT /gene="V2"
FT CDS 148. .495
FT /codon_start=1
FT /gene="V2"
FT /product="precoat protein"
FT /db_xref="GOA:B3VDH7"
FT /db_xref="InterPro:IPR002511"
FT /db_xref="InterPro:IPR005159"
FT /db_xref="UniProtKB/TrEMBL:B3VDH7"
FT /protein_id="ACE82194.1"
FT /translation="MWDPLLNEFPDSVHGLRCMLAIKYLQLVEETYEPNTLGHDLIRDL
FT ISVIRARDYAEANRRYTNFNARLEGSSKTELRQPVYQPCCCPHCPRHQASIMDLQAHVS
FT KAADVQNVQKP"
FT gene 308. .1081
FT /gene="V1"
FT CDS 308. .1081
FT /codon_start=1
FT /gene="V1"
FT /product="coat protein"
FT /note="CP"
FT /db_xref="GOA:B3VDH8"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProtKB/TrEMBL:B3VDH8"
FT /protein_id="ACE82195.1"
FT /translation="MPKRTGDILISTPVSKVRRRLNFDSPYTSRAAAPTVQGIKRRSWT
FT YRPMYRKPRMYRMYRSPDVPPGCEGLCKVQSYEQRDDVKHTGVVRCVSDVTRGSGITHR
FT VGKRFCIKSIYILGKIWMDENIKKQNHTNQVMFFLVRDRRPYGTSPMDFGQVFNMFDNE
FT PSTATVKNDLRDRYQVMRKFHATVVGGPSGMKEQCLLKRFFKINTHVVYNHQEQAKYEN
FT HTENALLLYMACTHASNPVYATLKIRIYFYDSISN"
FT gene complement(1078. .1482)
FT /gene="C3"
FT CDS complement(1078. .1482)
FT /codon_start=1
FT /gene="C3"
FT /product="REn protein"
FT /note="replication enhancer protein"
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProtKB/TrEMBL:B3VDH9"
FT /protein_id="ACE82196.1"
FT /translation="MDSRTGELITAPQAENGVFIWEINNPLYFKITEHSQRPFLMNHDI
FT ISIQIRFNHNIRKVLGIHKCFLNFRIWTTLQPQNGRFLRVFRYEVLKYLDSLGVISINN
FT VIRAVDHVLYDVLENTINVTEAHDIKYKCY"
FT gene complement(1223. .1630)
FT /gene="C2"
FT CDS complement(1223. .1630)
FT /codon_start=1
FT /gene="C2"
FT /product="TrAP protein"
FT /note="transcriptional activator protein"
FT /db_xref="GOA:B3VDI0"
FT /db_xref="InterPro:IPR000942"
FT /db_xref="UniProtKB/TrEMBL:B3VDI0"
FT /protein_id="ACE82197.1"
FT /translation="MQHSSPSTSHCSQVSIKVQHKIAKKKPIRRKRVDLDCGCSYYLHL
FT NCNNHGFTHRGTHHCSSGREWRFYLGDKQSPLFQDNRTQPAAISNEPRHHFHSDKIQPQ
FT HQEGIGDSQMFSQLPNLDDITASEWSFLKSI"
FT gene complement(1539. .2612)
FT /gene="C1"
FT CDS complement(1539. .2612)
FT /codon_start=1
FT /gene="C1"
FT /product="Rep protein"
FT /note="replication-associated protein"
FT /db_xref="GOA:B3VDI1"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="InterPro:IPR022690"
FT /db_xref="InterPro:IPR022692"
FT /db_xref="UniProtKB/TrEMBL:B3VDI1"
FT /protein_id="ACE82198.1"
FT /translation="MPRLFKIYAKNYFLTYPNCYLSKEEALSQLKNLETPTNKKYIKVC
FT REFHENGEPHLHVLIQFEGKYQCKNQRFFDLVSPNRSAHFHPNIQAAKSSTDVKTYVEK
FT DGEFIDFGVFQIDGRSARGGQQSANDAYAEALNSGSKSEALNILKEKAPKDYILQFHNL
FT SSNLDRIFSPPLEVYVSPFLSSSFNQVPDELEEWVAENVVSSAARPWRPISIVIEGDSR
FT TGKTMWARSLGPHNYLCGHLDLSPKVYNNDVWYNVIDDVDPHYLKHFKEFMGAQRDWQS
FT NTKYGKPIQIKGGIPTIFLCNPGPTSSYREYLDEEKNISLKNWALKNATFVTLYEPLFA
FT SINQGPTQDSQEETNKA"
FT gene complement(2168. .2461)
FT /gene="C4"
FT CDS complement(2168. .2461)
FT /codon_start=1
FT /gene="C4"
FT /product="C4 protein"
FT /db_xref="InterPro:IPR002488"
FT /db_xref="UniProtKB/TrEMBL:B3VDI2"
FT /protein_id="ACE82199.1"
FT /translation="MGNHISMCLSNSKANTNVKTNGSSTWYPQTGQHISIRTFRQLRAQ
FT QMSRPTWRKTENSLILEFSKSMADQLEEVSNLPTTHMPKHSIQAVNPRPSIY"
XX
SQ Sequence 2771 BP; 761 A; 532 C; 594 G; 884 T; 0 other;
eu734832 Length: 2771 09-NOV-2010 Type: N Check: 2435 ..
