Sequence of DPV Chilli leaf curl virus
Chilli leaf curl virus isolate Narwan segment DNA A, complete sequence.
ACC No: EU939533
Dated: 2008-09-17 | Length: 2756 | CRC: 23022404
ID EU939533; SV 1; circular; genomic DNA; STD; VRL; 2756 BP.
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AC EU939533;
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DT 17-SEP-2008 (Rel. 97, Created)
DT 17-SEP-2008 (Rel. 97, Last updated, Version 1)
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DE Chilli leaf curl virus isolate Narwan segment DNA A, complete sequence.
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KW .
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OS Chilli leaf curl virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2756
RA Senanayake D., Mandal B., Lodha S., Varma A.;
RT "First report of Chilli leaf curl virus affecting chilli in India";
RL Plant Pathol. 56:343-343(2007).
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RN [2]
RP 1-2756
RA Senanayake D., Mandal B., Varma A.;
RT ;
RL Submitted (02-AUG-2008) to the EMBL/GenBank/DDBJ databases.
RL Plant Pathology, Indian Agricultural Research Institute, New Delhi, Delhi
RL 110012, India
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FH Key Location/Qualifiers
FH
FT source 1. .2756
FT /organism="Chilli leaf curl virus"
FT /segment="DNA A"
FT /specific_host="Capsicum annuum"
FT /isolate="Narwan"
FT /mol_type="genomic DNA"
FT /country="India"
FT /collection_date="05-Dec-2004"
FT /db_xref="taxon:172278"
FT gene 148. .504
FT /gene="AV2"
FT CDS 148. .504
FT /codon_start=1
FT /gene="AV2"
FT /product="pre-coat protein"
FT /note="AV2 protein"
FT /protein_id="ACH86017.1"
FT /translation="MWDPLVNEFPETVHGFRCMLAVKYLQLLENTYSPDTLGYDLIRDL
FT ISVIRAKNYVQATSRYNHFHARLEGTPPSQLRQPLCQPCCCPHCPRHKGQSMGEQAHVQ
FT KAQDVQDVQKPRCS"
FT gene 308. .1078
FT /gene="AV1"
FT CDS 308. .1078
FT /codon_start=1
FT /gene="AV1"
FT /product="coat protein"
FT /note="AV1 protein"
FT /protein_id="ACH86018.1"
FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYASRAAAPTVRVTKARAWV
FT NRPMYRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVARGTGLTHR
FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP
FT STATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH
FT TENALMLYMACTHASNPVYATLKIRIYFYDSVSN"
FT gene complement(1072. .1479)
FT /gene="AC3"
FT CDS complement(1075. .1479)
FT /codon_start=1
FT /gene="AC3"
FT /product="replication enhancer protein"
FT /note="AC3 protein"
FT /protein_id="ACH86021.1"
FT /translation="MDSRTGEPITAAQAENSVFIWEITNPLYFKITEHHNRPFLRNHDI
FT ITVQIRFNHNLRKALGIHKCFLTFRIWTTLQPQTGHFLRVFRTQVYKYLNNFAVISINN
FT VLRAVNHVLWNVLAQTIHVQSSNIIKFNLY"
FT gene complement(1220. .1624)
FT /gene="AC2"
FT CDS complement(1220. .1624)
FT /codon_start=1
FT /gene="AC2"
FT /product="transactivator protein"
FT /note="AC2 protein"
FT /protein_id="ACH86020.1"
FT /translation="MRPSSPSKAHSTQVPIKVQHRLAKRGTRRRRADLDCGCSYFIALR
FT CHGYGFTHRGTHHCSSSREFRVYLGDNKSPVFQDNRAPQPAIPEEPRHHHRADTVQSQP
FT EESVGDTQMFSNLPNLDDLTASDWSFLKGI"
FT gene complement(1527. .2612)
FT /gene="AC1"
FT CDS complement(1527. .2612)
FT /codon_start=1
FT /gene="AC1"
FT /product="replication associated protein"
FT /note="AC1 protein"
FT /protein_id="ACH86019.1"
FT /translation="MPRVGRFNINAKNYFLTYPNCSLTKEEALSQLQNLETPVNKLFIR
FT VSRELHENGEPHLHVLVQFEGKYQCTNNRFFDLISPTRSAHFHPNIQRAKSSSDVKAYV
FT EKDGDSIDFWSFQIDGRSARGGCQSANDAYAEAINSGSKASALNILREKAPKDYVLQFH
FT NLNANLDRIFTPPLEVYVSPFCSSSFDQVPEELEEWAAENVLGAAARPLRPMSIVIEGD
FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPVQIKGGIPAIFLCNPGHNSSYKEFLDEEKNSALKYWALKNATFITLEGPL
FT YSGSNQSAAQAGQEGDQASSG"
FT gene complement(2162. .2455)
FT /gene="AC4"
FT CDS complement(2162. .2455)
FT /codon_start=1
FT /gene="AC4"
FT /product="AC4 protein"
FT /protein_id="ACH86022.1"
FT /translation="MGNLIYTCSSNSRENTNAQTTDSSTLFPQPGQHISIRTFRELKAL
FT QTSKPMWRKTETPLTFGVSKSMADQLEEVANLPTTHMPRQSIQGPKLRPSIF"
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SQ Sequence 2756 BP; 744 A; 567 C; 636 G; 809 T; 0 other;
eu939533 Length: 2756 17-SEP-2008 Type: N Check: 1889 ..
