Sequence of DPV Pelargonium line pattern virus
Pelargonium line pattern virus isolate SPA1 clone 1 putative movement protein (p7), putative movement protein (p9), and coat protein (CP) genes, complete cds.
ACC No: EU852914
Dated: 2011-01-28 | Length: 1817 | CRC: -1042785291
ID EU852914; SV 1; linear; genomic RNA; STD; VRL; 1817 BP. XX AC EU852914; XX DT 01-JUL-2009 (Rel. 101, Created) DT 28-JAN-2011 (Rel. 107, Last updated, Version 2) XX DE Pelargonium line pattern virus isolate SPA1 clone 1 putative movement DE protein (p7), putative movement protein (p9), and coat protein (CP) genes, DE complete cds. XX KW . XX OS Pelargonium line pattern virus OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae. XX RN [1] RP 1-1817 RX PUBMED; 20979982. RA Castano A., Ruiz L., Elena S.F., Hernandez C.; RT "Population differentiation and selective constraints in Pelargonium line RT pattern virus"; RL Virus Res. 155(1):274-282(2011). XX RN [2] RP 1-1817 RA Castano A., Ruiz L., Hernandez C.; RT "Sequence variability of distinct isolates of Pelargonium line pattern RT virus"; RL Unpublished. XX RN [3] RP 1-1817 RA Castano A., Ruiz L., Hernandez C.; RT ; RL Submitted (26-JUN-2008) to the EMBL/GenBank/DDBJ databases. RL Instituto de Biologia Molecular y Celular de Plantas, Ingeniero Fausto Elio RL s/n, Valencia, Valencia 46022, Spain XX FH Key Location/Qualifiers FH FT source 1. .1817 FT /organism="Pelargonium line pattern virus" FT /host="Pelargonium zonale" FT /lab_host="Chenopodium quinoa" FT /isolate="SPA1" FT /mol_type="genomic RNA" FT /country="Spain" FT /clone="1" FT /db_xref="taxon:167019" FT gene 208. .399 FT /gene="p7" FT CDS 208. .399 FT /codon_start=1 FT /gene="p7" FT /product="putative movement protein" FT /db_xref="GOA:C6F3J9" FT /db_xref="InterPro:IPR007982" FT /db_xref="UniProtKB/TrEMBL:C6F3J9" FT /protein_id="ACJ38442.1" FT /translation="MDIQPKDTNLSVKEAGKSAKRGSTKNKLDIAHSGVSKGTSRDLVG FT ANFVTVADKVEFVVHLHF" FT gene 305. .571 FT /gene="p9" FT CDS 305. .571 FT /codon_start=1 FT /transl_except=(pos:305. .307,aa:Met) FT /gene="p9" FT /product="putative movement protein" FT /note="non-canonical start codon" FT /db_xref="UniProtKB/TrEMBL:C6F3K0" FT /protein_id="ACJ38443.1" FT /translation="MEYPRVHLAILSVLILSQLLIKWNLWYISISSFLPQPHLLHPNLL FT VCIVLCIFFSSVLSQGQSYSYSYISTSTSDKFISVAVGNGGQG" FT gene 555. .1571 FT /gene="CP" FT CDS 555. .1571 FT /codon_start=1 FT /gene="CP" FT /product="coat protein" FT /db_xref="GOA:C6F3K1" FT /db_xref="InterPro:IPR000937" FT /db_xref="UniProtKB/TrEMBL:C6F3K1" FT /protein_id="ACJ38444.1" FT /translation="MAAKDNPAVLAAAARREQWAIKLQSKGWGSLSKAQKATARSYGIG