Sequence of DPV Pepino mosaic virus
Pepino mosaic virus, complete genome.
ACC No: FJ212288
Dated: 2009-06-18 | Length: 6440 | CRC: -141498844
ID FJ212288; SV 1; linear; genomic RNA; STD; VRL; 6440 BP.
XX
AC FJ212288;
XX
DT 14-OCT-2008 (Rel. 97, Created)
DT 18-JUN-2009 (Rel. 101, Last updated, Version 2)
XX
DE Pepino mosaic virus, complete genome.
XX
KW .
XX
OS Pepino mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Flexiviridae;
OC Potexvirus.
XX
RN [1]
RP 1-6440
RA Adams I.P., Glover R.H., Monger W.A., Mumford R., Jackeviciene E.,
RA Navalinskiene M., Samuitiene M., Boonham N.;
RT "Next-generation sequencing and metagenomic analysis: a universal
RT diagnostic tool in plant virology";
RL Mol. Plant Pathol. 10(4):537-545(2009).
XX
RN [2]
RP 1-6440
RA Adams I.P., Glover R., Monger W.A., Mumford R., Boonham N.;
RT ;
RL Submitted (15-SEP-2008) to the EMBL/GenBank/DDBJ databases.
RL Plant Health, Central Science Laboratory, Sand Hutton, York YO41 1LZ, UK
XX
FH Key Location/Qualifiers
FH
FT source 1. .6440
FT /organism="Pepino mosaic virus"
FT /host="tomato"
FT /mol_type="genomic RNA"
FT /isolation_source="tomato leaf"
FT /db_xref="taxon:112229"
FT CDS 85. .4401
FT /codon_start=1
FT /product="RNA dependent RNA polymerase"
FT /db_xref="GOA:B6E641"
FT /db_xref="InterPro:IPR018308"
FT /db_xref="UniProtKB/TrEMBL:B6E641"
FT /protein_id="ACI26675.1"
FT /translation="MSRVRNTLEKIRDPQVQSSICEAAYQHVRPVLKESLINCPYALND
FT YEADTLENLGVTINPHAIQTHTHAAAKVVENRMLEIVGHHLPKDEKVTFIFLKRSKLRY
FT MRRAAVHKDVFVNHNIEPKDFFRYDEESTSTSFSVNTRIAYISDSLHFMEPADVTHLFD
FT RCHNLKTLMATVVLPVEAIHKQTSLFPAIYSINYNEEGFEYIPGSHGGGAYFHKYETLD
FT WLKYSRFIGQDPLTGLRYTITIQMVESLGANHLFLFQRGNFETPLYRTFQKNSFVTFPN
FT IFHPQHVNATKPMPRSRAIQLYLYVKSVNKVTQRDIFAKVRQLISTAELELYDPDELTH
FT IVNYFAYVSELSSINDYDNMLKSSFFKKLVAPMQHDWRCMIEFFRGKSDFNQLLTALQW
FT KDFSYTIKTEELVIATHTEIGQAICKAATTYKERRQLTNLVKQGAVTLADFKEADQHVE
FT YTHFDPEFKSTVEPHRSYENAINNLGIEINEDVPESSGTNETLLNNEISLAMSSAEHVQ
FT AVQEIESLLSNHEAAPILPPAHVKTWASLASDTSSTKNREIEDIVAKLEIQRNEASCSY
FT LQPNKELSKPKAAGNNLPWNAWIPLLNAHGFKGDQLQYGPDGNLIQPIQDINNSQPRSD
FT YPSSLPCELVETLRKIKRAVYAIPISHRRASAYSSDIKNNRTGKLLCNQSKEWKESFAF
FT KMQHEDIVKSGVVIHGCGGSGKSQALQNFLRTLGDSNDCCTVVVPTVELRNDWVNKLHK
FT LPMEHIKTFEKAMIQPGFPIVIFDDYTKLPPGYIEAYLFHHANTELFILTGDSRQSVYH
