Sequence of DPV Squash leaf curl China virus
Squash leaf curl China virus [India:Varanasi:Pumpkin] segment DNA-B, complete sequence.
ACC No: FJ859881
Dated: 2009-10-28 | Length: 2704 | CRC: -709144334
ID FJ859881; SV 1; circular; genomic DNA; STD; VRL; 2704 BP.
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AC FJ859881;
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DT 28-OCT-2009 (Rel. 102, Created)
DT 28-OCT-2009 (Rel. 102, Last updated, Version 1)
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DE Squash leaf curl China virus [India:Varanasi:Pumpkin] segment DNA-B,
DE complete sequence.
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KW .
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OS Squash leaf curl China virus [India:Varanasi:Pumpkin]
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2704
RA Singh A.K., Mishra K.K., Chatopadhyay B., Chakraborty S.;
RT "Biological and molecular characterization of a begomovirus associated with
RT yellow mosaic vein mosaic disease of pumpkin from Northern India";
RL Virus Genes 39(3):359-370(2009).
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RN [2]
RP 1-2704
RA Singh A.K., Chatopadhyay B., Chakraborty S.;
RT ;
RL Submitted (24-MAR-2009) to the EMBL/GenBank/DDBJ databases.
RL School of Life Sciences, Jawaharlal Nehru University, New Delhi, Delhi
RL 110067, India
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FH Key Location/Qualifiers
FH
FT source 1. .2704
FT /organism="Squash leaf curl China virus
FT [India:Varanasi:Pumpkin]"
FT /segment="DNA-B"
FT /host="pumpkin"
FT /isolate="Varanasi"
FT /mol_type="genomic DNA"
FT /country="India"
FT /collected_by="Dr Achuit Kumar Singh"
FT /db_xref="taxon:679172"
FT gene 470. .1276
FT /gene="BV1"
FT CDS 470. .1276
FT /codon_start=1
FT /gene="BV1"
FT /product="nuclear shuttle protein"
FT /note="nucleoprotein; required for movement of viral DNA
FT from nucleus to cytoplasm and vice versa"
FT /protein_id="ACX33150.1"
FT /translation="MAFTTPYSSARRYSSSTNRLSNASKKLKFWKSRKYHGFMRYRNVN
FT STGRIPTDLFGDPISRQYTRKEICETQQGSEYVLQNNRYMTSYVTYPAKTRTGTDNRVR
FT SYIKLTGLTMSGTFGIRCSDLMTDVDQPTGLYGVVSIVIVRDKSPKIYSTAQPLMPFVD
FT LFGSVNSCRGTLKVAERHRERFVVLNQSSILINTPHCTAMKKFSVRNCIPRTYSTWVTF
FT KDEEEDSSTGLYSNTLRNAILIYYVWLSDVSSQLDMYSNVMLNYIG"
FT gene complement(1330. .2175)
FT /gene="BC1"
FT CDS complement(1330. .2175)
FT /codon_start=1
FT /gene="BC1"
FT /product="movement protein"
FT /note="required for viral DNA cell to cell movement"
FT /protein_id="ACX33151.1"
FT /translation="MSVRNDNMGLGVGGYIESDRVEYALTNDAAEVTLTFPFNVEQKIS
FT QLRNRCMKIDHVLLEYRSQVPINAVGHVVIEIHDMRLTEGDTKQAEFTIPIKCNCNLHY
FT YSSTYFSVKDKNPWRVEYRVENTNVVNGVHFCKMLGKLKLSSAKHSTDVEFRAPRIEIQ
FT SKEFTVNDIDFWSVGSKPQTRRLVDGSRLMGHSSRSLRVPHLAIGPNESWASRSEIGLG
FT SVTSRPYKNLSGLDESAIDPGPSASQVGSITRDGITEIITKTVEQCTKSNVNAPLTKGV
FT "
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SQ Sequence 2704 BP; 752 A; 557 C; 517 G; 878 T; 0 other;
fj859881 Length: 2704 28-OCT-2009 Type: N Check: 1927 ..
1 accgaaaggc cgcgcttttt ttttcctcaa atctggccgt tgatttaaac
51 taatgcgcaa cgcgatggac aacacgtgtc atctgacaca tcctttatta
101 aagtaaagga ttgtacgatt tcataattcg cacatggtgg aacccattgt
151 ctagatatga aatatctagg aaattgccaa agtggtcccc cgatgtaaaa
201 agctgctgtt tatattgcgt ttgaagtgtg gtcccggtat taattcataa
251 tgcattcgtt accgttgctt tatcatatct agtgtatttc gaacggctga
301 gatcaaaata tgaatttaac actcatctca ccgtccgctt tgtctacatg
351 tttgtaattc catcaaacat gttttatatt ccacgttttg tgctaacatt
401 gtactgaatt atatcattat ataattcact ttcgtgcata gtcgttgcta
451 cttctattgt ttgatccaaa tggcttttac tacaccttat tcttctgcaa
501 gacgatattc atcgtcaaca aacagattat ccaacgcaag caagaaattg
551 aaattttgga agtctcgaaa gtaccatgga tttatgcgtt atcggaatgt
601 gaattccaca ggcaggatcc caactgacct gttcggtgat cctatctcca
651 gacaatatac gcgtaaggaa atttgtgaaa ctcaacaggg atctgaatat
701 gttctccaga acaatcgtta tatgacatcg tatgtcactt atcctgctaa
751 aacccgaact ggaacggata acagggttcg ttcatatatc aagcttactg
801 gtcttaccat gtccggaaca ttcggcattc gatgttccga tttgatgacg
851 gatgtcgatc aacccactgg actctatggt gtcgtgtcca ttgttatcgt
901 ccgtgataaa tcaccgaaga tttattcaac tgcacaacca cttatgccat
951 ttgttgattt atttggttcg gttaattcat gtcgtggaac tcttaaggtg
1001 gcagaacgcc accgagaaag gtttgtggtg ctgaatcaat cttccatatt
1051 gataaatact cctcattgca ctgcaatgaa gaaattctca gttcgtaact
1101 gcatcccgcg cacctactct acctgggtca ctttcaagga tgaagaagag
1151 gatagttcca ccggactata ctcaaacacg cttcgaaatg caattctcat
1201 atattatgtg tggttaagcg atgtatcttc tcaacttgat atgtacagca
1251 atgtaatgtt aaattacatt ggttagtgta ttcacgatgc tgaaaatatc
1301 ttccattaat aaattttgca ataattttat catacgcctt tagttaatgg
1351 ggcgtttaca ttcgatttcg tacattgttc taccgtttta gttattattt
1401 cagttatccc gtccctcgta atgcttccca cctgtgatgc cgatggacct
1451 ggatcaattg cggattcatc taatccgctg aggtttttat acggtctgct
1501 ggtgactgaa cccagcccaa tttccgatct acttgcccac gattcgttcg
1551 gaccaatcgc aagatgtggg acgcgtaatg atctagagct gtgacccatg
1601 agtcttgatc catctacgag ccgtcttgtt tgtggttttg agcccactga
1651 ccagaaatct atgtcgttaa cggtgaattc tttgctctgt atctctattc
1701 ttggtgctcg gaattcgacg tcagtcgaat gtttagccga ggatagtttt
1751 aatttaccaa gcatcttaca gaaatgaact ccatttacta cgttcgtgtt
1801 ctccactctg tactcaactc tccaaggatt tttatcctta acggagaagt
1851 acgtggatga gtagtagtgc agattacagt tgcatttaat cggaattgtg
1901 aattctgctt gtttcgtgtc cccctctgtc aatctcatgt cgtgaatttc
1951 aataaccaca tgcccaactg cattaattgg tacttgactg cgatattcaa
2001 gcagaacgtg atcaattttc atgcatctgt ttctcaattg actgatcttc
2051 tgttcgacat tgaaggggaa cgtcagagtg acttccgcag cgtcgtttgt
2101 gagagcgtac tctacgcgat ccgattctat gtaccctcca acaccaagac
2151 ccatgttatc atttcttact gacattttgg cagcgcagca gaaatggctc
2201 cgcaggtgaa taaactatga aacggatgtt aaagaatgtt tggaaacgaa
2251 caaagtacag tttgaaatga aacacaggac aactgtgttt ccaatgaaca
2301 tctaacactt atttataacc gttcaattat tgtgttactt gctccaaagg
2351 agtaagagaa ttgaaattgt gaccgacgat ctatcatctt tattattttg
2401 aacggctgag atcaaaatat gaattgcttt ttaattggcc cattatcata
2451 aagcccaatt tgtcaaaatt ggaaagtgat atatatttct ttgggctatt
2501 cagaaaatag cccaccaaat agttatacag cattatatca aaataaggac
2551 actgtttcaa gattatttat atggaaagtt agagagaagt tggacattct
2601 ctctctagac accgattcgg ggtctctcca aaactatggt atattggggt
2651 atggagtctt atatatactt tagagaacgt catagcggcc tttcgtttaa
2701 tatt