Sequence of DPV Citrus tristeza virus
Citrus tristeza virus isolate Serdang D6 25 kDa coat protein, 18 kDa protein, 13 kDa protein, 20 kDa protein, and 23 kDa protein genes, complete cds.
ACC No: FJ190074
Dated: 2008-10-14 | Length: 3124 | CRC: 131917684
ID FJ190074; SV 1; linear; genomic RNA; STD; VRL; 3124 BP.
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AC FJ190074; EU523134; EU530634;
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DT 14-OCT-2008 (Rel. 97, Created)
DT 14-OCT-2008 (Rel. 97, Last updated, Version 1)
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DE Citrus tristeza virus isolate Serdang D6 25 kDa coat protein, 18 kDa
DE protein, 13 kDa protein, 20 kDa protein, and 23 kDa protein genes, complete
DE cds.
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KW .
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OS Citrus tristeza virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae;
OC Closterovirus.
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RN [1]
RP 1-3124
RA Razean Haireen M.R., Habibuddin H., Nuradni H.;
RT "An Assessment on the Prevalence of Citrus Tristeza Virus Infection in an
RT Orchard Farm at Serdang Selangor, Malaysia";
RL Unpublished.
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RN [2]
RP 1-3124
RA Razean Haireen M.R., Habibuddin H.;
RT ;
RL Submitted (27-FEB-2008) to the EMBL/GenBank/DDBJ databases.
RL Strategic Resource Research Centre, Malaysian Agricultural Research and
RL Development Institute, P.O. Box 12301, Pejabat Besar Pos, Kuala Lumpur,
RL Selangor 50774, Malaysia
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RN [3]
RP 1-3124
RA Razean Haireen M.R., Habibuddin H., Nuradni H.;
RT ;
RL Submitted (29-FEB-2008) to the EMBL/GenBank/DDBJ databases.
RL Strategic Resource Research Centre, Malaysian Agricultural Research and
RL Development Institute, P.O. Box 12301, Pejabat Besar Pos, Kuala Lumpur,
RL Selangor 50774, Malaysia
XX
RN [4]
RC Sequence update by submitter
RP 1-3124
RA Razean Haireen M.R., Habibuddin H., Nuradni H.;
RT ;
RL Submitted (08-SEP-2008) to the EMBL/GenBank/DDBJ databases.
RL Strategic Resource Research Centre, Malaysian Agricultural Research and
RL Development Institute, P.O. Box 12301, Pejabat Besar Pos, Kuala Lumpur,
RL Selangor 50774, Malaysia
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CC On or before Oct 13, 2008 this sequence version replaced
CC gi:170522700, gi:169870318.
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FH Key Location/Qualifiers
FH
FT source 1. .3124
FT /organism="Citrus tristeza virus"
FT /specific_host="Citrus hystrix"
FT /isolate="Serdang D6"
FT /mol_type="genomic RNA"
FT /country="Malaysia"
FT /collection_date="13-Jun-2007"
FT /db_xref="taxon:12162"
