Sequence of DPV Okra yellow vein mosaic virus

Mesta yellow vein mosaic Bahraich virus-[India:Kaisargunj:2008] segment DNA A, complete sequence.

ACC No: FJ159267

Dated: 2009-04-11 | Length: 2737 | CRC: 1511251851

                
ID   FJ159267; SV 1; circular; genomic DNA; STD; VRL; 2737 BP.
XX
AC   FJ159267;
XX
DT   28-SEP-2008 (Rel. 97, Created)
DT   11-APR-2009 (Rel. 100, Last updated, Version 3)
XX
DE   Mesta yellow vein mosaic Bahraich virus-[India:Kaisargunj:2008] segment DNA
DE   A, complete sequence.
XX
KW   .
XX
OS   Mesta yellow vein mosaic Bahraich virus-[India:Kaisargunj:2008]
OC   Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC   unclassified Begomovirus.
XX
RN   [1]
RP   1-2737
RA   Roy A., Acharyya S., Das S., Ghosh R., Paul S., Srivastavab R.M.,
RA   Ghosh S.K.;
RT   "Distribution, epidemiology and molecular variability of the begomovirus
RT   complexes associated with yellow vein mosaic disease of mesta in India";
RL   Virus Res. 141(2):237-246(2009).
XX
RN   [2]
RP   1-2737
RA   Das S., Ghosh R., Acharyya S., Paul S., Palit P., Das A., Roy A.,
RA   Ghosh S.K.;
RT   ;
RL   Submitted (25-AUG-2008) to the EMBL/GenBank/DDBJ databases.
RL   Crop Protection, Central Research Institute for Jute and Allied Fibres,
RL   Barrackpore, Kolkata, West Bengal 700120, India
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .2737
FT                   /organism="Mesta yellow vein mosaic Bahraich
FT                   virus-[India:Kaisargunj:2008]"
FT                   /segment="DNA A"
FT                   /host="Hibiscus cannabinus"
FT                   /isolate="Kaisargunj:North India"
FT                   /mol_type="genomic DNA"
FT                   /country="India:North India, Kaisargunj"
FT                   /clone="NI-FL-25"
FT                   /db_xref="taxon:562951"
FT   gene            117. .482
FT                   /gene="AV2"
FT   CDS             117. .482
FT                   /codon_start=1
FT                   /gene="AV2"
FT                   /product="pre-coat protein"
FT                   /db_xref="GOA:B6DRT5"
FT                   /db_xref="InterPro:IPR005159"
FT                   /db_xref="UniProtKB/TrEMBL:B6DRT5"
FT                   /protein_id="ACI06047.1"
FT                   /translation="MWDPLLNEFPDTVHGFRCMLSVKYLQLLSQDYSPDTLGYELIRDL
FT                   ICILRSRNYVEASCRYRHFYARVESTSASELRQPIHQPCCCPHCPRHKATGMDKQTYEQ
FT                   EAQNVSDVQKSGCSKGL"
FT   gene            complement(181. .585)
FT                   /gene="AC5"
FT   CDS             complement(181. .585)
FT                   /codon_start=1
FT                   /gene="AC5"
FT                   /product="AC5 protein"
FT                   /db_xref="InterPro:IPR013671"
FT                   /db_xref="UniProtKB/TrEMBL:B6DRT6"
FT                   /protein_id="ACI06053.1"
FT                   /translation="MGQTDSTRNIRNTHHLTNMDNIMSGLKRLYLTGTLTTPWNIRTSV
FT                   HPIHSGLPVHRSVCPCLLLCDADNGGSNTAGVWAAEVQTPTYFRRGRRNDDIGSSLRHN
FT                   YESVKYRLNPVLTRNQVYPVNNPAIKVANI"
FT   gene            277. .1047
FT                   /gene="AV1"
FT   CDS             277. .1047
FT                   /codon_start=1
FT                   /gene="AV1"
FT                   /product="coat protein"
FT                   /db_xref="GOA:B6DRT7"
FT                   /db_xref="InterPro:IPR000650"
FT                   /db_xref="UniProtKB/TrEMBL:B6DRT7"
FT                   /protein_id="ACI06048.1"
FT                   /translation="MSKRAADIVISTPASKVRRRLNFGSPYTSRVAAPIVRVTKQQAWT
