Sequence of DPV Okra yellow vein mosaic virus
Mesta yellow vein mosaic Bahraich virus-[India:Kaisargunj:2008] segment DNA A, complete sequence.
ACC No: FJ159267
Dated: 2009-04-11 | Length: 2737 | CRC: 1511251851
ID FJ159267; SV 1; circular; genomic DNA; STD; VRL; 2737 BP. XX AC FJ159267; XX DT 28-SEP-2008 (Rel. 97, Created) DT 11-APR-2009 (Rel. 100, Last updated, Version 3) XX DE Mesta yellow vein mosaic Bahraich virus-[India:Kaisargunj:2008] segment DNA DE A, complete sequence. XX KW . XX OS Mesta yellow vein mosaic Bahraich virus-[India:Kaisargunj:2008] OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus; OC unclassified Begomovirus. XX RN [1] RP 1-2737 RA Roy A., Acharyya S., Das S., Ghosh R., Paul S., Srivastavab R.M., RA Ghosh S.K.; RT "Distribution, epidemiology and molecular variability of the begomovirus RT complexes associated with yellow vein mosaic disease of mesta in India"; RL Virus Res. 141(2):237-246(2009). XX RN [2] RP 1-2737 RA Das S., Ghosh R., Acharyya S., Paul S., Palit P., Das A., Roy A., RA Ghosh S.K.; RT ; RL Submitted (25-AUG-2008) to the EMBL/GenBank/DDBJ databases. RL Crop Protection, Central Research Institute for Jute and Allied Fibres, RL Barrackpore, Kolkata, West Bengal 700120, India XX FH Key Location/Qualifiers FH FT source 1. .2737 FT /organism="Mesta yellow vein mosaic Bahraich FT virus-[India:Kaisargunj:2008]" FT /segment="DNA A" FT /host="Hibiscus cannabinus" FT /isolate="Kaisargunj:North India" FT /mol_type="genomic DNA" FT /country="India:North India, Kaisargunj" FT /clone="NI-FL-25" FT /db_xref="taxon:562951" FT gene 117. .482 FT /gene="AV2" FT CDS 117. .482 FT /codon_start=1 FT /gene="AV2" FT /product="pre-coat protein" FT /db_xref="GOA:B6DRT5" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:B6DRT5" FT /protein_id="ACI06047.1" FT /translation="MWDPLLNEFPDTVHGFRCMLSVKYLQLLSQDYSPDTLGYELIRDL FT ICILRSRNYVEASCRYRHFYARVESTSASELRQPIHQPCCCPHCPRHKATGMDKQTYEQ FT EAQNVSDVQKSGCSKGL" FT gene complement(181. .585) FT /gene="AC5" FT CDS complement(181. .585) FT /codon_start=1 FT /gene="AC5" FT /product="AC5 protein" FT /db_xref="InterPro:IPR013671" FT /db_xref="UniProtKB/TrEMBL:B6DRT6" FT /protein_id="ACI06053.1" FT /translation="MGQTDSTRNIRNTHHLTNMDNIMSGLKRLYLTGTLTTPWNIRTSV FT HPIHSGLPVHRSVCPCLLLCDADNGGSNTAGVWAAEVQTPTYFRRGRRNDDIGSSLRHN FT YESVKYRLNPVLTRNQVYPVNNPAIKVANI" FT gene 277. .1047 FT /gene="AV1" FT CDS 277. .1047 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:B6DRT7" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:B6DRT7" FT /protein_id="ACI06048.1" FT /translation="MSKRAADIVISTPASKVRRRLNFGSPYTSRVAAPIVRVTKQQAWT FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGVGLTHR FT IGKLFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRLPVDKPQDFGEVFNMFDNEP FT STATVKNSHRDRYQVLRKWHATVTGGQYVSKEQALVKKFVRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(1050. .1454) FT /gene="AC3" FT /gene_synonym="ren" FT CDS complement(1050. .1454) FT /codon_start=1 FT /gene="AC3" FT /gene_synonym="ren" FT /product="replication enhancer protein" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:B6DRT8" FT /protein_id="ACI06051.1" FT /translation="MDSRTGERITAAHSTDGVFIWEVPNPLYFKILSHDNRPFTTNMDI FT ITMRIHINYNLRKALGVHKCFLTFRIWTTLHPPTGLFLRVFKTQVLKYLNNLGVISLNL FT VIKAVEHVLYNVINQTMYVDQYSDIKFKLY" FT gene complement(1147. .1599) FT /gene="AC2" FT /gene_synonym="trap" FT CDS complement(1147. .1599) FT /codon_start=1 FT /gene="AC2" FT /gene_synonym="trap" FT /product="transcription activator protein" FT /db_xref="GOA:B6DRT9" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:B6DRT9" FT /protein_id="ACI06050.1" FT /translation="MQHSSFSPNRSTPVPIKVQHREAKRRNRRKRVDLECGCSYYLSIN FT CHNHGFSHRGTHHCSSFNGWRLYLGGSKSPIFQNPQPRQPSIHDEHGHHNNEDPYQLQP FT SKSSGSAQVFSNLPNLDDLTPSDWSFLKGIQNPSTQVSQQSRCNLT" FT gene complement(1496. .2584) FT /gene="AC1" FT /gene_synonym="rep" FT CDS complement(1496. .2584) FT /codon_start=1 FT /gene="AC1" FT /gene_synonym="rep" FT /product="replication initiator protein" FT /db_xref="GOA:B6DRU0" FT /db_xref="InterPro:IPR001301" FT /db_xref="UniProtKB/TrEMBL:B6DRU0" FT /protein_id="ACI06049.1" FT /translation="MPPRRNGIYSKDYFVTYPKCSLTKEEALSQLLNLQTPTSKKYIRI FT CRELHEDGTPRVRVLIQFEGKFKCQNMRFFDLVSPSWSAHFRPNIQGAKSSSDVKSYIE FT KDGDILDWGQFQIDGRSARGGQQTANDAYAAALNAGSKSEAIRVIKELAPKDFVLQFHN FT LNANLNRIFQEPPAPYVSPFSSSSFDQVPEELEEWASENVVDAAARPLRPQSIVIEGDS FT RTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQ FT SNTKYGKPVQIKGGIPTIFLCNPGPNASYKEFLDEDKNSALKSWALKNATFVFLTQPLY FT SGTNQSSTQGSEEAQQEETSGP" FT gene complement(2092. .2430) FT /gene="AC4" FT CDS complement(2092. .2430) FT /codon_start=1 FT /gene="AC4" FT /product="regulatory protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:B6DRU1" FT /protein_id="ACI06052.1" FT /translation="MGLLACEFSSSSKGNSSARICDSSTWSPQAGQHISDQTYRELNPA FT PTSSPTSRRTGTFSTGDNFRSTEGQQEEGNRQPMTLTPQHLTREVSRRLLESLRNWLLK FT ILYCNFII" XX SQ Sequence 2737 BP; 718 A; 550 C; 641 G; 828 T; 0 other; fj159267 Length: 2737 11-APR-2009 Type: N Check: 5006 .. 1 accggatggc cgcgcgattt ttttaagtgt gggtccagaa cgcaccacga 51 tgcagactca aagcttagat acgctccttc ggctataagt acttgcgact 101 aagtttcaat tcaaaaatgt gggatccact attaaacgaa tttccggata 151 cggtgcacgg gtttcggtgt atgctttctg tcaaatattt gcaactttta 201 tcgcaggatt attcaccgga tacacttggt tacgagttaa tacgggattt 251 aatctgtatt ttacgctctc gtaattatgt cgaagcgagc tgccgatatc 301 gtcatttcta cgcccgcgtc gaaagtacgt cggcgtctga acttcggcag 351 cccatacacc agccgtgttg ctgcccccat tgtccgcgtc acaaagcaac 401 aggcatggac aaacagacct atgaacagga