FT CDS 1. .672
FT /codon_start=1
FT /product="25 kDa coat protein"
FT /protein_id="ACB20638.1"
FT /translation="MDDETKKLKNKNKETKEVDDVVAAESSFGSVNLHIDPTLIAMNDV
FT RQLGTQQNAALNRDLFLTLKGKYPNLPDKDKDFHLAMMLYRLAVKSSSLQSDDDTTGMT
FT YTREGVEVELSDKLWTDVVFNFKGIGNRTNALRVWGRTNDALYLAFCRQNRNLSYGGRP
FT LDAGIPAGYHYLCADFLTGAGLTDLECAVYIQAKEQLLKKRGADEVIVTNVRQLGKFNT
FT R"
FT CDS 638. .1141
FT /codon_start=1
FT /product="18 kDa protein"
FT /note="p18"
FT /protein_id="ACA96934.1"
FT /translation="MSGSLGNLTHVDLLRSESRFLSGWWSFIVNVGDIIVRFALHVPNE
FT DMLNSFSAISNCTIIADGSALLKDNTVVDRLENMNPLAYLLKLAKTTTTICFTMSNKVL
FT FGTTKSEPLSCLAITSDRVLFKVILGTNVDDSRCGCSIWFYNNGTYQNGLIRCNNLVAL
FT FSTT"
FT CDS 1175. .1534
FT /codon_start=1
FT /product="13 kDa protein"
FT /note="p13"
FT /protein_id="ACI40922.1"
FT /translation="MSIRRVWLKVVAVITVLWYGKEPSISEGYNALMNDDFKFIDTHFS
FT NVSYAKKCYDLANFDLDFLRVVVIPLSGSTANESRADRANISEIVESHVSDRDRMNILL
FT RNKRIQIPSLLPCGN"
FT CDS 1610. .2158
FT /codon_start=1
FT /product="20 kDa protein"
FT /note="p20"
FT /protein_id="ACI40923.1"
FT /translation="MRAYFSVNDYISLLAKVGAVVERLCDPGVTLTEVMDEINDFNSFL
FT ALVHSMKSDMNGDHQDGHHEMGEHKSRLLCNIEARLRVLLDVIRRRFTREKLLCTSATD
FT VMGFFVMRYMSSSHTSFESVMRTELKLVVKVVLSDLSRTHKLDFSERAFAAYGILLQKG
FT TVSTVCGQFDINLVSPSCV"
FT CDS 2240. .2869
FT /codon_start=1
FT /product="23 kDa protein"
FT /note="p23"
FT /protein_id="ACI40924.1"
FT /translation="MDNTSGQIFVSVNLSDESNTASTEVKTVSSEADRLEFLQKLNPFI
FT IDALIRKTSYQGARFRARIIGVCVDCGRKHNKGLKNERKCKVNNTQSQNEVAHMLLHDP
FT VKYLKKGKARAFSNAEMFAIDLVMYTKERQLAVDLAAEREKTRLARRHPMRSPEETPEH
FT YKFGATAEAISPDINAVDVGDNEDTSSEYPVSLSVSGGVPREHHFI"
FT 3'UTR 2870. .3124
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SQ Sequence 3124 BP; 869 A; 583 C; 753 G; 919 T; 0 other;
fj190074 Length: 3124 14-OCT-2008 Type: N Check: 6602 ..
1 atggacgacg aaacaaagaa attgaagaac aaaaacaagg aaacgaaaga
51 agtcgacgat gttgttgcag ctgaatcttc tttcggttcc gtaaacttac
101 acatcgatcc gactctgata gcgatgaacg atgtgcgtca gttgggtacc
151 caacagaacg ctgctttgaa tagagatttg tttcttacct tgaaagggaa
201 gtatcctaac ttacctgaca aagataaaga ctttcactta gctatgatgt
251 tatatcgttt agcagttaag agttcatcat tacaaagcga cgatgatacc
301 acgggtatga cgtacactcg ggaaggtgtt gaagtggaat tatctgacaa
351 actttggaca gacgtcgtgt ttaactttaa gggtattggt aaccgtacaa
401 acgcccttcg agtctggggt agaactaacg atgcccttta tttggctttt
451 tgtagacaga accgcaactt gagttatggt ggacgtccgt tagacgcagg
501 aattccagcc gggtatcact acctgtgtgc agatttcttg accggagctg
551 gcttgactga tttagaatgt gctgtgtaca tacaagctaa agagcaatta
601 ttaaagaagc gaggggctga tgaagtcata gttactaatg tcaggcagct
651 tgggaaattt aacacacgtt gatctgttgc gttccgaatc ccggtttctg
701 tcgggatggt ggagtttcat cgttaacgta ggtgatataa tcgtccggtt
751 tgcgttacac gttcctaatg aagatatgct gaatagcttt tcagctatat
801 cgaattgtac gatcattgca gatggtagtg ctttactaaa agacaatacc