FT ESNNEAYIASLDEAVAYYANYCGFYLNATHRNVRSLANKLGVYSEKEGHLKITFASHAL
FT QKCKVPILVPSQMKKSAMLDIGHKSMTYAGCQGLTAPKVQILLDNHTQHCSDRVLYTCL
FT SRAVDSIHFINTGPNNSEFWDKLEATPYLKAFIDVYRDEKTEMLNSKPADDSPTEPEAP
FT VTHFPIANGNNLEKLASALPEKFAREIYDKHHGHSNTIQTENPVVQLFQHQQAKDETLF
FT WATIEARLSITTPEANLREFLLKKDVGDILFFNYHNAMCLPADPVDFEEKTWEICAAEV
FT KNTYLAKPMANLINAASRQSPDFDSNKISLFLKSQWVKKVEKLGAIKSKPGQTIAAFMQ
FT QTVMLYGTMARYLRKMRQRFQPKHIFINCETTTDDLNKFVKDGWNFNRTAQTNDFTAFD
FT QSQDGAMLQFEVMKAKFFNIPADVIEGYINIKLNAKIFLGTLSIMRLSGEGPTFDANTE
FT CSIAYTATRFHIDNTVKQVYAGDDMALDGVVSEKKSFRKLQNLLKLTSKTLYPKQVKGD
FT YAEFCGWTFTPGGIIKNPLKMHASIMLQEAIGNLHTAARSYAIDMKHSYQMGDQLHDYL
FT TPDEAEQHFLAVRKLHKLHQGEAMRLGEKSPPRSTH"
FT CDS 4427. .5131
FT /codon_start=1
FT /product="TGB1"
FT /db_xref="GOA:Q334F6"
FT /db_xref="InterPro:IPR000606"
FT /db_xref="UniProtKB/TrEMBL:Q334F6"
FT /protein_id="ACI26676.1"
FT /translation="MERSTLINLLLLHKFEHKINTEGIIVVHGIAGTGKTTLLRTLFSA
FT YPSLVIGSPRPCYLDKANKISQVCLSCFPNTLCDIVDEYHLLESFPEPKLAIFGDPCQC
FT TYIERLRTPNYTSFRTHRFGKSTAALLNKLFDLNIESVKAQDDTVEYFDPFAVDPSEHI
FT SASEKEVLEFVGDQVETTSSEELAGLEFSEVTFYCTTLAGAVQENPAKTFISLTRHTSK
FT LTIGELNARSDS"
FT CDS 5112. .5483
FT /codon_start=1
FT /product="TGB2"
FT /db_xref="InterPro:IPR001896"
FT /db_xref="UniProtKB/TrEMBL:Q699Z7"
FT /protein_id="ACI26677.1"
FT /translation="MPGLTPRADLTDTYKIIAIAFLLSACIYFQNSHYQPVAGDNLHRL
FT PFGGQYQDGTKKISYFPQQQSYFHSGNKLNVLILIFILTLGIVLTNKFSFSISRNTHQH
FT HCYNTHSATQTGQSVPGHH"
FT CDS 5335. .5583
FT /codon_start=1
FT /product="TGB3"
FT /db_xref="InterPro:IPR003411"
FT /db_xref="UniProtKB/TrEMBL:B6E644"
FT /protein_id="ACI26678.1"
FT /translation="MSSYLSSFLHWVLSSPINLVLVLAVILTSIIATTHILQPKQVNQC
FT QVIIDGAAIVITNCPNTPEVLKAINFSPWNGLSFPQL"
FT CDS 5629. .6342
FT /codon_start=1
FT /product="coat protein"
FT /db_xref="GOA:B6E645"
FT /db_xref="InterPro:IPR000052"
FT /db_xref="UniProtKB/TrEMBL:B6E645"
FT /protein_id="ACI26679.1"
FT /translation="MENQPTASNSSDAPPTAAQAGAQSPADFSNPNTAPSLSDLKKIKY
FT VSTVTSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN
FT PALSRRALAAQFDRINITPRQFCMYFAKIVWNILLDSNVPPANWAKLGYQEDTKFAAFD
FT FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM
FT GGANTMYAIDAPPEL"
XX
SQ Sequence 6440 BP; 2090 A; 1451 C; 1154 G; 1745 T; 0 other;
fj212288 Length: 6440 18-JUN-2009 Type: N Check: 8809 ..
