Sequence of DPV Pepino mosaic virus
Pepino mosaic virus isolate PMU07/29 triple gene block protein 1 (TGBp1), triple gene block protein 2 (TGBp2), and triple gene block protein 3 (TGBp3) genes, complete cds; and nonfunctional capsid protein (CP) gene, complete sequence.
ACC No: FJ263351
Dated: 2009-11-18 | Length: 1914 | CRC: 1308753516
ID FJ263351; SV 1; linear; genomic RNA; STD; VRL; 1914 BP. XX AC FJ263351; XX DT 02-OCT-2009 (Rel. 102, Created) DT 18-NOV-2009 (Rel. 102, Last updated, Version 2) XX DE Pepino mosaic virus isolate PMU07/29 triple gene block protein 1 (TGBp1), DE triple gene block protein 2 (TGBp2), and triple gene block protein 3 DE (TGBp3) genes, complete cds; and nonfunctional capsid protein (CP) gene, DE complete sequence. XX KW . XX OS Pepino mosaic virus OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales; OC Alphaflexiviridae; Potexvirus. XX RN [1] RP 1-1914 RX PUBMED; 19759144. RA Gomez P., Sempere R.N., Elena S.F., Aranda M.A.; RT "Mixed infections of Pepino mosaic virus strains modulate the evolutionary RT dynamics of this emergent virus"; RL J. Virol. 83(23):12378-12387(2009). XX RN [2] RP 1-1914 RA Gomez P., Sempere R.N., Elena S.F., Aranda M.A.; RT ; RL Submitted (29-SEP-2008) to the EMBL/GenBank/DDBJ databases. RL Dpto Biologia del Estres y Patologia Vegetal, Centro de Edafologia y RL Biologia Aplicada del Segura (CEBAS)-CSIC, Campus de Espinardo, Espinardo, RL Murcia Apdo. Correos 164 30100, Spain XX FH Key Location/Qualifiers FH FT source 1. .1914 FT /organism="Pepino mosaic virus" FT /host="Solanum lycopersicum" FT /isolate="PMU07/29" FT /mol_type="genomic RNA" FT /country="Spain" FT /collection_date="Mar-2007" FT /note="CH2 type acronym: PepMV" FT /db_xref="taxon:112229" FT gene 1. .705 FT /gene="TGBp1" FT CDS 1. .705 FT /codon_start=1 FT /gene="TGBp1" FT /product="triple gene block protein 1" FT /db_xref="UniProtKB/TrEMBL:C9WC41" FT /protein_id="ACO59399.1" FT /translation="MERSTLINLLLLHKFEHKINTEGIIVVHGIAGTGKTTLLRTLFSA FT YPSLVIGSPRPCYLDKANKISQVCLSCFPNTLCDIVDEYHLLESFPEPKLAIFGDPCQC FT TYIERLRTPNYTSFRTHRFGKSTAALLNKLFDLNIESVKAQDDTVEYFDPFAVDPSEHI FT SASEKEVLEFVGDQVETTSSEELTGLEFSEVTFYCTTLAGAVQENPAKTFISLTRHTSK FT LTIGELNARSDS" FT gene 686. .1057 FT /gene="TGBp2" FT CDS 686. .1057 FT /codon_start=1 FT /gene="TGBp2" FT /product="triple gene block protein 2" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:Q699Z7" FT /protein_id="ACO59400.1" FT /translation="MPGLTPRADLTDTYKIIAIAFLLSACIYFQNSHYQPVAGDNLHRL FT PFGGQYQDGTKKISYFPQQQSYFHSGNKLNVLILIFILTLGIVLTNKFSFSISRNTHQH FT HCYNTHSATQTGQSVPGHH" FT gene 909. .1157 FT /gene="TGBp3" FT CDS 909. .1157 FT /codon_start=1 FT /gene="TGBp3" FT /product="triple gene block protein 3" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:Q334E8" FT /protein_id="ACO59401.1" FT /translation="MSSYLSSFLHWVLSSPINLVLALAVILTSIIATTHILQPKQVNQC FT QVIIDGAAIVITNCPNTPEVLKAINFSPWNGLSFPQL" FT gene 1203. .1914 FT /gene="CP" FT misc_feature 1203. .1914 FT /gene="CP" FT /note="nonfunctional capsid protein due to mutation" XX SQ Sequence 1914 BP; 563 A; 468 C; 337 G; 546 T; 0 other; fj263351 Length: 1914 18-NOV-2009 Type: N Check: 6951 .. 1 atggaaagat caactttgat caatttactt ctgttacaca aatttgaaca 51 caagattaac actgaaggaa tcattgttgt gcacggaatt gctggaactg 101 ggaaaaccac attgcttagg actttatttt ctgcataccc tagcttagtt 151 ataggttcac ctaggccttg ttacttagat aaagctaata aaatttcaca 201 agtttgcctt tcttgttttc caaatacttt gtgtgacatt gttgacgagt 251 accatctctt agaaagtttt cctgaaccaa aactagccat ttttggtgac 301 ccctgtcagt gcacttacat tgaaaggttg agaacaccca actacacatc 351 cttcagaaca caccgatttg gcaaatccac tgctgctcta ctaaacaagt 401 tattcgatct taacattgag tcagtcaaag cacaagacga cacagtagaa 451 tactttgatc ctttcgcagt ggacccctct gaacacattt ctgcttcaga 501 aaaagaagtt ttggaatttg taggtgatca agttgagact acaagctctg 551 aagaactaac tggtctcgag tttagtgaag ttactttcta ctgtaccaca 601 cttgctggtg ctgttcaaga aaatcctgcc aaaaccttca tttcactcac 651 tagacacact tcaaagctca caattggtga actaaatgcc aggtctgact 701 cctagagctg atcttactga cacgtataaa atcattgcta tagcctttct 751 actgtcagct tgcatttact tccaaaacag tcattatcaa ccagttgcag 801 gtgataattt gcacagacta ccctttggtg gtcagtatca agacggaact 851 aagaagattt cttactttcc gcagcaacaa tcctactttc actcaggaaa 901 caagcttaat gtcctcatac ttatcttcat tcttacactg ggtattgtcc 951 tcaccaataa atttagtttt agcattagcc gtaatactca ccagcatcat 1001 tgctacaaca cacattctgc aacccaaaca ggtcaatcag tgccaggtca 1051 tcattgacgg tgcagccata gttataacaa attgtccaaa cacacccgaa 1101 gttcttaaag caatcaactt ctccccttgg aacgggttaa gttttcccca 1151 attgtgaaat catatttgtt atctagttaa atttaaacaa tttaactcaa 1201 ctatggaaaa ccaacctaca gcttctaacc catcagatgt accaccaact 1251 gctgctcaag ctggtgccca gagcccagcc gacttctcaa atcctaatac 1301 agctccttcc ctaagtgatt tgaagaagat caaatacgtg tcaactgtca 1351 cttcagttgc cacgcctgct gaaattgagg cccttggcaa gatctttact 1401 gccatgggtt tagcagccaa tgagaccgga cctgccatgt gggacctcgc 1451 tcgtgcttat gctgatgtgc aaagttcaaa atctgcacaa cttataggtg 1501 ccacaccatc caaccctgct ttgtctagac gtgcacttgc tgcacagttt 1551 gatcgtatca atatcacacc cagacaattc tgcatgtatt ttgcaaaaat 1601 tgtttggaac atactgttag acagcaatgt gccacctgcc aactgggcaa 1651 aattgggcta tcaggaagat accaagtttg ctgcttttga cttctttgat 1701 ggagtcacaa atccagctag tctacagcct gcagatggcc taatcaggca 1751 gcccaatgaa aaagagctct gctcactcgg ttgctaaata tggtgccctt 1801 gcccgccaga aaatatccac tggtaactac atcaccaccc ttggtgaagt 1851 tacacgtggt cacatgggcg gcgccaaccc tatgtacgca attgatgcac 1901 ctcatgaact ttaa