851 gtggttgatc gtttagaaaa catgaatcct ttggcttatt tgttaaaatt
901 agcgaaaacg actactacta tttgttttac catgtctaat aaggttcttt
951 ttggtactac taaatccgaa ccacttagtt gtttagctat cacgtcagat
1001 cgagttctat tcaaagttat tttgggtact aacgttgatg attctcgatg
1051 cggctgcagt atttggtttt acaacaacgg tacctatcaa aacggtttga
1101 tccgttgtaa taatctcgtc gctttgttta gcacgactta gacacgaagt
1151 ggccgttagg atttaattgc tgcaatgagt attcgacgtg tgtggttaaa
1201 ggttgtggct gtaatcacgg tattatggta cggtaaggaa ccttctatta
1251 gtgaaggtta caacgctctt atgaatgatg actttaagtt tatcgacacg
1301 catttttcaa acgtttctta tgctaagaaa tgttacgatt tggctaattt
1351 cgatttagac tttctacgcg tcgttgtcat tcctttaagt ggtagtacgg
1401 cgaatgaatc gcgtgctgat cgcgctaata tttcagaaat tgtcgaatcg
1451 catgtaagcg accgagacag aatgaacatt ttgttgcgta acaagcggat
1501 ccaaatccca tcgctcttac cttgcggtaa ctagagtcta ctcagtagta
1551 cgtctactag tataacgtac tgaacacttt agtaaaggat tttgttcgaa
1601 ctaaacaata tgcgagctta ctttagtgtt aacgattaca taagcctttt
1651 ggctaaggtt ggcgcagtcg tggaacgttt gtgcgatccc ggcgtaactc
1701 tcacggaagt gatggacgaa attaatgact ttaactcgtt cctcgctttg
1751 gtgcactcta tgaagtcaga catgaatgga gaccatcagg atggtcacca
1801 tgagatgggt gaacacaagt ctcggttgtt atgcaacata gaggcgagat
1851 tgcgagtgct tctcgacgtc ataagacgtc ggtttactcg cgaaaagctg
1901 ctctgtacca gcgcgacaga tgtcatgggc ttctttgtta tgaggtacat
1951 gagttccagc cacaccagct tcgagtcagt aatgagaacg gagttgaagt
2001 tagtagttaa ggtggtactg tcggatttgt cccgcacgca taaactggat
2051 tttagcgagc gagcttttgc ggcttatggt atccttttgc aaaagggtac
2101 tgtgtcgacc gtttgcggtc agtttgatat taatttagtc tctccgtctt
2151 gtgtgtaggt taatacgttt ctcagaacgt gtagttgtat taactaactt
2201 taattcgaac aagcttattg taaaagtctg cgagttacga tggataatac
2251 tagcggacaa attttcgttt ctgtgaacct ttccgacgaa agtaacacag
2301 cgagtactga agttaaaacc gtaagttcgg aagcggatcg cttggaattt
2351 ttacaaaaat taaatccctt tattatcgac gctttgatac ggaaaaccag
2401 ttatcagggt gctcgctttc gcgccagaat aataggagtg tgcgtggatt
2451 gtggtagaaa acacaacaag gggttgaaaa acgaacgtaa gtgtaaggtc
2501 aacaatacac agtctcagaa cgaggtggcg catatgttat tgcacgatcc
2551 cgttaagtat ttaaagaaag gaaaggctag agccttttct aacgcagaga
2601 tgtttgcgat cgatttggtt atgtacacca aggaaaggca attggcggtt
2651 gatttagccg ctgaaaggga gaagacgaga ctggctcgta gacacccaat
2701 gcgttctccg gaagaaactc cggaacatta taaattcggt gcgactgctg
2751 aggcaatttc gccggacatc aacgccgtag acgttggtga taacgaggac
2801 acttcgtcgg agtacccagt gagtctgagt gtatctggcg gagttccccg
2851 tgaacaccac ttcatctgat tgaagtggac ggaataagtt ctttacggaa
2901 ctttatgtcg ggttggtaaa aacccttatg atggtgatat atcactagac
2951 aataaccgga tgggtaaagt ctttaaaatg atcgagggga aaattaaccg
3001 tatcctctcg ttggtctaag ctcccacaga gtggtagtgg tctcaagtga
3051 ggcttaacgt atgcgtgaac caaagaagtt ctccttagag tgtgtgttgt
3101 ttacccaacg cactgtccct atgg