Sequence of DPV Pepino mosaic virus
Pepino mosaic virus isolate PMU05/10 triple gene block protein 1 (TGBp1), triple gene block protein 2 (TGBp2), triple gene block protein 3 (TGBp3), and capsid protein (CP) genes, complete cds.
ACC No: FJ263335
Dated: 2009-11-18 | Length: 1916 | CRC: -202869859
ID FJ263335; SV 1; linear; genomic RNA; STD; VRL; 1916 BP. XX AC FJ263335; XX DT 02-OCT-2009 (Rel. 102, Created) DT 18-NOV-2009 (Rel. 102, Last updated, Version 2) XX DE Pepino mosaic virus isolate PMU05/10 triple gene block protein 1 (TGBp1), DE triple gene block protein 2 (TGBp2), triple gene block protein 3 (TGBp3), DE and capsid protein (CP) genes, complete cds. XX KW . XX OS Pepino mosaic virus OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales; OC Alphaflexiviridae; Potexvirus. XX RN [1] RP 1-1916 RX PUBMED; 19759144. RA Gomez P., Sempere R.N., Elena S.F., Aranda M.A.; RT "Mixed infections of Pepino mosaic virus strains modulate the evolutionary RT dynamics of this emergent virus"; RL J. Virol. 83(23):12378-12387(2009). XX RN [2] RP 1-1916 RA Gomez P., Sempere R.N., Elena S.F., Aranda M.A.; RT ; RL Submitted (29-SEP-2008) to the EMBL/GenBank/DDBJ databases. RL Dpto Biologia del Estres y Patologia Vegetal, Centro de Edafologia y RL Biologia Aplicada del Segura (CEBAS)-CSIC, Campus de Espinardo, Espinardo, RL Murcia Apdo. Correos 164 30100, Spain XX FH Key Location/Qualifiers FH FT source 1. .1916 FT /organism="Pepino mosaic virus" FT /host="Solanum lycopersicum" FT /isolate="PMU05/10" FT /mol_type="genomic RNA" FT /country="Spain" FT /collection_date="Dec-2005" FT /note="CH2 type acronym: PepMV" FT /db_xref="taxon:112229" FT gene 1. .705 FT /gene="TGBp1" FT CDS 1. .705 FT /codon_start=1 FT /gene="TGBp1" FT /product="triple gene block protein 1" FT /db_xref="UniProtKB/TrEMBL:C9WBV2" FT /protein_id="ACO59338.1" FT /translation="MERSTLINLLLLHKFEHKINTEGTIVVHGIAGTGKTTLLRTLFSA FT YPSLVIGSPRPCYLDKVNKISQVCLSCFPNTLCDIVDEYHLLESFPEPKLAIFGDPCQC FT TYIERLRTPNYTSFRTHRFGKSTAALLNKLFDLNIESVKAQDDTVEYFDPFAVDPSEHI FT SASEKEVLEFVGDQVETTSSEELAGLEFSEVTFYCTTLAGAVQENPAKTFISLTRHTSK FT LTIGELNARSDS" FT gene 686. .1057 FT /gene="TGBp2" FT CDS 686. .1057 FT /codon_start=1 FT /gene="TGBp2" FT /product="triple gene block protein 2" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:Q699Z7" FT /protein_id="ACO59339.1" FT /translation="MPGLTPRADLTDTYKIIAIAFLLSACIYFQNSHYQPVAGDNLHRL FT PFGGQYQDGTKKISYFPQQQSYFHSGNKLNVLILIFILTLGIVLTNKFSFSISRNTHQH FT HCYNTHSATQTGQSVPGHH" FT gene 909. .1157 FT /gene="TGBp3" FT CDS 909. .1157 FT /codon_start=1 FT /gene="TGBp3" FT /product="triple gene block protein 3" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:Q334E8" FT /protein_id="ACO59340.1" FT /translation="MSSYLSSFLHWVLSSPINLVLALAVILTSIIATTHILQPKQVNQC FT QVIIDGAAIVITNCPNTPEVLKAINFSPWNGLSFPQL" FT gene 1203. .1916 FT /gene="CP" FT CDS 1203. .1916 FT /codon_start=1 FT /gene="CP" FT /product="capsid protein" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:Q2UVL7" FT /protein_id="ACO59341.1" FT /translation="MENQPTASNPSDVPPTAAQAGAQSPADFSNPNTAPSLSDLKKIKY FT VSTVTSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN FT PALSRRALAAQFDRINITPRQFCMYFAKIVWNILLDSNVPPANWAKLGYQEDTKFAAFD FT FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM FT GGANTMYAIDAPPEL" XX SQ Sequence 1916 BP; 563 A; 474 C; 338 G; 541 T; 0 other; fj263335 Length: 1916 18-NOV-2009 Type: N Check: 7261 .. 1 atggaaagat caactttgat caatttactt ctgttacaca aatttgaaca 51 caagattaac actgaaggaa ccattgttgt gcacggaatt gctggaactg 101 ggaaaaccac attgcttagg actttatttt ctgcataccc tagcttagtt 151 ataggttcac ctaggccttg ttacttagat aaagttaaca aaatttcaca 201 agtttgcctt tcttgttttc caaatacctt gtgtgacatt gttgacgagt 251 accatctctt agaaagtttt cctgaaccaa aactagccat tttcggtgac 301 ccctgtcagt gcacttacat tgaaaggttg agaacaccca actacacatc 351 cttcagaaca caccgatttg gcaaatccac tgctgctcta ctaaacaagt 401 tatttgatct taacattgag tcagtcaaag cacaagacga cacagtagaa 451 tactttgatc ctttcgcagt ggacccctct gaacacattt ctgcttcaga 501 aaaagaagtt ttggaatttg taggcgatca agttgagact acaagctctg 551 aagaactagc tggtctcgag tttagtgaag ttactttcta ctgtaccaca 601 cttgctggtg ctgttcaaga aaatcctgcc aaaaccttca tttcactcac 651 tagacacact tcaaagctca caattggtga actaaatgcc aggtctgact 701 cctagagctg atcttactga cacgtataaa atcattgcta tagcctttct 751 actgtcagct tgcatttact tccaaaacag tcattatcaa ccagttgcag 801 gtgataactt gcacagacta ccctttggtg gtcagtatca agacggaact 851 aagaagattt cttactttcc gcagcaacaa tcctactttc actcaggaaa 901 caagcttaat gtcctcatac ttatcttcat tcttacactg ggtattgtcc 951 tcaccaataa atttagtttt agcattagcc gtaatactca ccagcatcat 1001 tgctacaaca cacattctgc aacccaaaca ggtcaatcag tgccaggtca 1051 tcattgacgg tgcagccata gttataacaa attgtccaaa cacacccgaa 1101 gttcttaaag caatcaactt ctccccttgg aacgggttaa gttttcctca 1151 attgtgaaat catatttgtt atctagttaa attcaaacaa tttaactcaa 1201 ctatggaaaa ccaacctaca gcttctaacc catcagatgt accaccaact 1251 gctgctcaag ctggtgccca gagcccagcc gacttctcaa atcctaacac 1301 agctccttcc ctaagtgatt tgaagaagat caaatacgtg tcaaccgtca 1351 cttcagttgc cacgcctgct gaaattgagg cccttggcaa gatctttact 1401 gccatgggtt tagcagccaa tgagaccgga cctgccatgt gggacctcgc 1451 tcgtgcttat gctgatgtgc aaagttcaaa atctgcacaa cttataggtg 1501 ccacaccatc caaccctgct ttgtctagac gtgcacttgc tgcacagttt 1551 gatcgtatca atatcacacc cagacaattc tgcatgtatt ttgcaaaaat 1601 tgtttggaac atactgttag acagcaatgt gccacctgcc aactgggcaa 1651 aattgggcta tcaagaagat accaagtttg ctgcttttga cttctttgat 1701 ggagtcacaa atccagctag tctacagcct gcagatggcc taatcaggca 1751 gcccaatgaa aaagagcttg ctgctcactc ggttgctaaa tatggtgccc 1801 ttgcccgcca gaaaatatcc actggtaact acatcaccac ccttggtgaa 1851 gttacacgtg gtcacatggg cggcgccaac actatgtacg caattgatgc 1901 acctcctgaa ctttaa