Sequence of DPV Sida micrantha mosaic virus

Sida micrantha mosaic virus - [Brazil:okra] isolate 5157 segment DNA-B, complete sequence.

ACC No: EU908734

Dated: 2008-11-01 | Length: 2653 | CRC: 1061843362

                
ID   EU908734; SV 1; circular; genomic DNA; STD; VRL; 2653 BP.
XX
AC   EU908734;
XX
DT   17-SEP-2008 (Rel. 97, Created)
DT   01-NOV-2008 (Rel. 97, Last updated, Version 2)
XX
DE   Sida micrantha mosaic virus - [Brazil:okra] isolate 5157 segment DNA-B,
DE   complete sequence.
XX
KW   .
XX
OS   Sida micrantha mosaic virus - [Brazil:okra]
OC   Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC   unclassified Begomovirus.
XX
RN   [1]
RP   1-2653
RA   Aranha S.A., Albuquerque L.C., Inoue-Nagata A.K.;
RT   "Molecular and biological characterization of an okra begomovirus in
RT   Brazil";
RL   Unpublished.
XX
RN   [2]
RP   1-2653
RA   Aranha S.A., Albuquerque L.C., Boiteux L.S., Inoue-Nagata A.K.;
RT   "First confirmed report of an okra begomovirus in Brazil";
RL   Unpublished.
XX
RN   [3]
RP   1-2653
RA   Aranha S.A., Albuquerque L.C., Inoue-Nagata A.K.;
RT   ;
RL   Submitted (17-JUL-2008) to the EMBL/GenBank/DDBJ databases.
RL   Virology, Embrapa Vegetables, Km 9 BR 60, Brasilia, DF 70359970, Brazil
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .2653
FT                   /organism="Sida micrantha mosaic virus - [Brazil:okra]"
FT                   /segment="DNA-B"
FT                   /host="okra"
FT                   /lab_host="Nicotiana benthamiana"
FT                   /isolate="5157"
FT                   /mol_type="genomic DNA"
FT                   /country="Brazil"
FT                   /isolation_source="leaf"
FT                   /collected_by="Alice K Inoue-Nagata"
FT                   /collection_date="Apr-2007"
FT                   /clone="1"
FT                   /db_xref="taxon:555980"
FT   gene            547. .1317
FT                   /gene="BV1"
FT   CDS             547. .1317
FT                   /codon_start=1
FT                   /gene="BV1"
FT                   /product="nuclear shuttle protein"
FT                   /note="NSP"
FT                   /protein_id="ACH48032.1"
FT                   /translation="MFPSRYRRGWSSNQRRGYSRNPVFKRSYGLKRSDVKRRPSNPNKA
FT                   QEDGKMSTQRIHENQFGPEFVMGHNSAISTFITYPTLGKALPNRSRSYIKLRRLRFKGT
FT                   VKIERAHADVNMDGSNPKVEGVFSLVVVVDRKPHLGSSGALLTFDELFGARIHSHGNLA
FT                   ISPSLKDRFYIRHVFKRVLSVEKDTTMVDLEGTTTLSNRRFSCWSSFKDVDRESCNGVY
FT                   ANISKNALLVYYCWMSDNMSKASTFVSFDLDYVG"
FT   gene            complement(1397. .2278)
FT                   /gene="BC1"
FT   CDS             complement(1397. .2278)
FT                   /codon_start=1
FT                   /gene="BC1"
FT                   /product="movement protein"
FT                   /note="MP"
FT                   /protein_id="ACH48033.1"
FT                   /translation="MESQLVNPPNAFNYIESQRDEYQLSHDLTEILLQFPSTASQLSAR
FT                   LSRSCMKIDHCVIEYRQQVPINAVGSVVVEIHDKRMTDNESLQASWTFPIRCNIDLHYF
FT                   SSSFFSLKDPIPWKLYYRVCDTNVHQRTHFAKFKGKLKLSTAKHSVDIPFRAPTVKILS
FT                   KQFTEKDIDFSHVGYGKWERKMIRSASISGVGLHSPIEIRPGESWAVRSTVGINHSDAD
FT                   SDIENATHPYRQLHRLGTSSLDPGDSASIVGAQRAQSNITMSMAQLNELVRATAQECIN
FT                   SNCTPSQPKSLH"
XX
SQ   Sequence 2653 BP; 645 A; 563 C; 669 G; 776 T; 0 other;

eu908734 Length: 2653  01-NOV-2008  Type: N  Check: 8541  ..

