Sequence of DPV Tomato leaf curl Ghana virus
Tomato leaf curl Nigeria virus-[Nigeria:2006], complete sequence.
ACC No: FJ685621
Dated: 2012-02-24 | Length: 2784 | CRC: 1407041231
ID FJ685621; SV 1; circular; genomic DNA; STD; VRL; 2784 BP.
XX
AC FJ685621;
XX
DT 08-MAR-2009 (Rel. 100, Created)
DT 24-FEB-2012 (Rel. 111, Last updated, Version 3)
XX
DE Tomato leaf curl Nigeria virus-[Nigeria:2006], complete sequence.
XX
KW .
XX
OS Tomato leaf curl Nigeria virus-[Nigeria:2006]
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
XX
RN [1]
RP 1-2784
RX PUBMED; 22057578.
RA Kon T., Gilbertson R.L.;
RT "Two genetically related begomoviruses causing tomato leaf curl disease in
RT Togo and Nigeria differ in virulence and host range but do not require a
RT betasatellite for induction of disease symptoms";
RL Arch. Virol. 157(1):107-120(2012).
XX
RN [2]
RP 1-2784
RA Kon T., Rojas M.R., Gilbertson R.L.;
RT "Molecular characterization of tomato-infecting Begomovirus from Nigeria";
RL Unpublished.
XX
RN [3]
RP 1-2784
RA Kon T., Rojas M.R., Gilbertson R.L.;
RT ;
RL Submitted (30-JAN-2009) to the INSDC.
RL Department of Plant Pathology, University of California-Davis, One Shields
RL Avenue, Davis, CA 95616, USA
XX
FH Key Location/Qualifiers
FH
FT source 1. .2784
FT /organism="Tomato leaf curl Nigeria virus-[Nigeria:2006]"
FT /host="tomato"
FT /mol_type="genomic DNA"
FT /country="Nigeria"
FT /collection_date="2006"
FT /db_xref="taxon:614034"
FT gene 176. .526
FT /gene="V1"
FT CDS 176. .526
FT /codon_start=1
FT /gene="V1"
FT /product="V1"
FT /db_xref="GOA:C0L9G0"
FT /db_xref="InterPro:IPR002511"
FT /db_xref="InterPro:IPR005159"
FT /db_xref="UniProtKB/TrEMBL:C0L9G0"
FT /protein_id="ACN43233.1"
FT /translation="MWDPLLNEFPDSVHGFRCMLGIKYLQLLEEEYEPNTLGHDLIRDL
FT ISVIRAKNYVEATRRYNNFHARLEGASSSELRQPLHQPCCCPHCPRHKQASFVDLSAHV
FT SKAQNVPDVQNP"
FT gene 336. .1109
FT /gene="V2"
FT CDS 336. .1109
FT /codon_start=1
FT /gene="V2"
FT /product="coat protein"
FT /db_xref="GOA:C0L9G1"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProtKB/TrEMBL:C0L9G1"
FT /protein_id="ACN43234.1"
FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYTSRAAVPTVRGISKRRSW
FT TYRPMYRKPRMYRMFRTPDIPRGCEGPCKVQSYEQRDDVKHVGIVRCVSDVTRGSGLTH
FT RVGKRFCIKSIYILGKVWMDENIKKQNHTNNVMFFLVRDRRPYGSPSDFGQIFNMFDNE
FT PSTATIKNDLRDRYQVLRKFSATVIGGPSGCKEQALVKRFFKVNNHVVYNHQEEAKYAN
FT HTENALLLYMACTHASNPVYATLKIRIYFYDAVTN"
FT gene complement(1106. .1510)
FT /gene="C3"
FT CDS complement(1106. .1510)
FT /codon_start=1
FT /gene="C3"
FT /product="C3"
FT /db_xref="GOA:C0L9G2"
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProtKB/TrEMBL:C0L9G2"
