Sequence of DPV Pepino mosaic virus

Pepino mosaic virus isolate PMU07/29 triple gene block protein 1 (TGBp1), triple gene block protein 2 (TGBp2), and triple gene block protein 3 (TGBp3) genes, complete cds; and nonfunctional capsid protein (CP) gene, complete sequence.

ACC No: FJ263351

Dated: 2009-11-18 | Length: 1914 | CRC: 1308753516

                
ID   FJ263351; SV 1; linear; genomic RNA; STD; VRL; 1914 BP.
XX
AC   FJ263351;
XX
DT   02-OCT-2009 (Rel. 102, Created)
DT   18-NOV-2009 (Rel. 102, Last updated, Version 2)
XX
DE   Pepino mosaic virus isolate PMU07/29 triple gene block protein 1 (TGBp1),
DE   triple gene block protein 2 (TGBp2), and triple gene block protein 3
DE   (TGBp3) genes, complete cds; and nonfunctional capsid protein (CP) gene,
DE   complete sequence.
XX
KW   .
XX
OS   Pepino mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales;
OC   Alphaflexiviridae; Potexvirus.
XX
RN   [1]
RP   1-1914
RX   PUBMED; 19759144.
RA   Gomez P., Sempere R.N., Elena S.F., Aranda M.A.;
RT   "Mixed infections of Pepino mosaic virus strains modulate the evolutionary
RT   dynamics of this emergent virus";
RL   J. Virol. 83(23):12378-12387(2009).
XX
RN   [2]
RP   1-1914
RA   Gomez P., Sempere R.N., Elena S.F., Aranda M.A.;
RT   ;
RL   Submitted (29-SEP-2008) to the EMBL/GenBank/DDBJ databases.
RL   Dpto Biologia del Estres y Patologia Vegetal, Centro de Edafologia y
RL   Biologia Aplicada del Segura (CEBAS)-CSIC, Campus de Espinardo, Espinardo,
RL   Murcia Apdo. Correos 164 30100, Spain
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1914
FT                   /organism="Pepino mosaic virus"
FT                   /host="Solanum lycopersicum"
FT                   /isolate="PMU07/29"
FT                   /mol_type="genomic RNA"
FT                   /country="Spain"
FT                   /collection_date="Mar-2007"
FT                   /note="CH2 type acronym: PepMV"
FT                   /db_xref="taxon:112229"
FT   gene            1. .705
FT                   /gene="TGBp1"
FT   CDS             1. .705
FT                   /codon_start=1
FT                   /gene="TGBp1"
FT                   /product="triple gene block protein 1"
FT                   /db_xref="UniProtKB/TrEMBL:C9WC41"
FT                   /protein_id="ACO59399.1"
FT                   /translation="MERSTLINLLLLHKFEHKINTEGIIVVHGIAGTGKTTLLRTLFSA
FT                   YPSLVIGSPRPCYLDKANKISQVCLSCFPNTLCDIVDEYHLLESFPEPKLAIFGDPCQC
FT                   TYIERLRTPNYTSFRTHRFGKSTAALLNKLFDLNIESVKAQDDTVEYFDPFAVDPSEHI
FT                   SASEKEVLEFVGDQVETTSSEELTGLEFSEVTFYCTTLAGAVQENPAKTFISLTRHTSK
FT                   LTIGELNARSDS"
FT   gene            686. .1057
FT                   /gene="TGBp2"
FT   CDS             686. .1057
FT                   /codon_start=1
FT                   /gene="TGBp2"
FT                   /product="triple gene block protein 2"
FT                   /db_xref="InterPro:IPR001896"
FT                   /db_xref="UniProtKB/TrEMBL:Q699Z7"
FT                   /protein_id="ACO59400.1"
FT                   /translation="MPGLTPRADLTDTYKIIAIAFLLSACIYFQNSHYQPVAGDNLHRL
FT                   PFGGQYQDGTKKISYFPQQQSYFHSGNKLNVLILIFILTLGIVLTNKFSFSISRNTHQH
FT                   HCYNTHSATQTGQSVPGHH"
FT   gene            909. .1157
FT                   /gene="TGBp3"
FT   CDS             909. .1157
FT                   /codon_start=1
FT                   /gene="TGBp3"
FT                   /product="triple gene block protein 3"
FT                   /db_xref="InterPro:IPR003411"
FT                   /db_xref="UniProtKB/TrEMBL:Q334E8"
FT                   /protein_id="ACO59401.1"
FT                   /translation="MSSYLSSFLHWVLSSPINLVLALAVILTSIIATTHILQPKQVNQC
FT                   QVIIDGAAIVITNCPNTPEVLKAINFSPWNGLSFPQL"
FT   gene            1203. .1914
FT                   /gene="CP"
FT   misc_feature    1203. .1914
FT                   /gene="CP"
FT                   /note="nonfunctional capsid protein due to mutation"
XX
SQ   Sequence 1914 BP; 563 A; 468 C; 337 G; 546 T; 0 other;