1 taatattacc ggatggccgc gctccccgat aaagaagtgg gtcctacgca
51 gtaatttctg tcgaccaatg aaattccagc ctcaaagctt aaataattgt
101 ttagctttct tataaacttg ctcactaagt tttaaaaata ccacaaaatg
151 tgggatccat tattaaatga atttcctgat tctgtccatg gtctccgatg
201 catgctcgca attaaatatt tgcagctagt tgaagaaacc tacgaaccta
251 atacccttgg tcacgaccta attagggatc tcatctccgt cattcgtgct
301 cgtgactatg ccgaagcgaa ccggcgatat actaatttca acgcccgtct
351 cgaaggttcg tcgaagactg aacttcgaca gcccgtatac cagccgtgct
401 gctgccccca ctgtccaagg catcaagcgt cgatcatgga cttacaggcc
451 catgtatcga aagccgcgga tgtacagaat gtacagaagc cctgatgtac
501 ctccgggttg tgaaggtctc tgtaaagttc agtcctatga gcagcgtgat
551 gacgtcaagc ataccggtgt tgtgcgttgt gttagtgatg ttactagggg
601 ttctggtatt actcatagag ttggtaaacg tttttgtatt aagtcaattt
651 atattttagg gaagatttgg atggatgaaa atataaaaaa acaaaatcat
701 actaaccagg ttatgttttt ccttgttcga gaccgaaggc cttatggaac
751 tagtcctatg gattttggtc aagtttttaa catgtttgat aatgaaccca
801 gtactgctac ggtgaagaac gacttaaggg ataggtatca agtaatgagg
851 aagtttcatg ctacggttgt tggaggtccg tcagggatga aggagcagtg
901 tttgctgaag agatttttta aaattaatac ccatgtagtt tataatcatc
951 aagagcaggc gaagtatgag aatcatactg agaatgcctt gttattgtat
1001 atggcttgta ctcatgcttc taacccagtg tacgctacat tgaaaatacg
1051 tatttatttc tatgattcaa tatcaaatta ataacattta tattttatat
1101 catgagcttc tgttacattt attgtgtttt caagtacatc atacaataca
1151 tgatcaactg ctctgattac attgttaatg gaaattacac caagactatc
1201 taaatactta agaacttcat atctaaatac tcttaagaaa cgaccattct
1251 gaggctgtaa tgtcgtccaa attcggaagt tgagaaaaca tttgtgaatc
1301 cccaatacct tcctgatgtt gtggttgaat cttatctgaa tggaaatgat
1351 gtcgtggttc attagaaatg gccgctggct gtgttctgtt atcttgaaat
1401 agaggggatt gtttatctcc cagataaaaa cgccattctc tgcctgagga
1451 gcagtgatga gttcccctgt gcgtgaatcc atgattgttg cagttgaggt
1501 ggaggtagta tgagcagcca cagtctaggt ctacacgctt acgccttatt
1551 ggtttcttct tggctatctt gtgttggacc ttgattgata cttgcgaaca
1601 gtggctcgta gagggtgacg aatgttgcat tcttgagagc ccaatttttc
1651 aaggatatgt ttttttcttc atctagatat tccctatatg aggaggtagg
1701 tcctggattg cagaggaaga tagtgggaat tcccccttta atttgaatgg
1751 gcttcccgta ctttgtgttg ctttgccagt ccctctgggc ccccatgaat
1801 tccttgaagt gctttaaata atgcgggtct acgtcatcaa tgacgttgta
1851 ccacacatcg ttattgtaca cctttgggct taggtctaga tgtccacata
1901 aataattatg tggacccaga gacctggccc acattgtctt gcccgttctg
1951 ctatcaccct caatgacaat acttatgggt ctccatggcc gcgcagcgga
2001 agatacgacg ttctcggcga cccactcttc aagttcatct ggaacttgat
2051 taaaagaaga agaaagaaat ggagaaacat aaacttctaa aggaggacta
2101 aaaatcctat ctaaatttga acttaaatta tgaaattgta aaatatagtc
2151 ctttggggcc ttctctttta atatattgag ggcctcggat ttactgcctg
2201 aattgagtgc ttcggcatat gcgtcgttgg cagattgctg acctcctcta
2251 gctgatctgc catcgatttg gaaaactcca aaatcaatga attctccgtc
2301 tttctccacg taggtcttga catctgttga gctcttagct gcctgaatgt
2351 tcggatggaa atgtgctgac ctgtttgggg ataccaggtc gaagaaccgt
2401 tggtttttac attggtattt gccttcgaat tggataagca catggagatg
2451 tggttcccca ttctcgtgga attctctgca aactttgatg tattttttat
2501 ttgttggggt ttctaggttt tttaattggg aaagtgcttc ctctttagag
2551 agataacaat tgggatatgt caggaaataa tttttggcat atattttaaa
2601 taaacgaggc atgttgaaat gaatcggtgt ccctcaaagc tctatggcaa
2651 tcggtgtatt ggtgtcttac ttatacctgg acacctaatg gctatatggt
2701 aatttaataa atgtttattg caattcaaaa ttcaaacttc aaaaatcaaa
2751 tcattaaagc ggccatccgt a