FT                   NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGVGLTHR
FT                   IGKLFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRLPVDKPQDFGEVFNMFDNEP
FT                   STATVKNSHRDRYQVLRKWHATVTGGQYVSKEQALVKKFVRVNNYVVYNQQEAGKYENH
FT                   TENALMLYMACTHASNPVYATLKIRIYFYDSVTN"
FT   gene            complement(1050. .1454)
FT                   /gene="AC3"
FT                   /gene_synonym="ren"
FT   CDS             complement(1050. .1454)
FT                   /codon_start=1
FT                   /gene="AC3"
FT                   /gene_synonym="ren"
FT                   /product="replication enhancer protein"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProtKB/TrEMBL:B6DRT8"
FT                   /protein_id="ACI06051.1"
FT                   /translation="MDSRTGERITAAHSTDGVFIWEVPNPLYFKILSHDNRPFTTNMDI
FT                   ITMRIHINYNLRKALGVHKCFLTFRIWTTLHPPTGLFLRVFKTQVLKYLNNLGVISLNL
FT                   VIKAVEHVLYNVINQTMYVDQYSDIKFKLY"
FT   gene            complement(1147. .1599)
FT                   /gene="AC2"
FT                   /gene_synonym="trap"
FT   CDS             complement(1147. .1599)
FT                   /codon_start=1
FT                   /gene="AC2"
FT                   /gene_synonym="trap"
FT                   /product="transcription activator protein"
FT                   /db_xref="GOA:B6DRT9"
FT                   /db_xref="InterPro:IPR000942"
FT                   /db_xref="UniProtKB/TrEMBL:B6DRT9"
FT                   /protein_id="ACI06050.1"
FT                   /translation="MQHSSFSPNRSTPVPIKVQHREAKRRNRRKRVDLECGCSYYLSIN
FT                   CHNHGFSHRGTHHCSSFNGWRLYLGGSKSPIFQNPQPRQPSIHDEHGHHNNEDPYQLQP
FT                   SKSSGSAQVFSNLPNLDDLTPSDWSFLKGIQNPSTQVSQQSRCNLT"
FT   gene            complement(1496. .2584)
FT                   /gene="AC1"
FT                   /gene_synonym="rep"
FT   CDS             complement(1496. .2584)
FT                   /codon_start=1
FT                   /gene="AC1"
FT                   /gene_synonym="rep"
FT                   /product="replication initiator protein"
FT                   /db_xref="GOA:B6DRU0"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="UniProtKB/TrEMBL:B6DRU0"
FT                   /protein_id="ACI06049.1"
FT                   /translation="MPPRRNGIYSKDYFVTYPKCSLTKEEALSQLLNLQTPTSKKYIRI
FT                   CRELHEDGTPRVRVLIQFEGKFKCQNMRFFDLVSPSWSAHFRPNIQGAKSSSDVKSYIE
FT                   KDGDILDWGQFQIDGRSARGGQQTANDAYAAALNAGSKSEAIRVIKELAPKDFVLQFHN
FT                   LNANLNRIFQEPPAPYVSPFSSSSFDQVPEELEEWASENVVDAAARPLRPQSIVIEGDS
FT                   RTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQ
FT                   SNTKYGKPVQIKGGIPTIFLCNPGPNASYKEFLDEDKNSALKSWALKNATFVFLTQPLY
FT                   SGTNQSSTQGSEEAQQEETSGP"
FT   gene            complement(2092. .2430)
FT                   /gene="AC4"
FT   CDS             complement(2092. .2430)
FT                   /codon_start=1
FT                   /gene="AC4"
FT                   /product="regulatory protein"
FT                   /db_xref="InterPro:IPR002488"
FT                   /db_xref="UniProtKB/TrEMBL:B6DRU1"
FT                   /protein_id="ACI06052.1"
FT                   /translation="MGLLACEFSSSSKGNSSARICDSSTWSPQAGQHISDQTYRELNPA
FT                   PTSSPTSRRTGTFSTGDNFRSTEGQQEEGNRQPMTLTPQHLTREVSRRLLESLRNWLLK
FT                   ILYCNFII"
XX
SQ   Sequence 2737 BP; 718 A; 550 C; 641 G; 828 T; 0 other;