1 aaaacaaaac ataacacata atatcaaaag tgactaaaca caacataacc
51 acgtggaaaa acagcgaaag cactttacca cattatgtct cgtgttagaa
101 acactttaga aaagatcagg gacccacaag tacaatctag catttgtgaa
151 gccgcttacc aacatgttag acctgtgctc aaagaatccc taatcaactg
201 tccttatgcg cttaatgact atgaagcaga cactcttgag aatttaggtg
251 tcacaataaa cccccatgca atccaaacac atactcatgc ggcagctaaa
301 gttgtggaaa atagaatgct cgaaattgtt ggacaccact tgcccaagga
351 cgagaaagtt actttcattt tcctcaaaag aagcaaactg agatacatgc
401 gaagagctgc tgtacataaa gatgtttttg ttaatcacaa tatagaaccc
451 aaggatttct tcaggtatga tgaggaatct acatctacta gtttctctgt
501 gaacaccagg atcgcttaca tctccgattc tctacatttc atggaaccag
551 ctgatgtgac ccacctcttt gaccgttgcc acaatcttaa aacactgatg
601 gcaactgtcg ttttacctgt tgaagccatc cacaaacaaa catctttatt
651 tccagcgata tactccatta attacaatga agaaggtttt gagtatatcc
701 ctggttctca tggtggaggg gcatactttc ataagtatga aacattagac
751 tggctcaaat actctagatt cattggccag gaccccttaa ctggactccg
801 atacaccata accattcaaa tggtggagag tttaggagcc aaccatcttt
851 tcctcttcca acgaggaaat tttgaaacac ctttatacag gacgtttcaa
901 aaaaatagct ttgtgacctt tcctaacatc ttccatcccc aacatgttaa
951 tgccacaaag cccatgccaa gatccagggc aattcagctg tatttatatg
1001 tcaaatctgt caataaggtg acacaaagag atatctttgc gaaagtaagg
1051 caacttatat ccacagctga acttgaattg tatgaccctg atgaacttac
1101 acatattgtc aattattttg catatgtctc agaactaagc tcaatcaacg
1151 actatgacaa tatgctcaaa tcaagttttt tcaaaaaact tgttgcaccc
1201 atgcaacatg actggaggtg catgattgaa ttctttcggg gaaaaagtga
1251 tttcaatcaa cttttaactg ctcttcaatg gaaagacttc tcttacacca
1301 ttaaaactga agagttagtt attgctacac acactgaaat tggccaggca
1351 atctgtaaag ctgcgaccac atacaaagaa agaagacaat tgaccaattt
1401 agtcaaacaa ggcgcagtaa cattagctga tttcaaagaa gcggaccagc
1451 atgtggagta cactcacttt gatcctgagt ttaaatccac tgttgaaccc
1501 caccggagct atgaaaatgc catcaacaat cttggcattg agattaatga
1551 ggatgtacct gaaagttccg gcactaatga aacattgctt aacaatgaaa
1601 tatctttagc aatgtcatct gctgaacatg tgcaagctgt tcaagaaatt
1651 gagtctttac tctctaacca cgaagcggca ccaatattgc cccctgcaca
1701 tgttaaaaca tgggctagcc ttgcatctga cacttccagt actaaaaacc
1751 gtgaaatcga agatatagtg gctaagctgg aaatacaaag aaatgaagct
1801 agttgcagct accttcaacc aaataaggaa ttgtcaaaac ccaaagctgc
1851 tggtaacaat ctcccctgga atgcttggat cccattgctt aatgcacacg
1901 gcttcaaagg agatcaatta caatacggcc cagatggtaa cttgatacag
1951 cccatccaag acattaacaa ttcacagcct agatctgact atccgtcttc
2001 tctgccatgt gaacttgtgg aaactttgag gaaaattaag cgtgctgtct
2051 atgccatccc aataagccac aggagggcta gtgcttacag ttctgacatc
2101 aaaaataaca gaactggcaa acttctctgc aaccaaagca aagaatggaa
