Sequence of DPV Citrus tristeza virus

Citrus tristeza virus isolate 390-5 p23 gene, complete cds.

ACC No: FJ860142

Dated: 2009-04-26 | Length: 630 | CRC: -1909023611

                
ID   FJ860142; SV 1; linear; genomic RNA; STD; VRL; 630 BP.
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AC   FJ860142;
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DT   26-APR-2009 (Rel. 100, Created)
DT   26-APR-2009 (Rel. 100, Last updated, Version 1)
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DE   Citrus tristeza virus isolate 390-5 p23 gene, complete cds.
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KW   .
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OS   Citrus tristeza virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae;
OC   Closterovirus.
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RN   [1]
RP   1-630
RA   Scott K.A., Pietersen G.;
RT   "Characterization of the p23 gene of South African Citrus tristeza virus
RT   isolates";
RL   Unpublished.
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RN   [2]
RP   1-630
RA   Scott K.A., Pietersen G.;
RT   ;
RL   Submitted (26-MAR-2009) to the EMBL/GenBank/DDBJ databases.
RL   Microbiology, University of Pretoria, Lunnon Rd, Pretoria, Gauteng 0002,
RL   South Africa
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FH   Key             Location/Qualifiers
FH
FT   source          1. .630
FT                   /organism="Citrus tristeza virus"
FT                   /host="Citrus aurantifolia"
FT                   /isolate="390-5"
FT                   /mol_type="genomic RNA"
FT                   /country="South Africa"
FT                   /collection_date="29-Aug-2006"
FT                   /db_xref="taxon:12162"
FT   CDS             1. .630
FT                   /codon_start=1
FT                   /product="p23"
FT                   /protein_id="ACP19719.1"
FT                   /translation="MDDTSGQTFVSVNLSDESNTASTAVRTVSSEADRLEFLRKMNPFI
FT                   IDALVRKTNYQGARFRARIIGVCVDCGRKHDKGLKTERKCKVNNTQSQNEVAHMLMHDP
FT                   VRYLNKGKARAFSNAEMFAIDLVMYTKEKQLAVNLAAEREKTRLARRHPMRSPEETPEH
FT                   YKFGITAKAMLPNINAVDVGDNEDTSSEYPVSLSVSDGVLREHHFI"
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SQ   Sequence 630 BP; 190 A; 125 C; 161 G; 154 T; 0 other;

fj860142 Length: 630  26-APR-2009  Type: N  Check: 9290  ..

       1  atggacgata ctagcggaca aactttcgtt tctgtgaacc tttctgacga
      51  aagcaacaca gcaagtactg cagttagaac cgtaagttcg gaagcggatc
     101  gcttggaatt tttacgaaaa atgaatccct ttatcatcga cgctttggta
     151  cggaaaacca attatcaggg tgctcgcttt cgcgcaagaa taataggagt
     201  gtgcgtagat tgtggtagaa aacacgataa ggggttgaag accgaacgta
     251  aatgtaaggt caacaataca cagtctcaga acgaggtggc gcatatgtta
     301  atgcacgatc ccgttaggta tttaaataaa ggaaaggcta gagccttttc
     351  taacgcagag atgtttgcga tcgatttggt tatgtacacc aaggaaaagc
     401  agttggcggt taatttggcc gctgaaaggg agaagacgag actggctcgt
     451  agacacccga tgcgttctcc ggaagaaact ccggaacact ataaattcgg
     501  tataactgct aaagcaatgt taccgaacat caacgctgtg gacgttggtg
     551  ataacgagga cacttcgtcg gagtacccag tgagtctgag tgtttctgac
     601  ggagttctcc gtgaacacca cttcatctga