       1  accggatggc cgcgcgattt tgcccccccc ctacgtggcg cgctggtgcc
      51  cgttggatac cgctctccct ggtggtcccc cttccctggt gctactcccc
     101  cctcccccgg ctcaattcaa ttgagcgcta ttttggagtc cgcgaaatga
     151  gttaaccgca ttttttgacg tccgccttcc gtcagcgcct ttaattcgaa
     201  ttaaaggcat ttcatttatt gtgtccaatc attttgcttg ggttgtctcc
     251  tcgcgcgacg atcgcttttg cccaactgga tgagatgcga tcttgatcgt
     301  tggataataa tatattttat gcagcctctt taatttgaaa tttgaattat
     351  tggcgagcgt cgtgctacca tgtcccatcg tacgaacttg atgagctgga
     401  ccagttaagt tgcacctaca gagttaattt gatcaaggaa tttatgttta
     451  aattccctgt tgacagatgg tgatatcagg ttaattgtcc acgtctattg
     501  tttgagtagc tacagttaac gtttgtgtac tagtcagttt gataacatgt
     551  ttcccagtag gtatagacgt ggttggtcgt ccaatcaacg acgtggttat
     601  tcacgtaatc ctgtgtttaa gcgttcttac ggacttaaac gaagtgatgt
     651  caagcgacga cccagtaatc ctaacaaagc ccaagaggac ggcaagatgt
     701  ctactcaacg tatacacgag aaccagtttg ggcctgaatt tgtgatgggt
     751  cataattcag ccatttcgac cttcataaca taccctactc ttgggaaggc
     801  tctccctaac cggtccaggt catatatcaa gttaagacga ctgcgtttta
     851  agggtactgt caagattgag cgtgcacatg ctgacgtcaa catggatggg
     901  tcgaacccaa aggtggaagg agtcttctct ctcgttgttg ttgtggatcg
     951  taaacctcat ttgggctcat ctggagccct gctgaccttt gatgagttat
    1001  tcggagctag gatccacagc catggtaatc tggcgatatc gccgtctctc
    1051  aaggatcggt tctacataag acacgtgttc aaacgtgtgt tgtccgttga
    1101  gaaggatacg acgatggtgg acctggaagg gacgacgact ctttcgaaca
    1151  gacgttttag ttgttggtca tcgtttaagg acgttgaccg tgaatcgtgt
    1201  aatggcgtct atgcgaacat aagcaagaac gcccttttag tttattactg
    1251  ttggatgtcg gataatatgt ccaaggcatc gacatttgta tcgtttgacc
    1301  tcgattatgt tgggtaaatt ggaaatttaa tacaagctta atgcaaagaa
    1351  ccttatttat atttattaat aagtagacac gttcttcaca ataatctcag
    1401  tgcaatgatt tgggctgaga aggggtacag ttgctgttga tacattcctg
    1451  ggccgtagcc cgaactagtt cgtttagttg ggccattgac atggttatgt
    1501  tggattgggc cctctgagca cccactattg aggccgagtc tccagggtct
    1551  aggctactgg ttcccagcct gtgcagctgc ctgtatgggt gcgttgcgtt
    1601  ctctatatcg gagtctgcgt ctgagtgatt gattcctaca gtgcttctga
    1651  cagcccagga ctctccaggc ctgatttcaa ttgggctgtg cagcccaaca
    1701  cccgatatgg acgcagatct gatcatcttc ctctcccact ttccgtagcc
    1751  cacgtggctg aagtcgatgt ctttctctgt aaattgcttg gagaggatct
    1801  tcactgttgg ggcacggaaa ggtatgtcta cagagtgttt cgccgtcgac
    1851  aacttcagct ttcccttgaa tttcgcgaag tgggtcctct gatggacgtt
    1901  agtgtcgcac actctgtagt acaatttcca tggaattggg tccttgaggg
    1951  agaagaatga cgaggaaaag taatggaggt cgatgttgca tcgtatcgga
    2001  aacgtccagg acgcttgcag cgactcgttg tcagtcattc tcttgtcatg
    2051  gatctccacg acgacggaac ccacggcgtt aatgggtact tgctgtctgt
    2101  attctatgac gcagtggtct attttcatac aactgcgact gagccgggcg
    2151  cttaattggg acgccgtgga gggaaattga agaagaatct ctgtcaggtc
    2201  atgagaaagc tgatattcat cacgctgaga ctcaatgtaa ttgaatgcgt
    2251  ttggaggatt cactagctga gattccatta cttttaatta tcagaaatag
    2301  gccgcgcagc ggaaacgaca gcgagatttg agcaggtgaa actaacaggt
    2351  ctgaaagact ctagggttta tgttgattat gaaagagtaa agtggagaag
    2401  atgataatga agacgagttg ggttgggctg ttactggacg gattgagagg
    2451  agatattgtc caattgaggt gtttcattta acaactcgtc tgattcctcc
    2501  ttaaatagaa gatgagtacg gagtggcata tttgtaaata aggggggaac
    2551  cccgattgag agctcgctct ataagtcata tgtattgggg taaaggggac
    2601  aatatatagt agaagatcct aagggccttt aagcggccat ccgcactaat
    2651  att