agcccagaat gtatcggatg 451 tacagaagtc cggatgttcc aaggggttgt gagggtccct gtaaggtaca 501 atcgtttgag tccagacatg atgttgtcca tattggtaag gtgatgtgta 551 tttctgatgt tacgcgtgga gtcggtttga cccatcgtat tggtaaactt 601 ttttgtgtca agtcagttta tgttttaggt aagatatgga tggatgaaaa 651 tataaagacc aagaatcaca cgaattctgt gatgttcttt ttagtccgcg 701 accgtcttcc tgttgacaaa cctcaggatt ttggtgaggt attcaatatg 751 tttgacaacg aacccagtac agcaactgtg aagaatagtc atagggatcg 801 ttaccaggtg ttgaggaaat ggcatgcaac cgtcacgggt ggtcaatatg 851 tgagtaagga acaggctttg gtcaagaagt ttgtcagagt taacaattat 901 gttgtttaca accagcagga ggcaggaaaa tacgagaatc acaccgagaa 951 tgcattgatg ctttatatgg cttgtaccca tgctagtaac ccagtttatg 1001 ctacgcttaa gattcggatt tatttttatg actctgtaac gaattgaaat 1051 taataaagtt tgaattttat atctgaatat tggtctacat acattgtttg 1101 attaattaca ttgtacaata catgttcaac ggctttaata actaaattaa 1151 gtgagattac accgagattg ttgagatact tgagtacttg ggttttgaat 1201 acccttaaga aaagaccagt cggagggtgt aaggtcgtcc agattcggaa 1251 ggttagaaaa cacttgtgca ctcccagagc ttttcgaagg ttgtagttga 1301 tatggatcct cattgttatg atgtccatgt tcgtcgtgaa tggacggttg 1351 tcgtggctga ggattttgaa atatagggga tttggaacct cccagataaa 1401 gacgccatcc gttgaatgag ctgcagtgat gcgttcccct gtgcgagaat 1451 ccatggttgt ggcagttgat acttaggtaa tagctgcatc cacactcaag 1501 gtccactcgt ttcctcctgt tgcgcctctt cgcttccctg tgttgaactt 1551 tgattggtac cggagtagag cggttgggtg agaaagacga atgttgcatt 1601 ttttaaagcc caggatttta atgctgagtt cttatcctcg tctaagaact 1651 ctttataact tgcattgggc cctggattgc agaggaagat tgttggtatt 1701 ccgcctttaa tttgaactgg cttcccgtac tttgtgttgg attgccagtc 1751 cctttgggcc cccatgaact ctttaaagtg tttgaggtag tgcggatcga 1801 cgtcatcaat gacgttatac catgcgtcgt tactgtacac ctttgggcta 1851 agatctaaat gcccacatag atagttgtgt gggcctaaag acctagccca 1901 catagtcttc ccagtacgac tatctccctc aattactata ctttgaggtc 1951 taaggggccg cgcagcggcg tcaacaacat tctccgacgc ccactcttca 2001 agttcttctg gaacttgatc gaaagaagaa gacgaaaaag gagaaacata 2051 aggagctggt ggctcctgaa agattctgtt taaatttgca tttaaattat 2101 gaaattgcag tacaaaatct ttaggagcca gttccttaat gactctaata 2151 gcctccgact tacttcccgc gttaagtgct gcggcgtaag cgtcattggc 2201 tgtctgttgc cctcctcttg ctgaccttcc gtcgatctga aattgtcccc 2251 agtcgagaat gtccccgtcc ttctcgatgt aggacttgac gtcggagctg 2301 gatttagctc cctgtatgtt tggtcggaaa tgtgctgacc agcttgggga 2351 gaccaagtcg aagaatcgca tattctggca cttgaatttc ccttcgaact 2401 ggatgagaac tcgcacgcga ggagtcccat cttcgtgaag ctctctgcag 2451 attctaatat atttttttga agttggggtt tggagattta ataattggga 2501 aagtgcttcc tctttggtga gagaacattt gggataagtg acgaaatagt 2551 ctttggaata aataccgtta cgccttggag gcatgttgac tagaattgat 2601 caccgattga ccgctcttgc aactctctcc tgtatatcgg tgatcaatat 2651 atagtgatca ccaaatggca taatggtaat aaaacaactt taatttgaaa 2701 ttcaaaaaaa aatttttgcg gccatccgct taatatt