Sequence of DPV Pelargonium line pattern virus
Pelargonium line pattern virus isolate ITA2 clone 2 putative movement protein (p7), putative movement protein (p9), and coat protein (CP) genes, complete cds.
ACC No: EU852926
Dated: 2011-01-28 | Length: 1817 | CRC: -117448274
ID EU852926; SV 1; linear; genomic RNA; STD; VRL; 1817 BP.
XX
AC EU852926;
XX
DT 01-JUL-2009 (Rel. 101, Created)
DT 28-JAN-2011 (Rel. 107, Last updated, Version 2)
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DE Pelargonium line pattern virus isolate ITA2 clone 2 putative movement
DE protein (p7), putative movement protein (p9), and coat protein (CP) genes,
DE complete cds.
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KW .
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OS Pelargonium line pattern virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae.
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RN [1]
RP 1-1817
RX PUBMED; 20979982.
RA Castano A., Ruiz L., Elena S.F., Hernandez C.;
RT "Population differentiation and selective constraints in Pelargonium line
RT pattern virus";
RL Virus Res. 155(1):274-282(2011).
XX
RN [2]
RP 1-1817
RA Castano A., Ruiz L., Hernandez C.;
RT "Sequence variability of distinct isolates of Pelargonium line pattern
RT virus";
RL Unpublished.
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RN [3]
RP 1-1817
RA Castano A., Ruiz L., Hernandez C.;
RT ;
RL Submitted (26-JUN-2008) to the EMBL/GenBank/DDBJ databases.
RL Instituto de Biologia Molecular y Celular de Plantas, Ingeniero Fausto Elio
RL s/n, Valencia, Valencia 46022, Spain
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FH Key Location/Qualifiers
FH
FT source 1. .1817
FT /organism="Pelargonium line pattern virus"
FT /host="Pelargonium zonale"
FT /lab_host="Chenopodium quinoa"
FT /isolate="ITA2"
FT /mol_type="genomic RNA"
FT /country="Italy"
FT /clone="2"
FT /db_xref="taxon:167019"
FT gene 208. .399
FT /gene="p7"
FT CDS 208. .399
FT /codon_start=1
FT /gene="p7"
FT /product="putative movement protein"
FT /db_xref="GOA:C6F3N2"
FT /db_xref="InterPro:IPR007982"
FT /db_xref="UniProtKB/TrEMBL:C6F3N2"
FT /protein_id="ACJ38478.1"
FT /translation="MDIQSKDSNLIVKEAGKSAKRGSTKNKLDVAHSGVSKGTSRDIVG
FT ANFVTVADKVEFVVHLNF"
FT gene 305. .571
FT /gene="p9"
FT CDS 305. .571
FT /codon_start=1
FT /transl_except=(pos:305. .307,aa:Met)
FT /gene="p9"
FT /product="putative movement protein"
FT /note="non-canonical start codon"
FT /db_xref="UniProtKB/TrEMBL:C6F3N3"
FT /protein_id="ACJ38479.1"
FT /translation="MEYPRVHLVTLSVLILSQLLIKWSLWSISISDFLPQPHLLHPNLL
FT VCIVLCIFFSSVLSQGQSYSYSYFSTSTSDKFISVAVGNGGQR"
FT gene 555. .1571
FT /gene="CP"
FT CDS 555. .1571
FT /codon_start=1
FT /gene="CP"
FT /product="coat protein"
FT /db_xref="GOA:C6F3N4"
FT /db_xref="InterPro:IPR000937"
FT /db_xref="UniProtKB/TrEMBL:C6F3N4"
FT /protein_id="ACJ38480.1"
FT /translation="MAAKDNPAVIAAVARREQWAIKLQSKGWGSLSKAQKATARSYGIG
FT NPPTVVVPRTTRLVAGNPTNARRARGEPGNAKMGTTITKQEYMGELHSSSKIETYLLDP
FT KNVRSFPQLSGLAIGYNKYKITDFKVRYSPKCSDSECGLTIAYSSDSSDPPPKNKFNLF
FT SMNHKYETAAHKPLLVTLPVSKETRFLRDKCTDDSKLVDSGAVHVLVDGKHEGRIGELF
FT FELTIVFSEPTFCNHHSQVIKGLKESEGPEYVKVEPDKESVKLVFQAAGAYLISIVASK
FT LERIGQLGASEGDKLVVESTDKSACLCRIEAEQPGSAVVLVYASREAITLRAYINKL"
XX
SQ Sequence 1817 BP; 487 A; 440 C; 462 G; 428 T; 0 other;
eu852926 Length: 1817 28-JAN-2011 Type: N Check: 6923 ..
