Sequence of DPV Mamastrovirus 6
Astrovirus MLB1, complete genome.
ACC No: FJ222451
Dated: 2008-10-21 | Length: 6171 | CRC: 1228573473
ID FJ222451; SV 1; linear; genomic RNA; STD; VRL; 6171 BP.
XX
AC FJ222451;
XX
DT 21-OCT-2008 (Rel. 97, Created)
DT 21-OCT-2008 (Rel. 97, Last updated, Version 1)
XX
DE Astrovirus MLB1, complete genome.
XX
KW .
XX
OS Astrovirus MLB1
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Astroviridae;
OC unclassified Astroviridae.
XX
RN [1]
RP 1-6171
RX PUBMED; 18854035.
RA Finkbeiner S.R., Kirkwood C.D., Wang D.;
RT "Complete genome sequence of a highly divergent astrovirus isolated from a
RT child with acute diarrhea";
RL (er) Virol. J. 5 (1), 117 (2008)
XX
RN [2]
RP 1-6171
RA Finkbeiner S.R., Kirkwood C.D., Wang D.;
RT ;
RL Submitted (18-SEP-2008) to the EMBL/GenBank/DDBJ databases.
RL Molecular Microbiology and Pathology, Washington University School of
RL Medicine, 4940 Parkview Place, Campus Box 8230, Saint Louis, MO 63110, USA
XX
FH Key Location/Qualifiers
FH
FT source 1. .6171
FT /organism="Astrovirus MLB1"
FT /isolate="MLB1"
FT /mol_type="genomic RNA"
FT /country="Australia"
FT /isolation_source="stool"
FT /collection_date="06-Oct-1999"
FT /db_xref="taxon:568715"
FT 5'UTR 1. .14
FT CDS 15. .2378
FT /codon_start=1
FT /product="ORF1a"
FT /note="putative serine protease"
FT /protein_id="ACI62173.1"
FT /translation="MAVPFHIGVSDKVMNLGSARSREWLNELPSTALNQLRDIFPFEVP
FT INTMIVPKSRYQLGTGVTLAVQGMVTLGCYSTYALDGEAWIEVDETRIDPKCAYVGTMA
FT LDRVKLMDRNKELQLDNASMSVDLQLTRHELERCRPTIIRPQRYGNFALFVLFFFLFFI
FT LGTKAEDWHDQTQDYLVEFLKEAKQEIVSNLDTYYSLLLHVVRWEVVSCIIAIVSFFKL
FT KRPCVAIIGLFLATISRYNYAALSIVPFLDVYSTVFLYTTMVVYFLVPHVAIITSLVCA
FT LLFTIVSMVCAHHQFIIRVRGDWLVVLITIATYICDVMGIHTTAIAIAASLVRIYMCFP
FT AANASVVEIKDSAGKVVQKTTLLPNWIGSMYQGARNMLQKVRTGVATFVRVNPNCLCHI
FT RSEGCSGTGFRLGNDIVTAAHVVGNAVQVEVVYNNYVAQAKVRHIPDKDIAYLILPEGL
FT KTMPVLKLAKNPNYEQVTIIALEGNCMLVSTTEGVCHGETISYACATRDGMSGAPVLDV
FT NGNVLGVHQTNTGYTGGATVIRATDAAPYIDENAALKKEIEELKKMLREQTMNQRSVQD
FT NEVVGIVRAAVQREIGILRDELNSCYQKKKGKNKKGRGARHRMLRRGQKFLTEEEYQEL
FT LDKGLTREQLLDAIEEIVRARIGFPDWSDPEYSSEEDDAAVTYWWEQVKESDYKDGVPQ
FT FEHIVPKYSPNERVFSEQERKDVSEELSALQSIVDGVKKEDWEETKKQTTDALNHALYV
FT VDKALAQHGYILFEQRMRPKNGKRGPRRRTPNTT"
FT CDS <2315. .3850
FT /codon_start=1
FT /product="ORF1b"
FT /note="RNA-dependent RNA-polymerase; translated by
FT ribosomal frameshift"
FT /protein_id="ACI62174.1"
FT /translation="TTYAAKKRKKGSSEEDPKHYLDTWIGMLSPCVRWLVPERFPLYGG
FT VPLDRPVYDFKVVNEDLLGLLPPPPNNDFEVFGPTVWDEIAYKKSFEKFEYADYVDFEQ
FT IYPECVAFADKKFLEHFNFLSDSSFVNILATDKNVDSTPAYPKMRWWLTESDYLEECGW
FT EYYVKEFENIASGQNPDVCWYLFLKKEIIRQQKIDEGDVRQIVCADPIYSRIGACFEQH
FT QNAMMKDHTLSSSGQCGWSPFFGGYEARMSRLRSKGNKIFVELDWTRFDGTIPPTLLMH
FT IKKLRFTLMGSMSRKYENVYKWYCRNLINRFVVLPSGEVTAQQRGNPSGQMSTTMDNNM
FT INYWLQAFEYKFLNLPEEEWMHFDTLIYGDDRISTYRSIPNEYTKTIVDMYKNVFGMWV
FT KPEKVKVSESLEGLSFCGFTYTPNGPVPSEPYKLMASLLKPATKLPDLIALHGKLLCFQ
