Sequence of DPV Pepino mosaic virus

Pepino mosaic virus isolate PMU05/10 triple gene block protein 1 (TGBp1), triple gene block protein 2 (TGBp2), triple gene block protein 3 (TGBp3), and capsid protein (CP) genes, complete cds.

ACC No: FJ263335

Dated: 2009-11-18 | Length: 1916 | CRC: -202869859

                
ID   FJ263335; SV 1; linear; genomic RNA; STD; VRL; 1916 BP.
XX
AC   FJ263335;
XX
DT   02-OCT-2009 (Rel. 102, Created)
DT   18-NOV-2009 (Rel. 102, Last updated, Version 2)
XX
DE   Pepino mosaic virus isolate PMU05/10 triple gene block protein 1 (TGBp1),
DE   triple gene block protein 2 (TGBp2), triple gene block protein 3 (TGBp3),
DE   and capsid protein (CP) genes, complete cds.
XX
KW   .
XX
OS   Pepino mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales;
OC   Alphaflexiviridae; Potexvirus.
XX
RN   [1]
RP   1-1916
RX   PUBMED; 19759144.
RA   Gomez P., Sempere R.N., Elena S.F., Aranda M.A.;
RT   "Mixed infections of Pepino mosaic virus strains modulate the evolutionary
RT   dynamics of this emergent virus";
RL   J. Virol. 83(23):12378-12387(2009).
XX
RN   [2]
RP   1-1916
RA   Gomez P., Sempere R.N., Elena S.F., Aranda M.A.;
RT   ;
RL   Submitted (29-SEP-2008) to the EMBL/GenBank/DDBJ databases.
RL   Dpto Biologia del Estres y Patologia Vegetal, Centro de Edafologia y
RL   Biologia Aplicada del Segura (CEBAS)-CSIC, Campus de Espinardo, Espinardo,
RL   Murcia Apdo. Correos 164 30100, Spain
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1916
FT                   /organism="Pepino mosaic virus"
FT                   /host="Solanum lycopersicum"
FT                   /isolate="PMU05/10"
FT                   /mol_type="genomic RNA"
FT                   /country="Spain"
FT                   /collection_date="Dec-2005"
FT                   /note="CH2 type acronym: PepMV"
FT                   /db_xref="taxon:112229"
FT   gene            1. .705
FT                   /gene="TGBp1"
FT   CDS             1. .705
FT                   /codon_start=1
FT                   /gene="TGBp1"
FT                   /product="triple gene block protein 1"
FT                   /db_xref="UniProtKB/TrEMBL:C9WBV2"
FT                   /protein_id="ACO59338.1"
FT                   /translation="MERSTLINLLLLHKFEHKINTEGTIVVHGIAGTGKTTLLRTLFSA
FT                   YPSLVIGSPRPCYLDKVNKISQVCLSCFPNTLCDIVDEYHLLESFPEPKLAIFGDPCQC
FT                   TYIERLRTPNYTSFRTHRFGKSTAALLNKLFDLNIESVKAQDDTVEYFDPFAVDPSEHI
FT                   SASEKEVLEFVGDQVETTSSEELAGLEFSEVTFYCTTLAGAVQENPAKTFISLTRHTSK
FT                   LTIGELNARSDS"
FT   gene            686. .1057
FT                   /gene="TGBp2"
FT   CDS             686. .1057
FT                   /codon_start=1
FT                   /gene="TGBp2"
FT                   /product="triple gene block protein 2"
FT                   /db_xref="InterPro:IPR001896"
FT                   /db_xref="UniProtKB/TrEMBL:Q699Z7"
FT                   /protein_id="ACO59339.1"
FT                   /translation="MPGLTPRADLTDTYKIIAIAFLLSACIYFQNSHYQPVAGDNLHRL
FT                   PFGGQYQDGTKKISYFPQQQSYFHSGNKLNVLILIFILTLGIVLTNKFSFSISRNTHQH
FT                   HCYNTHSATQTGQSVPGHH"
FT   gene            909. .1157
FT                   /gene="TGBp3"
FT   CDS             909. .1157
FT                   /codon_start=1
FT                   /gene="TGBp3"
FT                   /product="triple gene block protein 3"
FT                   /db_xref="InterPro:IPR003411"
FT                   /db_xref="UniProtKB/TrEMBL:Q334E8"
FT                   /protein_id="ACO59340.1"
FT                   /translation="MSSYLSSFLHWVLSSPINLVLALAVILTSIIATTHILQPKQVNQC
FT                   QVIIDGAAIVITNCPNTPEVLKAINFSPWNGLSFPQL"
FT   gene            1203. .1916
FT                   /gene="CP"
FT   CDS             1203. .1916
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="capsid protein"
FT                   /db_xref="InterPro:IPR000052"
FT                   /db_xref="UniProtKB/TrEMBL:Q2UVL7"
FT                   /protein_id="ACO59341.1"
FT                   /translation="MENQPTASNPSDVPPTAAQAGAQSPADFSNPNTAPSLSDLKKIKY
FT                   VSTVTSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN
FT                   PALSRRALAAQFDRINITPRQFCMYFAKIVWNILLDSNVPPANWAKLGYQEDTKFAAFD
FT                   FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM
FT                   GGANTMYAIDAPPEL"
XX
SQ   Sequence 1916 BP; 563 A; 474 C; 338 G; 541 T; 0 other;

fj263335 Length: 1916  18-NOV-2009  Type: N  Check: 7261  ..

       1  atggaaagat caactttgat caatttactt ctgttacaca aatttgaaca
      51  caagattaac actgaaggaa ccattgttgt gcacggaatt gctggaactg
     101  ggaaaaccac attgcttagg actttatttt ctgcataccc tagcttagtt
     151  ataggttcac ctaggccttg ttacttagat aaagttaaca aaatttcaca
     201  agtttgcctt tcttgttttc caaatacctt gtgtgacatt gttgacgagt
     251  accatctctt agaaagtttt cctgaaccaa aactagccat tttcggtgac
     301  ccctgtcagt gcacttacat tgaaaggttg agaacaccca actacacatc
     351  cttcagaaca caccgatttg gcaaatccac tgctgctcta ctaaacaagt
     401  tatttgatct taacattgag tcagtcaaag cacaagacga cacagtagaa
     451  tactttgatc ctttcgcagt ggacccctct gaacacattt ctgcttcaga
     501  aaaagaagtt ttggaatttg taggcgatca agttgagact acaagctctg
     551  aagaactagc tggtctcgag tttagtgaag ttactttcta ctgtaccaca
     601  cttgctggtg ctgttcaaga aaatcctgcc aaaaccttca tttcactcac
     651  tagacacact tcaaagctca caattggtga actaaatgcc aggtctgact
     701  cctagagctg atcttactga cacgtataaa atcattgcta tagcctttct
     751  actgtcagct tgcatttact tccaaaacag tcattatcaa ccagttgcag
     801  gtgataactt gcacagacta ccctttggtg gtcagtatca agacggaact
     851  aagaagattt cttactttcc gcagcaacaa tcctactttc actcaggaaa
     901  caagcttaat gtcctcatac ttatcttcat tcttacactg ggtattgtcc
     951  tcaccaataa atttagtttt agcattagcc gtaatactca ccagcatcat
    1001  tgctacaaca cacattctgc aacccaaaca ggtcaatcag tgccaggtca
    1051  tcattgacgg tgcagccata gttataacaa attgtccaaa cacacccgaa
    1101  gttcttaaag caatcaactt ctccccttgg aacgggttaa gttttcctca
    1151  attgtgaaat catatttgtt atctagttaa attcaaacaa tttaactcaa
    1201  ctatggaaaa ccaacctaca gcttctaacc catcagatgt accaccaact
    1251  gctgctcaag ctggtgccca gagcccagcc gacttctcaa atcctaacac
    1301  agctccttcc ctaagtgatt tgaagaagat caaatacgtg tcaaccgtca
    1351  cttcagttgc cacgcctgct gaaattgagg cccttggcaa gatctttact
    1401  gccatgggtt tagcagccaa tgagaccgga cctgccatgt gggacctcgc
    1451  tcgtgcttat gctgatgtgc aaagttcaaa atctgcacaa cttataggtg
    1501  ccacaccatc caaccctgct ttgtctagac gtgcacttgc tgcacagttt
    1551  gatcgtatca atatcacacc cagacaattc tgcatgtatt ttgcaaaaat
    1601  tgtttggaac atactgttag acagcaatgt gccacctgcc aactgggcaa
    1651  aattgggcta tcaagaagat accaagtttg ctgcttttga cttctttgat
    1701  ggagtcacaa atccagctag tctacagcct gcagatggcc taatcaggca
    1751  gcccaatgaa aaagagcttg ctgctcactc ggttgctaaa tatggtgccc
    1801  ttgcccgcca gaaaatatcc actggtaact acatcaccac ccttggtgaa
    1851  gttacacgtg gtcacatggg cggcgccaac actatgtacg caattgatgc
    1901  acctcctgaa ctttaa