FT NPPTVVVPRTTRLVAGNPMNARRARGEPGNAKMGTTITKQEYMGELHSSSRIETYLLDP FT KNVRSFPQLSGLAIGYNKYKITDFKVRYSPKCSDSECGLTIAYSSDSSDPPPKNKFNLF FT SMNHKYETAAHKPLLVTLPVSKETRFLRDKCTDDSKLVDSGAVHVLVDGNHEGRLGELF FT FELTIVFSEPTFCNHHSQVIKGLKESEGPEYVKLEPDKETVKLVFQAAGAYLISIVASK FT LERIGQLGASEGDKLVVESADKSACLCRIEAEQPGSAVVLVYASREAITLRAYINKL" XX SQ Sequence 1817 BP; 479 A; 448 C; 473 G; 417 T; 0 other; eu852914 Length: 1817 28-JAN-2011 Type: N Check: 131 .. 1 gaaaatggcc ttctacgggg actactattg gaagtgggtc aaccagcata 51 acggcaagta tgaaccggtg accgaggaag ctcgacactc attccacttg 101 gcgtttgggg ttagccctga ccaacagttg gccttagagg ctatatacgc 151 tcacaagtcg ctactttggg agtcctcccc ctttacattt gaagttggcg 201 ctatcgaatg gatattcaac caaaagatac caatctgagt gtaaaggaag 251 cagggaaatc agcaaagcgc ggaagtacaa agaacaagct agacatagcg 301 cacagtggag tatccaaggg tacatctcgc gatcttgtcg gtgctaattt 351 tgtcacagtt gctgataaag tggaatttgt ggtacatctc catttctagt 401 ttcttaccac agccacactt gttgcaccct aatctgcttg tctgcattgt 451 gttgtgcatc ttcttcagtt cagttcttag ccagggacag agttatagtt 501 atagttacat ttcaactagc accagcgata aattcatctc agtagctgta 551 ggaaatggcg gccaaggata atccggcggt cctcgccgcc gcggcgaggc 601 gggaacaatg ggcaatcaag ctccaatcca agggttgggg ctctctgtca 651 aaggcccaga aagccaccgc tcgctcgtac gggataggga atcctccgac 701 agtcgtggtg cctcgcacta cccggctggt ggctggaaac cccatgaacg 751 cgcggcgggc gcggggagag cctggtaatg ccaaaatggg caccaccata 801 accaagcaag aatacatggg cgagcttcat tcttcttcaa ggattgaaac 851 ttacttgctc gaccccaaga atgtgaggag cttccctcag ttaagcgggc 901 ttgcaatcgg ctacaacaag tacaagatta ctgacttcaa ggtgcggtac 951 agccctaaat gtagcgacag tgagtgtggg ttaaccatag cttactccag 1001 cgactcttca gacccaccgc cgaagaacaa attcaacttg tttagcatga 1051 accacaagta cgaaacagcc gcgcacaagc cactcctagt aacacttccc 1101 gtgtccaaag agaccagatt cttgcgggat aagtgtactg atgattccaa 1151 gctcgtagac agtggggcgg tgcatgtcct ggtggacggg aatcacgagg 1201 gcaggctcgg agagcttttc ttcgagttga ccatcgtgtt ttctgaacca 1251 accttttgca atcaccactc ccaagtcatc aagggactca aagagagtga 1301 aggacccgaa tatgttaaac ttgagcctga caaggaaacc gtgaaactgg 1351 ttttccaggc agcgggggcg tacttaattt ctatagtagc ctccaagcta 1401 gagcgaatcg ggcagcttgg tgcttctgaa ggtgacaagc tggtagttga 1451 aagtgctgat aagagtgcct gcctctgtag aatagaggcg gagcaacccg 1501 gtagtgctgt agtattagtt tatgccagca gggaggccat taccctgcga 1551 gcttacatca acaagctatg aggaaagcca ctgcggtggg gtcagtctcc 1601 tggtgcgcca acacccagaa ggggagacaa cttcagtggt tgataacccg 1651 atgcttagcg taagcctaga aaaacccaaa aacagagtgt tactgctttc 1701 agcgtgcgag ctttatttgc tcacttcctc cgtcgataaa atcccgattt 1751 ttcgggtggg cttcggcgga catccttaat gaagaacggg ggggtaaccc 1801 acccccctga tctgccc