FT /protein_id="ACN43238.1"
FT /translation="MDSRTGELITAHQARNGVFIWEIQNPLYFKITNHDERPFNYQHDI
FT ITVQIRFNHNLRKALGIHKCFLNFKVWTSLRPQTGRFLRVFRVQVLKYLDNLGVISINT
FT IIRAVDHVLYNVLVNTIDVVETHEIKFNIY"
FT gene complement(1251. .1658)
FT /gene="C2"
FT CDS complement(1251. .1658)
FT /codon_start=1
FT /gene="C2"
FT /product="C2"
FT /db_xref="GOA:C0L9G3"
FT /db_xref="InterPro:IPR000942"
FT /db_xref="UniProtKB/TrEMBL:C0L9G3"
FT /protein_id="ACN43237.1"
FT /translation="MRPSSPSTSHSTQVPIKVQHRIAKKKVVRRKRVDLECGCSYFIHI
FT NCSNHGFTHRGTHHCASSSEWRFYLGDTKSPVFQDNQPRRETVQLPTRHNHSTNQVQPQ
FT PAEGVGDSQVFSELQSLDELTPSDWSFLKGI"
FT gene complement(1567. .2646)
FT /gene="C1"
FT CDS complement(1567. .2646)
FT /codon_start=1
FT /gene="C1"
FT /product="replication-associated protein"
FT /db_xref="GOA:C0L9G4"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="InterPro:IPR022690"
FT /db_xref="InterPro:IPR022692"
FT /db_xref="UniProtKB/TrEMBL:C0L9G4"
FT /protein_id="ACN43235.1"
FT /translation="MAPPKKFRINSKNYFLTFPKCSISKEEALEQLLKLETPTNKKYIK
FT ICRELHEDGQPHLHVLLQFEGKYNCQNQRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYI
FT DKDGDTLEWGEFQIDGRSARGGQQTANDAYAAALNAGSKAEALRVIRELAPKDFVLQFH
FT NLNNNLDRIFQEPPAPYVSPFLCSSFNQVPEELEEWVSENVSDAAARPWRPNSIVIEGD
FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEEKNASLKAWAIKNATFVTLNEPL
FT YSSAHQSPAPHREEESSEA"
FT gene complement(2187. .2489)
FT /gene="C4"
FT CDS complement(2187. .2489)
FT /codon_start=1
FT /gene="C4"
FT /product="C4"
FT /db_xref="InterPro:IPR002488"
FT /db_xref="UniProtKB/TrEMBL:C0L9G5"
FT /protein_id="ACN43236.1"
FT /translation="MASLIFTCFCSSKANTTAKIRDSSTWCPQPGQHISIQTYRELNPA
FT PTSSPTSTRMEIHSNGESSRSMGDLQEEGNRQPMTLTPQRLTQEVRQRLLGLYGN"
XX
SQ Sequence 2784 BP; 746 A; 586 C; 613 G; 839 T; 0 other;
fj685621 Length: 2784 24-FEB-2012 Type: N Check: 9822 ..
1 accggtgggc gcgaaaaaaa aaaaagtggt ccccttacac gctcgaaagc
51 aaaagtaaag aaatcagtgg tccccgtcca ctaataaatg tcagccaatc
101 agaatgaagc ctgaaagctt tcttatttag attttgtttt tatatacttc
151 ctcgccaagt agttattatt gcaacatgtg ggatccatta ttgaacgagt
201 tcccagactc ggttcatggt tttcgttgta tgctgggtat aaaatatcta
251 cagcttttag aagaggagta cgagcccaat actttgggcc acgatttaat
301 tagagatctc atatctgtca ttcgggctaa gaattatgtc gaagcgaccc
351 ggcgatataa taatttccac gcccgtctcg aaggtgcgtc gtcgtctgaa
401 cttcgacagc ccctacacca gccgtgctgc tgtccccact gtccgaggca
451 taagcaagcg tcgttcgtgg acttatcggc ccatgtatcg aaagcccaga
501 atgtaccgga tgttcagaac ccctgacatc cctcgtggat gtgaaggccc
551 atgtaaggtc cagtcgtatg agcagagaga tgatgtcaag cacgtgggta
601 tagttcgatg tgttagtgat gtgacccgtg ggtccggtct gactcataga
651 gtagggaaga gattttgcat taagtctatt tatatattag gtaaagtttg
701 gatggacgaa aacatcaaga agcagaatca tactaacaat gttatgtttt
751 tcttagttcg tgatcgtagg ccttatggca gcccaagtga ttttggacag
801 atttttaaca tgtttgacaa cgagcccagt acagccacaa tcaagaatga
851 tctcagagac cgttatcaag tgctgcgtaa attcagtgct actgttattg
901 gtggtccctc tggatgcaag gaacaggctt tagtgaagag attttttaaa
951 gtaaacaatc atgtcgttta taatcatcag gaggaggcta aatatgccaa
1001 ccatactgag aatgctttgt tgttgtatat ggcttgtact catgcctcta
1051 atccagtgta tgctactctg aaaatacgca tctatttcta cgatgcagtt
1101 acgaattaat aaatattaaa ttttatttca tgtgtttcga caacgtcgat
1151 tgtatttaca agaacgttat acagtacatg atcaacagct ctaataattg
1201 tattaattga aattacaccc aaattatcta aatactttaa cacttgaacc
1251 ctaaataccc ttaagaaacg accagtctga gggcgtaagc tcgtccagac
1301 tttgaagttc agaaaacact tgtgaatccc caacgccttc cgcaggttgt
1351 ggttgaacct gatttgtact gtgattatgt cgtgttggta gttgaacggt
1401 ctctcgtcgt ggttggttat cttgaaatac aggggatttt gtatctccca
1451 gataaaaacg ccattccgag cttgatgcgc agtgatgagt tcccctgtgc
1501 gtgaatccat ggttactgca gttaatatgt atgaagtacg agcacccgca
1551 ctctaagtcc actctcttac gcctcactac tttcttcttc gcgatgcggt
1601 gctggacttt gatgggcact tgagtagagt ggctcgttga gggtgacgaa
1651 ggtcgcattt tttatagccc aggcttttag tgatgcattc ttttcctcgt
1701 ctagatactc tttatatgat gatgttggac ctggattgca gaggaagata
1751 gtgggaattc cacctttaat ttgaatgggc ttcccgtact tggtgttgct
1801 ttgccagtct ctttgggccc ccataaattc tttgaagtgt ttgaggtaat
1851 ggggatcgac gtcatcaatg acgttatacc aagcatcatt tgaatacacc
1901 tttgggctaa gatcaagatg cccacacaag taattgtgtg gacctaatga
1951 cctagcccac atcgtcttgc cggtacgact atcaccctca ataacaatac
2001 tattcggtct ccatggccgc gcagcggcat cgctcacatt ctcagagacc
2051 cactcttcaa gttcttccgg aacttgatta aaagaagaac ataaaaaagg
2101 agaaacataa ggagccggag gctcctgaaa aattctatct aaattattat
2151 ttaaattatg aaattgtaat acaaaatctt tgggagctaa ttcccgtata
2201 accctaagag cctctgcctt acttcctgcg ttaagcgctg cggcgtaagc
2251 gtcattggct gtctgttgcc ctcctcttgc agatctccca tcgatctgga
2301 actctcccca ttcgagtgta tctccatcct tgtcgatgta ggacttgacg
2351 tcggagctgg atttagctcc ctgtatgttt ggatggaaat gtgctgacct
2401 ggttggggac accaggtcga agaatctctg attttggcag ttgtatttgc
2451 cttcgaactg cagaagcacg tgaagatgag gctggccatc ctcgtgaagt
2501 tctctgcaga tcttgatata ttttttattc gttggggttt ctagttttag
2551 aagttgctct agggcttctt ctttagaaat agagcatttt gggaaagtga
2601 ggaagtagtt tttggaattt attctaaatt tctttggagg agccatatgg
2651 tcaactagca ccaattgact gccctggata cttctcccct gttaattggg
2701 gttctatata tacttagcac caaatggcat aatggtaata ctcccaaaaa
2751 atttgaaccc ccaaagcgcc caccgaataa tatt