1 accggatggc cgcgattttt tttacccgtg ggccccacca cgcacgtgct
51 gacaaggaca tgtgcaccaa ttaaaaccgt tcctcatagc ttaattattt
101 catggtcccc cctataaact tgggctccaa gtagtgcact cttaccaatg
151 tgggatccat tagtaaacga gtttcctgaa accgttcacg gttttaggtg
201 tatgttagca gttaaatatc tgcagctact agaaaataca tattctccag
251 acactctggg gtacgattta atcagggatt tgatctccgt tattagggct
301 aagaattatg tccaagcgac cagcagatat aatcatttcc acgcccgcct
351 cgaaggtacg ccgccgtctc aacttcgaca gcccttatgc cagccgtgct
401 gctgccccca ctgtccgcgt cacaaaggcc agagcatggg tgaacaggcc
451 catgtacaga aagcccagga tgtacaggat gtacagaagc ccagatgttc
501 ctaggggttg tgaaggccca tgtaaggtcc agtcttttga gtctagacac
551 gatgtagttc atatagggaa ggttatgtgt attagtgatg ttgcccgtgg
601 tactgggtta acccatagag taggtaagcg tttctgtgtt aagtctgtgt
651 atgtattagg gaagatatgg atggatgaga atatcaagac taagaatcac
701 acgaatagtg tgatgttttt ccttgtccgt gatcgtcgtc ctgttgataa
751 accacaagat tttggagagg tgttcaacat gtttgacaac gagcctagca
801 ctgccactgt gaagaatatg catagagatc gttatcaggt tttgaggaaa
851 tggcacgcaa cggttactgg tggacagtac gcgtcgaagg aacaggcatt
901 agttaagaag ttcgttaggg ttaataatta tgttgtgtat aaccagcagg
951 aagctggtaa atatgagaat catactgaga atgcattgat gttgtacatg
1001 gcgtgtactc acgcctctaa tcctgtgtat gctaccttaa agatacggat
1051 ctatttctat gattcagtat caaattaata aagattgaat tttattatat
1101 ttgaactttg tacatgaatt gtttgtgcta atacattcca taatacatgg
1151 ttgacagctc taagtacatt gtttatacta attacagcaa aattatttaa
1201 atacttatac acttgggtcc taaataccct taagaaatga ccagtctgag
1251 gctgtaaggt cgtccagatt cggaaggtta gaaaacattt gtgtatcccc
1301 aacgctttcc tcaggttgtg attgaaccgt atctgcacgg tgatgatgtc
1351 gtggttcctc aggaatggcc ggttgtggtg ctctgttatc ttgaaataca
1401 ggggatttgt tatctcccag ataaacacgg aattctctgc ttgagctgca
1451 gtgatgggtt cccctgtgcg tgaatccata gccgtggcag cgtaatgcga
1501 tgaaatatga acaaccgcag tctaggtcag cccgacgacg cctggtcccc
1551 ctcttggcca gcctgtgctg cactttgatt ggaacctgag tagagtgggc
1601 cttcgagggt gatgaaggtc gcattcttta aagcccaata tttgagtgcg
1651 ctatttttct cttcatccaa gaactcttta tagctggaat tgtgtcctgg
1701 attgcagagg aagatagcgg gaattccacc tttaatttga actggttttc
1751 cgtatttagt gtttgattgc cagtcccttt gggcccccat gaattcttta
1801 aagtgcttta ggtagtgggg atcgacgtca tcaatgacgt tgtaccaggc
1851 gtcattactg tagacctttg ggctaaggtc gagatgtcca cacaaatagt
1901 tgtgtggacc taatgacctg gcccacatag tcttccccgt cctactatca
1951 ccctctatga caatactcat gggtcttaac ggccgcgcag cggcaccgag
2001 aacattctcg gcagcccatt cctcaagttc ctcgggaact tgatcaaaag
2051 aagaagaaca aaaaggagaa acataaacct ccaagggagg tgtaaaaatc
2101 ctatctaaat tagcatttaa attatgaaat tgtaaaacat aatctttggg
2151 agctttctcc cttaaaatat tgagggccga agctttggac cctgaattga
2201 ttgcctcggc atatgcgtcg ttggcagatt ggcaacctcc tctagctgat
2251 ctgccatcga tttggaaact ccaaaagtca atggagtctc cgtctttctc
2301 cacataggct ttgacgtctg aagagctttt agctctctga atgttcggat
2351 ggaaatgtgc tgaccgggtt ggggaaataa ggtcgaagaa tctgttgttt
2401 gtgcattggt attttccctc gaattggacg agcacgtgta gatgaggttc
2451 cccattctcg tgcaattctc gagaaaccct aataaataat ttattaactg
2501 gggtttccaa gttctgtagt tgggaaagtg cctcttcttt agtaagagag
2551 cagttgggat atgttaggaa ataattttta gcatttatat tgaatctccc
2601 aaccctaggc atattggtgg acactcaaac ttactatgta atcggtggaa
2651 tggtggacaa tatatatgtg tccaccaatg gcactttggt aattattgtc
2701 agctaaaaaa attcaaaatt caaatttcga caaaagcggc catccgcatt
2751 aatatt