FT LLMANDTAHPFYGYIEQCLQYTHRALSDVSLPRRFTRRQLEYIWRGGPNDDYG"
FT CDS 3843. .6113
FT /codon_start=1
FT /product="capsid protein"
FT /note="ORF2"
FT /protein_id="ACI62175.1"
FT /translation="MANASKGVTVNINNAKRKPRFTNNQRARSTRPNFTPAPKFRKRRF
FT IPNRNRRRRQNTSTTGPKPAVSQTITATLGTVGSNLSDVVETECAVFLNPIIAKDSGAS
FT ATFGPLQSLGAQYALWRLKWLEVRLQPLVGNSAVSGTVARVSLNMTTGPTLNSWSGLGA
FT RIHKDVRVGSNLVWRIKQRLVSGPCETWWKTNTAEDPSLSLGPALEVHTIGKTMSTYKN
FT EVFSSGLFLLEITGHWEFANYAASPALATLTQHKDDSETTKTLAISSDGANEPVEMLIP
FT VNEWNMKAQYGGNGTLGEAIYQVVDTSVTVVTDLFPPPFSWIGKASWWFIRKMIGKTKQ
FT FQVVVNGQNQTLTADVYRVYTSASAARDDKPAISSKAHEAKHLTGAVVITQISTDNILS
FT ETTYTGPRSIVTPETPIGPSSYPMTPSSLVLMAGYFSGPEISDNFGKYMPLLFQQNTSK
FT VTFRSGSHTIKIVSMVLVDRLMWLDKHFNQYTNEPDGVFGDVGNVFVDNDNVAKVITMS
FT GSSAPANRGATLMLCRATKNIQTFNFAATVYIPAYKVKDGAGGKDVVLNVAQWEANKTL
FT TYPAIPKDTYFMVVTMGGASFTIQRYVVYNEGIGDGLELPAFWGKYLSQLYGFSWSSPT
FT YACVTWEPIYAEEGIPHRSALNDDEISSDGDTDDDTDTEDEDEFFGEDPIAALHALDEK
FT RPARRAMFDALVKTGVSVEEASRCVLRACPTKLQIKKRNLYESLLCDGLSPESSYEEAY
FT NCK"
FT 3'UTR 6114. .6171
XX
SQ Sequence 6171 BP; 1840 A; 1127 C; 1395 G; 1809 T; 0 other;
fj222451 Length: 6171 21-OCT-2008 Type: N Check: 8172 ..
1 ccaagagtgg tggtatggct gtgcctttcc atattggtgt gtcagacaaa
51 gttatgaatc tgggttcagc tcgctcacgt gagtggctta atgagctacc
101 cagcacagca ctcaaccagc tgcgtgacat cttcccattt gaagtcccaa
151 ttaatactat gatagtacct aagtccagat atcaattggg tactggtgtc
201 acacttgcag tccaaggtat ggttacattg ggttgctaca gcacatatgc
251 acttgatggt gaagcatgga ttgaagttga tgaaaccaga atagatccaa
301 agtgtgcata tgttgggacc atggccctag atagggtaaa gcttatggat
351 cgcaacaaag aactgcagct ggataatgca tcaatgagtg ttgatttgca
401 actgactcgc catgaattgg agaggtgtag gccaaccatc attcgaccgc
451 aaagatatgg taactttgca ctttttgttc tttttttctt ccttttcttt
501 attttaggaa caaaggctga agattggcat gatcagactc aggattattt
551 ggttgaattc ctgaaagaag caaaacagga aattgtgtct aatttggata
601 catattatag ccttctttta catgtagtca ggtgggaggt ggtttcatgc
651 attatagcga ttgtttcttt tttcaaatta aagagaccct gtgttgcaat
701 aattggttta tttttggcaa ctatatccag atacaattat gcagcattgt
751 ccattgtacc atttctggat gtctacagca ctgttttctt gtacaccacc
801 atggttgtgt attttttggt accccatgtg gctataatta catcattagt
851 ttgtgcacta ctatttacta ttgtaagtat ggtatgtgca catcaccaat
901 tcatcatacg tgtgcgtgga gattggcttg ttgtcttaat caccattgca
951 acatatatct gtgatgttat gggtatacat actacagcaa tagccattgc
1001 tgcatcgtta gtgcgtattt atatgtgctt tcctgcggct aacgcatcag
1051 tggtggaaat caaggatagt gctggtaaag tagttcagaa aacaacattg
1101 ctacccaact ggatcggctc aatgtatcaa ggtgcccgaa acatgttgca
1151 aaaagtcaga actggtgttg cgacatttgt tcgggttaac cctaattgct
1201 tgtgccatat tagaagtgaa ggttgtagtg gtacaggctt caggttaggt
1251 aatgacatag ttaccgccgc acatgttgta ggcaatgctg tacaggttga
1301 ggtggtatat aataattatg ttgctcaagc caaagttaga catatccctg
1351 ataaagatat tgcatatctt atattaccag agggtcttaa aactatgcct
1401 gttttaaaat tggcaaaaaa cccaaattat gaacaggtca caataatagc
1451 attagagggc aattgcatgc ttgtttccac tacagagggt gtatgtcatg
1501 gtgaaactat ttcatatgcc tgtgctacca gagatggtat gagtggtgct
1551 cctgttcttg atgtcaatgg aaatgttctt ggtgttcatc aaacaaatac
1601 tggatataca ggtggtgcga cagtgattag agccactgat gctgcaccat
1651 atattgatga gaatgctgca cttaagaaag aaatagagga attaaagaag
1701 atgctgcgcg aacaaacaat gaatcagaga tctgtccaag ataatgaggt
1751 tgtaggaata gttcgtgcag ctgtccaaag agagattgga atattacgtg
1801 atgaacttaa ttcatgttat caaaaaaaga aaggaaaaaa taagaaagga
1851 cgcggtgcac gacatcgtat gctgcgtcgt ggacaaaaat ttctgacaga
1901 agaggagtac caagaactgt tggataaggg actgactagg gaacaactac
1951 ttgatgcaat tgaggaaatt gtcagggcac gtatcggatt ccctgactgg
2001 tcagaccctg aatattcatc tgaagaggat gatgcagcag ttacatattg
2051 gtgggaacaa gtaaaagaga gtgattataa agatggagtg ccccagtttg
2101 aacatattgt acccaagtat tctccaaatg aaagagtatt ttctgaacaa
2151 gagcgtaagg atgttagtga agaactgtct gctttgcaat ctatagtaga
2201 tggagtgaag aaggaagatt gggaagaaac caaaaagcag actactgacg
2251 ctcttaatca tgcactatac gttgttgata aggctcttgc acaacatggt
2301 tatatactct ttgaacaacg tatgcggcca aaaaacggaa aaaggggtcc
2351 tcggaggagg accccaaaca ctacctagat acatggattg ggatgcttag
2401 tccttgcgtt cgttggctgg ttccggaacg ctttcctttg tatggtggtg
2451 tacctttaga taggccagtg tatgatttta aagttgttaa tgaagatttg
2501 ttggggttac tcccaccccc acctaataat gattttgagg tttttggtcc
2551 cactgtatgg gatgaaattg catataagaa atcatttgaa aagtttgaat
2601 atgctgatta tgttgatttt gaacagatat atcctgagtg tgttgctttt
2651 gctgataaaa aatttttgga acatttcaat tttttgtctg attcttcttt
2701 tgtaaatatt ttagcaactg ataaaaatgt tgattccaca cccgcttatc
2751 caaagatgcg gtggtggctt actgagagtg attatcttga ggagtgtgga
2801 tgggaatatt atgttaagga gtttgaaaac atcgcttctg gtcaaaatcc
2851 agatgtttgt tggtacctat tcctcaagaa agaaattatc aggcaacaaa
2901 aaattgatga aggggatgtc agacaaatag tgtgtgctga cccaatatat
2951 tccagaattg gggcatgttt tgagcaacac caaaatgcca tgatgaagga
3001 ccacactctt tcatcatctg gacagtgtgg ttggtcccct ttctttggtg
3051 gttatgaagc aaggatgtcc aggttgcgct ccaaaggtaa taaaatcttt
3101 gttgagcttg attggactcg atttgatggt acaataccac caaccttgtt
3151 gatgcacata aagaaattaa ggtttacctt aatgggttcc atgtcccgca
3201 agtatgaaaa tgtatacaag tggtattgta ggaacctaat caataggttt
3251 gttgtgctac cttcaggtga agttacagca cagcagcgtg gaaatccatc
3301 aggtcagatg tcaaccacca tggataataa catgatcaac tattggttgc
3351 aggcatttga atacaaattt ttgaatttac cagaagaaga gtggatgcat
3401 tttgatactt taatctatgg agatgatagg atatccacat atcgcagcat
3451 ccctaatgaa tataccaaga caatagttga catgtacaaa aatgtttttg
3501 gaatgtgggt taagccagaa aaggttaaag tctcagagtc cttggagggg
3551 ctctcattct gtggtttcac ttacacacca aatggcccag ttccaagtga
3601 gccttataaa cttatggcct cattgttgaa acctgctaca aaactacctg
3651 atttaatagc tcttcatggg aaacttttgt gcttccagtt gttgatggca
3701 aatgacactg cacacccatt ttatgggtat attgaacaat gtttgcagta
3751 cacacaccgt gccctcagtg atgttagctt accaaggcgc ttcactcgaa
3801 ggcagctgga gtacatttgg aggggcggac caaatgatga ctatggctaa
3851 tgccagtaaa ggtgttacag tcaacatcaa caatgcaaaa cggaagcctc
3901 gcttcaccaa taaccagcga gctagatcta ctaggccaaa ttttacacca
3951 gcacccaaat ttaggaaacg tcggtttatt cctaatagga atcgccgtcg
4001 taggcaaaat actagtacaa ctgggcctaa acctgcggtg tcgcagacaa
4051 ttacagcaac actcggcacc gttggatcaa atttgagtga tgttgttgaa
4101 actgaatgtg cagtcttttt gaatcccatt atagcaaaag attctggtgc
4151 cagtgcaact tttgggcccc ttcaatctct gggtgcacag tatgcactat
4201 ggaggctcaa gtggctggaa gtcagactcc agcctttggt gggtaactca
4251 gctgtgagtg gcactgtagc tcgtgttagt cttaacatga ctactggtcc
4301 cactctcaac tcatggtctg gtcttggagc ccgaattcac aaggatgtta
4351 gagttggttc aaatcttgtt tggcgcatta aacagcgtct agtgagtgga
4401 ccttgtgaaa cttggtggaa aactaataca gctgaggacc catcattatc
4451 tcttggacct gcactggaag tacataccat aggtaagact atgagtactt
4501 acaaaaatga agtgttttcc agtggactat ttcttcttga gataactggc
4551 cactgggaat ttgcaaatta tgctgcttct ccagcccttg ctacactcac
4601 acaacataag gatgacagtg agactacaaa aacacttgca atcagttctg
4651 atggtgccaa tgaaccagtt gagatgctaa tacctgtgaa tgaatggaat
4701 atgaaggcac agtatggtgg aaatggcacg cttggtgaag caatttacca
4751 agttgttgat actagtgtca cagttgtgac agacctcttt ccaccaccat
4801 tttcatggat tggtaaagct tcatggtggt ttatcagaaa aatgattggc
4851 aaaacaaaac aattccaggt tgttgttaat ggtcaaaacc aaacacttac
4901 agcggatgtc tatcgtgttt acacttcagc ttctgctgct agagatgata
4951 aaccagcaat ttccagcaag gcacatgaag caaagcatct aactggtgca
5001 gtggttatca cacaaatttc tacagacaac attctttcag aaaccacata
5051 tactggccca aggtctattg tcacaccaga gactcctatt ggtccgtcta
5101 gctatccaat gacaccaagt tctttggtac ttatggctgg atattttagt
5151 ggaccagaaa ttagtgataa ttttggcaag tacatgccct tgcttttcca
5201 acagaatacc tctaaggtta catttaggag tggtagtcat accataaaaa
5251 ttgtaagcat ggttcttgtg gaccggctta tgtggttgga taagcatttt
5301 aatcagtaca ctaatgaacc agatggagtc tttggagacg ttggcaacgt
5351 tttcgttgac aatgataatg tagccaaggt tattactatg agtgggtcat
5401 cagcaccagc taatagaggt gccactttaa tgttatgcag agccacaaaa
5451 aacatccaga cttttaattt tgcagcaaca gtatatatac cagcctataa
5501 agttaaagat ggtgcaggtg gcaaagatgt tgttctgaat gtggcccagt
5551 gggaagcaaa taaaactttg acatacccag ctatacctaa ggacacgtat
5601 tttatggttg taacaatggg aggtgctagt tttaccattc aaaggtatgt
5651 ggtatacaat gagggcattg gtgacggcct agaattacca gcattctggg
5701 gcaaatattt atcccagcta tatggcttta gctggagttc accaacctat
5751 gcatgtgtaa cttgggagcc catctatgct gaagaaggta taccacatag
5801 aagtgcatta aatgatgatg aaataagcag tgatggtgac actgatgatg
5851 acactgacac agaagacgaa gatgagttct tcggtgagga tcccattgct
5901 gcattgcacg cccttgatga aaagagacca gctaggcgtg caatgtttga
5951 tgcacttgtt aaaactggtg tcagtgttga agaagcatct aggtgtgtcc
6001 ttagagcatg tcctacaaaa cttcagatta agaaaaggaa cctttatgaa
6051 agcctcctgt gcgatggctt atcacctgag tcgtcgtacg aggaagcata
6101 caattgtaaa taattaatta atttcaattg taattataat ttgctttttt
6151 tcttccagca taaatgtatg c