fj159267 Length: 2737  11-APR-2009  Type: N  Check: 5006  ..

       1  accggatggc cgcgcgattt ttttaagtgt gggtccagaa cgcaccacga
      51  tgcagactca aagcttagat acgctccttc ggctataagt acttgcgact
     101  aagtttcaat tcaaaaatgt gggatccact attaaacgaa tttccggata
     151  cggtgcacgg gtttcggtgt atgctttctg tcaaatattt gcaactttta
     201  tcgcaggatt attcaccgga tacacttggt tacgagttaa tacgggattt
     251  aatctgtatt ttacgctctc gtaattatgt cgaagcgagc tgccgatatc
     301  gtcatttcta cgcccgcgtc gaaagtacgt cggcgtctga acttcggcag
     351  cccatacacc agccgtgttg ctgcccccat tgtccgcgtc acaaagcaac
     401  aggcatggac aaacagacct atgaacagga agcccagaat gtatcggatg
     451  tacagaagtc cggatgttcc aaggggttgt gagggtccct gtaaggtaca
     501  atcgtttgag tccagacatg atgttgtcca tattggtaag gtgatgtgta
     551  tttctgatgt tacgcgtgga gtcggtttga cccatcgtat tggtaaactt
     601  ttttgtgtca agtcagttta tgttttaggt aagatatgga tggatgaaaa
     651  tataaagacc aagaatcaca cgaattctgt gatgttcttt ttagtccgcg
     701  accgtcttcc tgttgacaaa cctcaggatt ttggtgaggt attcaatatg
     751  tttgacaacg aacccagtac agcaactgtg aagaatagtc atagggatcg
     801  ttaccaggtg ttgaggaaat ggcatgcaac cgtcacgggt ggtcaatatg
     851  tgagtaagga acaggctttg gtcaagaagt ttgtcagagt taacaattat
     901  gttgtttaca accagcagga ggcaggaaaa tacgagaatc acaccgagaa
     951  tgcattgatg ctttatatgg cttgtaccca tgctagtaac ccagtttatg
    1001  ctacgcttaa gattcggatt tatttttatg actctgtaac gaattgaaat
    1051  taataaagtt tgaattttat atctgaatat tggtctacat acattgtttg
    1101  attaattaca ttgtacaata catgttcaac ggctttaata actaaattaa
    1151  gtgagattac accgagattg ttgagatact tgagtacttg ggttttgaat
    1201  acccttaaga aaagaccagt cggagggtgt aaggtcgtcc agattcggaa
    1251  ggttagaaaa cacttgtgca ctcccagagc ttttcgaagg ttgtagttga
    1301  tatggatcct cattgttatg atgtccatgt tcgtcgtgaa tggacggttg
    1351  tcgtggctga ggattttgaa atatagggga tttggaacct cccagataaa
    1401  gacgccatcc gttgaatgag ctgcagtgat gcgttcccct gtgcgagaat
    1451  ccatggttgt ggcagttgat acttaggtaa tagctgcatc cacactcaag
    1501  gtccactcgt ttcctcctgt tgcgcctctt cgcttccctg tgttgaactt
    1551  tgattggtac cggagtagag cggttgggtg agaaagacga atgttgcatt
    1601  ttttaaagcc caggatttta atgctgagtt cttatcctcg tctaagaact
    1651  ctttataact tgcattgggc cctggattgc agaggaagat tgttggtatt
    1701  ccgcctttaa tttgaactgg cttcccgtac tttgtgttgg attgccagtc
    1751  cctttgggcc cccatgaact ctttaaagtg tttgaggtag tgcggatcga
    1801  cgtcatcaat gacgttatac catgcgtcgt tactgtacac ctttgggcta
    1851  agatctaaat gcccacatag atagttgtgt gggcctaaag acctagccca
    1901  catagtcttc ccagtacgac tatctccctc aattactata ctttgaggtc
    1951  taaggggccg cgcagcggcg tcaacaacat tctccgacgc ccactcttca
    2001  agttcttctg gaacttgatc gaaagaagaa gacgaaaaag gagaaacata
    2051  aggagctggt ggctcctgaa agattctgtt taaatttgca tttaaattat
    2101  gaaattgcag tacaaaatct ttaggagcca gttccttaat gactctaata
    2151  gcctccgact tacttcccgc gttaagtgct gcggcgtaag cgtcattggc
    2201  tgtctgttgc cctcctcttg ctgaccttcc gtcgatctga aattgtcccc
    2251  agtcgagaat gtccccgtcc ttctcgatgt aggacttgac gtcggagctg
    2301  gatttagctc cctgtatgtt tggtcggaaa tgtgctgacc agcttgggga
    2351  gaccaagtcg aagaatcgca tattctggca cttgaatttc ccttcgaact
    2401  ggatgagaac tcgcacgcga ggagtcccat cttcgtgaag ctctctgcag
    2451  attctaatat atttttttga agttggggtt tggagattta ataattggga
    2501  aagtgcttcc tctttggtga gagaacattt gggataagtg acgaaatagt
    2551  ctttggaata aataccgtta cgccttggag gcatgttgac tagaattgat
    2601  caccgattga ccgctcttgc aactctctcc tgtatatcgg tgatcaatat
    2651  atagtgatca ccaaatggca taatggtaat aaaacaactt taatttgaaa
    2701  ttcaaaaaaa aatttttgcg gccatccgct taatatt