2151 agaaagcttt gctttcaaaa tgcaacatga agacatcgtc aaatcaggtg
2201 ttgtcataca tggttgcgga ggttctggca aatcccaggc attacaaaac
2251 ttcttgagaa cattgggtga ttcaaatgat tgctgtactg ttgtagtacc
2301 cactgttgaa cttagaaatg actgggtaaa caaactccat aaattgccca
2351 tggagcatat caaaacgttt gagaaagcaa tgattcaacc tggctttcca
2401 attgttatat ttgatgatta caccaagttg ccacctggtt acattgaagc
2451 atacctattt caccatgcca acactgagct ttttatactt actggcgatt
2501 ctaggcaaag cgtgtaccac gaatctaaca atgaagcgta cattgcctca
2551 ttagatgaag ctgttgcata ctacgctaat tactgcggtt tttatttaaa
2601 tgctactcat agaaatgtcc gtagtttagc caacaaactt ggtgtttaca
2651 gtgagaaaga aggacacctg aaaatcactt ttgcttcaca tgcattacaa
2701 aagtgcaaag tgccaatttt agttccttct caaatgaaaa agagtgctat
2751 gttagacatt ggacataaat ccatgaccta tgctggttgc caaggtttaa
2801 cagcacccaa ggtacaaatt ctccttgata accacacgca acattgctct
2851 gacagagttc tgtacacctg tctgtctcgt gcagttgatt ccatccactt
2901 catcaatact ggccccaaca attcagaatt ttgggataag cttgaagcaa
2951 caccatatct caaagccttc attgatgtct atagagatga aaaaactgaa
3001 atgctcaatt ctaagcctgc tgacgacagt ccaactgagc ctgaagcacc
3051 tgttacacat ttcccaatag caaatggaaa taacttagag aaattagctt
3101 ctgctttgcc tgaaaaattt gctagggaaa tttatgacaa gcatcatggc
3151 cactccaaca caatccaaac tgagaatcct gtggtccaac ttttccaaca
3201 tcaacaagcg aaagacgaga cactcttttg ggctacaatt gaagctagat
3251 tgtccataac aactcctgaa gcaaacctca gagaattttt gcttaagaaa
3301 gatgttggag acattctctt cttcaattac cataatgcga tgtgcttgcc
3351 tgctgatcct gttgactttg aagaaaagac ctgggagatc tgtgctgctg
3401 aagtgaaaaa cacttatctt gccaaaccca tggccaatct tatcaatgct
3451 gcaagtagac aatcacccga ctttgactct aataagatct cattattcct
3501 aaagtctcaa tgggtgaaaa aagtggaaaa acttggagct atcaaatcaa
3551 aacctggtca gaccatagct gcttttatgc aacaaacagt catgttgtat
3601 ggtactatgg ccaggtactt aaggaaaatg cggcaaagat tccagccaaa
3651 acacatattc atcaattgtg aaaccacaac tgatgatctc aataaatttg
3701 tcaaagatgg ctggaacttt aacagaaccg cccaaacaaa tgacttcact
3751 gcttttgatc agtcacaaga tggagcaatg cttcaatttg aagtcatgaa
3801 agcaaaattt tttaacattc cagctgatgt cattgaaggc tacatcaaca
3851 tcaagctgaa tgctaaaatt ttccttggaa cactctcaat aatgagactt
3901 tctggtgaag gtcccacatt tgacgctaac actgagtgtt cgattgcata
3951 cactgccaca agattccata ttgacaatac tgttaagcaa gtgtatgccg
4001 gtgacgacat ggcattagat ggagttgtga gtgaaaagaa gtcgttcagg
4051 aagttacaaa atctactaaa actcacttca aaaacgctgt acccaaaaca
4101 ggttaaaggg gattacgctg aattttgtgg ttggactttc acaccagggg
4151 gtataattaa aaatccactt aaaatgcatg cctcaattat gctgcaagaa
4201 gccattggca atctgcacac agcagccaga tcttatgcaa ttgacatgaa
4251 gcattcatac caaatgggtg accaactgca tgactaccta acccccgatg