1 gaaaatggcc ttctacgggg actactattg gaagtgggtc aaccagcata
51 acggcaagta tgaaccggtg accgaggaag ctaggcactc attccacttg
101 gcgtttgggg ttagccctga ccaacagttg gctctggaag ctatatactc
151 tcgcaagtcg ctactttggg agtcctcccc ctttacattt gaagttggcg
201 ctatcgaatg gatattcagt caaaagattc caatctgatt gtaaaggaag
251 cagggaaatc agcaaagcgc ggaagtacaa agaacaagct agacgtggct
301 cacagtggag tatccaaggg tacatctcgt gacattgtcg gtgctaattt
351 tgtcacagtt gctgataaag tggagtttgt ggtccatctc aatttctgat
401 ttcctaccac agccacactt attgcaccct aatctacttg tctgcattgt
451 gttgtgcatt ttctttagtt cagttcttag ccagggacag agttatagtt
501 atagttactt ttcaactagc accagtgata aattcatctc agtagctgta
551 ggaaatggcg gccaaagata atccagcagt catcgcagcc gtggctaggc
601 gggagcagtg ggcaatcaag cttcaatcca agggttgggg ctccttgtct
651 aaagcccaga aagccaccgc acgctcgtac gggataggaa accctccaac
701 agtcgtggtg cctcgcacta cccggctggt ggctgggaat cccacgaacg
751 cacggcgggc gcgaggagag cctggcaatg ccaaaatggg caccaccata
801 accaagcagg aatacatggg cgagcttcat tcttcttcaa agattgaaac
851 ttacttgctc gaccccaaga atgtaaggag ctttcctcag ttaagcgggc
901 ttgctatcgg ctataacaag tacaagatca ctgacttcaa ggtgcggtac
951 agtcccaaat gcagcgacag tgagtgtggg ttgaccattg cttactccag
1001 cgactcttct gatccaccgc cgaagaacaa attcaacttg tttagcatga
1051 accacaagta tgaaacagcc gcgcacaagc cactcctagt aacacttccc
1101 gtgtctaaag agaccagatt cttgcgggat aagtgtactg atgactccaa
1151 actcgtagac agtggagcgg tgcatgtcct ggtggacggg aaacacgaag
1201 gcaggatcgg agaacttttc ttcgagttaa ccatcgtgtt ttctgaacct
1251 accttctgca atcaccactc ccaagtcatc aaagggctca aggagagtga
1301 aggacccgaa tacgtcaagg ttgagcctga caaggaaagc gtgaaacttg
1351 ttttccaggc agcgggggca tacttaattt ctatagtggc ctccaaacta
1401 gagcgaatcg ggcagctggg tgcttctgaa ggcgacaagc tggtagttga
1451 aagtactgat aagagtgcct gcctctgtag aatagaggca gagcaaccag
1501 gtagcgctgt agtattagtt tatgccagca gggaggccat taccctgcga
1551 gcttacatca acaagctatg aggacagcca ctgcggtggg gtcagtctcc
1601 tggtgcgcca acacccagaa ggggagacaa cttcagtggt tctcaacccg
1651 atgcttaatg taagcctaag aaaatccaaa aacagagtgt tactgctttc
1701 agtgtgcgag ctttatttgc tcacttcctc cgtcgataaa atcccgaatt
1751 ttcgggtggg cttcggcgga catccttaat gaagaacggg ggggtaaccc
1801 acccccctga tctgccc