fj263351 Length: 1914  18-NOV-2009  Type: N  Check: 6951  ..

       1  atggaaagat caactttgat caatttactt ctgttacaca aatttgaaca
      51  caagattaac actgaaggaa tcattgttgt gcacggaatt gctggaactg
     101  ggaaaaccac attgcttagg actttatttt ctgcataccc tagcttagtt
     151  ataggttcac ctaggccttg ttacttagat aaagctaata aaatttcaca
     201  agtttgcctt tcttgttttc caaatacttt gtgtgacatt gttgacgagt
     251  accatctctt agaaagtttt cctgaaccaa aactagccat ttttggtgac
     301  ccctgtcagt gcacttacat tgaaaggttg agaacaccca actacacatc
     351  cttcagaaca caccgatttg gcaaatccac tgctgctcta ctaaacaagt
     401  tattcgatct taacattgag tcagtcaaag cacaagacga cacagtagaa
     451  tactttgatc ctttcgcagt ggacccctct gaacacattt ctgcttcaga
     501  aaaagaagtt ttggaatttg taggtgatca agttgagact acaagctctg
     551  aagaactaac tggtctcgag tttagtgaag ttactttcta ctgtaccaca
     601  cttgctggtg ctgttcaaga aaatcctgcc aaaaccttca tttcactcac
     651  tagacacact tcaaagctca caattggtga actaaatgcc aggtctgact
     701  cctagagctg atcttactga cacgtataaa atcattgcta tagcctttct
     751  actgtcagct tgcatttact tccaaaacag tcattatcaa ccagttgcag
     801  gtgataattt gcacagacta ccctttggtg gtcagtatca agacggaact
     851  aagaagattt cttactttcc gcagcaacaa tcctactttc actcaggaaa
     901  caagcttaat gtcctcatac ttatcttcat tcttacactg ggtattgtcc
     951  tcaccaataa atttagtttt agcattagcc gtaatactca ccagcatcat
    1001  tgctacaaca cacattctgc aacccaaaca ggtcaatcag tgccaggtca
    1051  tcattgacgg tgcagccata gttataacaa attgtccaaa cacacccgaa
    1101  gttcttaaag caatcaactt ctccccttgg aacgggttaa gttttcccca
    1151  attgtgaaat catatttgtt atctagttaa atttaaacaa tttaactcaa
    1201  ctatggaaaa ccaacctaca gcttctaacc catcagatgt accaccaact
    1251  gctgctcaag ctggtgccca gagcccagcc gacttctcaa atcctaatac
    1301  agctccttcc ctaagtgatt tgaagaagat caaatacgtg tcaactgtca
    1351  cttcagttgc cacgcctgct gaaattgagg cccttggcaa gatctttact
    1401  gccatgggtt tagcagccaa tgagaccgga cctgccatgt gggacctcgc
    1451  tcgtgcttat gctgatgtgc aaagttcaaa atctgcacaa cttataggtg
    1501  ccacaccatc caaccctgct ttgtctagac gtgcacttgc tgcacagttt
    1551  gatcgtatca atatcacacc cagacaattc tgcatgtatt ttgcaaaaat
    1601  tgtttggaac atactgttag acagcaatgt gccacctgcc aactgggcaa
    1651  aattgggcta tcaggaagat accaagtttg ctgcttttga cttctttgat
    1701  ggagtcacaa atccagctag tctacagcct gcagatggcc taatcaggca
    1751  gcccaatgaa aaagagctct gctcactcgg ttgctaaata tggtgccctt
    1801  gcccgccaga aaatatccac tggtaactac atcaccaccc ttggtgaagt
    1851  tacacgtggt cacatgggcg gcgccaaccc tatgtacgca attgatgcac
    1901  ctcatgaact ttaa