4301 aagctgaaca acatttccta gctgtgagaa agcttcacaa actccatcaa
4351 ggcgaggcca tgcgtcttgg ggagaaaagt ccaccaagat caacccatta
4401 aggggttaag ttttccccag tttgaaatgg aaagatcaac tttgatcaat
4451 ttacttctgt tacacaaatt tgaacacaag attaacactg aaggaatcat
4501 tgttgtgcac ggaattgctg gaactgggaa aaccacattg cttaggactt
4551 tattttctgc ataccctagc ttagttatag gttcacctag gccttgttac
4601 ttagataaag ctaataaaat ttcacaagtt tgcctttctt gttttccaaa
4651 taccttgtgt gacattgttg acgagtacca tctcttagaa agttttcctg
4701 aaccaaaact agccattttt ggtgacccct gtcagtgcac ttacattgaa
4751 aggttgagaa cacccaacta cacatccttc agaacacacc gatttggcaa
4801 atccactgct gctctactaa acaagttatt tgatcttaac attgagtcag
4851 tcaaagcaca agacgacaca gtagaatact ttgatccttt cgcagtggac
4901 ccctctgaac acatttctgc ttcagaaaaa gaagttttgg aatttgtagg
4951 tgatcaagtt gagactacaa gctctgaaga actagctggt ctagagttta
5001 gtgaagttac tttctactgt accacacttg ctggtgctgt ccaagaaaat
5051 cctgccaaaa ccttcatttc actcactaga cacacttcaa agctcacaat
5101 tggtgaacta aatgccaggt ctgactccta gagctgatct tactgacacg
5151 tacaaaatca ttgctatagc ctttctactg tcagcttgca tttacttcca
5201 aaacagtcat tatcaaccag ttgcaggtga taatttgcac agactaccct
5251 ttggtggtca gtatcaagac ggaactaaga agatttctta ctttccgcag
5301 caacaatcct actttcactc aggaaacaag cttaatgtcc tcatacttat
5351 cttcattctt acactgggta ttgtcctcac caataaattt agttttagta
5401 ttagccgtaa tactcaccag catcattgct acaacacaca ttctgcaacc
5451 caaacaggtc aatcagtgcc aggtcatcat tgacggtgca gccatagtta
5501 taacaaattg tccaaacaca cccgaagttc ttaaagcaat caacttctcc
5551 ccttggaacg ggttaagttt tcctcaattg tgaaatcata tttgttatct
5601 agttaaattc aaacaattta actcaactat ggaaaaccaa cctacagctt
5651 ctaactcatc agatgcacca ccaactgctg ctcaagctgg tgcccagagc
5701 ccagccgact tctcaaatcc taatacagct ccttccctaa gtgatttgaa
5751 gaagatcaaa tacgtgtcaa ctgtcacttc agttgccacg cctgctgaaa
5801 ttgaggccct tggcaagatc tttactgcca tgggtttagc agccaatgag
5851 accggacctg ccatgtggga cctcgctcgt gcttatgctg atgtgcaaag
5901 ttcaaaatct gcacaactta taggtgccac accatccaac cctgctttgt
5951 ctagacgtgc acttgctgca cagtttgatc gtatcaatat cacacccaga
6001 caattctgca tgtattttgc aaaaattgtt tggaacatac tgttagacag
6051 caatgtgcca cctgccaact gggcaaaatt gggctatcag gaagatacca
6101 agtttgctgc tttcgacttc tttgatggag tcacaaatcc agctagtcta
6151 cagcctgcag atggcctaat caggcagccc aatgaaaaag agcttgctgc
6201 tcactcggtt gctaaatatg gtgcccttgc ccgccagaaa atatccactg
6251 gtaactacat caccaccctt ggtgaagtta cacgtggtca catgggcggc
6301 gccaacacta tgtacgcaat tgatgcacct cctgaacttt aaacactcga
6351 aacttaatca gagtggggtt ttctatagtt tattttccct tagtataaaa
6401 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa