Sequence of DPV Sida micrantha mosaic virus
Sida micrantha mosaic virus - [Brazil:okra] isolate 5157 segment DNA-B, complete sequence.
ACC No: EU908734
Dated: 2008-11-01 | Length: 2653 | CRC: 1061843362
ID EU908734; SV 1; circular; genomic DNA; STD; VRL; 2653 BP. XX AC EU908734; XX DT 17-SEP-2008 (Rel. 97, Created) DT 01-NOV-2008 (Rel. 97, Last updated, Version 2) XX DE Sida micrantha mosaic virus - [Brazil:okra] isolate 5157 segment DNA-B, DE complete sequence. XX KW . XX OS Sida micrantha mosaic virus - [Brazil:okra] OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus; OC unclassified Begomovirus. XX RN [1] RP 1-2653 RA Aranha S.A., Albuquerque L.C., Inoue-Nagata A.K.; RT "Molecular and biological characterization of an okra begomovirus in RT Brazil"; RL Unpublished. XX RN [2] RP 1-2653 RA Aranha S.A., Albuquerque L.C., Boiteux L.S., Inoue-Nagata A.K.; RT "First confirmed report of an okra begomovirus in Brazil"; RL Unpublished. XX RN [3] RP 1-2653 RA Aranha S.A., Albuquerque L.C., Inoue-Nagata A.K.; RT ; RL Submitted (17-JUL-2008) to the EMBL/GenBank/DDBJ databases. RL Virology, Embrapa Vegetables, Km 9 BR 60, Brasilia, DF 70359970, Brazil XX FH Key Location/Qualifiers FH FT source 1. .2653 FT /organism="Sida micrantha mosaic virus - [Brazil:okra]" FT /segment="DNA-B" FT /host="okra" FT /lab_host="Nicotiana benthamiana" FT /isolate="5157" FT /mol_type="genomic DNA" FT /country="Brazil" FT /isolation_source="leaf" FT /collected_by="Alice K Inoue-Nagata" FT /collection_date="Apr-2007" FT /clone="1" FT /db_xref="taxon:555980" FT gene 547. .1317 FT /gene="BV1" FT CDS 547. .1317 FT /codon_start=1 FT /gene="BV1" FT /product="nuclear shuttle protein" FT /note="NSP" FT /protein_id="ACH48032.1" FT /translation="MFPSRYRRGWSSNQRRGYSRNPVFKRSYGLKRSDVKRRPSNPNKA FT QEDGKMSTQRIHENQFGPEFVMGHNSAISTFITYPTLGKALPNRSRSYIKLRRLRFKGT FT VKIERAHADVNMDGSNPKVEGVFSLVVVVDRKPHLGSSGALLTFDELFGARIHSHGNLA FT ISPSLKDRFYIRHVFKRVLSVEKDTTMVDLEGTTTLSNRRFSCWSSFKDVDRESCNGVY FT ANISKNALLVYYCWMSDNMSKASTFVSFDLDYVG" FT gene complement(1397. .2278) FT /gene="BC1" FT CDS complement(1397. .2278) FT /codon_start=1 FT /gene="BC1" FT /product="movement protein" FT /note="MP" FT /protein_id="ACH48033.1" FT /translation="MESQLVNPPNAFNYIESQRDEYQLSHDLTEILLQFPSTASQLSAR FT LSRSCMKIDHCVIEYRQQVPINAVGSVVVEIHDKRMTDNESLQASWTFPIRCNIDLHYF FT SSSFFSLKDPIPWKLYYRVCDTNVHQRTHFAKFKGKLKLSTAKHSVDIPFRAPTVKILS FT KQFTEKDIDFSHVGYGKWERKMIRSASISGVGLHSPIEIRPGESWAVRSTVGINHSDAD FT SDIENATHPYRQLHRLGTSSLDPGDSASIVGAQRAQSNITMSMAQLNELVRATAQECIN FT SNCTPSQPKSLH" XX SQ Sequence 2653 BP; 645 A; 563 C; 669 G; 776 T; 0 other; eu908734 Length: 2653 01-NOV-2008 Type: N Check: 8541 .. 1 accggatggc cgcgcgattt tgcccccccc ctacgtggcg cgctggtgcc 51 cgttggatac cgctctccct ggtggtcccc cttccctggt gctactcccc 101 cctcccccgg ctcaattcaa ttgagcgcta ttttggagtc cgcgaaatga 151 gttaaccgca ttttttgacg tccgccttcc gtcagcgcct ttaattcgaa 201 ttaaaggcat ttcatttatt gtgtccaatc attttgcttg ggttgtctcc 251 tcgcgcgacg atcgcttttg cccaactgga tgagatgcga tcttgatcgt 301 tggataataa tatattttat gcagcctctt taatttgaaa tttgaattat 351 tggcgagcgt cgtgctacca tgtcccatcg tacgaacttg atgagctgga 401 ccagttaagt tgcacctaca gagttaattt gatcaaggaa tttatgttta 451 aattccctgt tgacagatgg tgatatcagg ttaattgtcc acgtctattg 501 tttgagtagc tacagttaac gtttgtgtac tagtcagttt gataacatgt 551 ttcccagtag gtatagacgt ggttggtcgt ccaatcaacg acgtggttat 601 tcacgtaatc ctgtgtttaa gcgttcttac ggacttaaac gaagtgatgt 651 caagcgacga cccagtaatc ctaacaaagc ccaagaggac ggcaagatgt 701 ctactcaacg tatacacgag aaccagtttg ggcctgaatt tgtgatgggt 751 cataattcag ccatttcgac cttcataaca taccctactc ttgggaaggc 801 tctccctaac cggtccaggt catatatcaa gttaagacga ctgcgtttta 851 agggtactgt caagattgag cgtgcacatg ctgacgtcaa catggatggg 901 tcgaacccaa aggtggaagg agtcttctct ctcgttgttg ttgtggatcg 951 taaacctcat ttgggctcat ctggagccct gctgaccttt gatgagttat 1001 tcggagctag gatccacagc catggtaatc tggcgatatc gccgtctctc 1051 aaggatcggt tctacataag acacgtgttc aaacgtgtgt tgtccgttga 1101 gaaggatacg acgatggtgg acctggaagg gacgacgact ctttcgaaca 1151 gacgttttag ttgttggtca tcgtttaagg acgttgaccg tgaatcgtgt 1201 aatggcgtct atgcgaacat aagcaagaac gcccttttag tttattactg 1251 ttggatgtcg gataatatgt ccaaggcatc gacatttgta tcgtttgacc 1301 tcgattatgt tgggtaaatt ggaaatttaa tacaagctta atgcaaagaa 1351 ccttatttat atttattaat aagtagacac gttcttcaca ataatctcag 1401 tgcaatgatt tgggctgaga aggggtacag ttgctgttga tacattcctg 1451 ggccgtagcc cgaactagtt cgtttagttg ggccattgac atggttatgt 1501 tggattgggc cctctgagca cccactattg aggccgagtc tccagggtct 1551 aggctactgg ttcccagcct gtgcagctgc ctgtatgggt gcgttgcgtt 1601 ctctatatcg gagtctgcgt ctgagtgatt gattcctaca gtgcttctga 1651 cagcccagga ctctccaggc ctgatttcaa ttgggctgtg cagcccaaca 1701 cccgatatgg acgcagatct gatcatcttc ctctcccact ttccgtagcc 1751 cacgtggctg aagtcgatgt ctttctctgt aaattgcttg gagaggatct 1801 tcactgttgg ggcacggaaa ggtatgtcta cagagtgttt cgccgtcgac 1851 aacttcagct ttcccttgaa tttcgcgaag tgggtcctct gatggacgtt 1901 agtgtcgcac actctgtagt acaatttcca tggaattggg tccttgaggg 1951 agaagaatga cgaggaaaag taatggaggt cgatgttgca tcgtatcgga 2001 aacgtccagg acgcttgcag cgactcgttg tcagtcattc tcttgtcatg 2051 gatctccacg acgacggaac ccacggcgtt aatgggtact tgctgtctgt 2101 attctatgac gcagtggtct attttcatac aactgcgact gagccgggcg 2151 cttaattggg acgccgtgga gggaaattga agaagaatct ctgtcaggtc 2201 atgagaaagc tgatattcat cacgctgaga ctcaatgtaa ttgaatgcgt 2251 ttggaggatt cactagctga gattccatta cttttaatta tcagaaatag 2301 gccgcgcagc ggaaacgaca gcgagatttg agcaggtgaa actaacaggt 2351 ctgaaagact ctagggttta tgttgattat gaaagagtaa agtggagaag 2401 atgataatga agacgagttg ggttgggctg ttactggacg gattgagagg 2451 agatattgtc caattgaggt gtttcattta acaactcgtc tgattcctcc 2501 ttaaatagaa gatgagtacg gagtggcata tttgtaaata aggggggaac 2551 cccgattgag agctcgctct ataagtcata tgtattgggg taaaggggac 2601 aatatatagt agaagatcct aagggccttt aagcggccat ccgcactaat 2651 att