Sequence of DPV Maize streak virus
Maize streak virus isolate MSV-A_ZA_New_D9-2006, complete genome.
ACC No: FJ882126
Dated: 2009-12-06 | Length: 2689 | CRC: -1128417677
ID FJ882126; SV 1; circular; genomic DNA; STD; VRL; 2689 BP.
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AC FJ882126;
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DT 06-DEC-2009 (Rel. 103, Created)
DT 06-DEC-2009 (Rel. 103, Last updated, Version 1)
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DE Maize streak virus isolate MSV-A_ZA_New_D9-2006, complete genome.
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KW .
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OS Maize streak virus
OC Viruses; ssDNA viruses; Geminiviridae; Mastrevirus.
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RN [1]
RP 1-2689
RX PUBMED; 19692547.
RA Harkins G.W., Martin D.P., Duffy S., Monjane A.L., Shepherd D.N.,
RA Windram O.P., Owor B.E., Donaldson L., van Antwerpen T., Sayed R.A.,
RA Flett B., Ramusi M., Rybicki E.P., Peterschmitt M., Varsani A.;
RT "Dating the origins of the maize-adapted strain of maize streak virus,
RT MSV-A";
RL J. Gen. Virol. 90(PT 12):3066-3074(2009).
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RN [2]
RP 1-2689
RA Harkins G.W., Martin D.P., Monjane A.L., Shepherd D.N., Windram O.P.,
RA Owor B.E., Donaldson L., van Antwerpen T., Sayed R.A., Flett B., Ramusi M.,
RA Rybicki E.P., Peterschmitt M., Varsani A.;
RT ;
RL Submitted (02-APR-2009) to the EMBL/GenBank/DDBJ databases.
RL Electron Microscope Unit, University of Cape Town, Private Bag, Cape Town,
RL WP 7701, South Africa
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FH Key Location/Qualifiers
FH
FT source 1. .2689
FT /organism="Maize streak virus"
FT /host="maize"
FT /isolate="MSV-A_ZA_New_D9-2006"
FT /mol_type="genomic DNA"
FT /country="South Africa"
FT /lat_lon="29.81 S 30.89 E"
FT /collection_date="2006"
FT /db_xref="taxon:10821"
FT CDS 157. .462
FT /codon_start=1
FT /product="movement protein"
FT /protein_id="ACZ04241.1"
FT /translation="MDPQNALYYQPRVPTAAPTSGGVPWSRVGEVAILSFVALICFYLL
FT YLWVLRDLILVLKARQGRSTEELIFGGQAVDRSNPIPNLPAPPSQGNPGPFVPGTG"
FT CDS 473. .1207
FT /codon_start=1
FT /product="coat protein"
FT /protein_id="ACZ04242.1"
FT /translation="MSTSKRKRGDDSNWSKRVPKKKPSSAGLKRAGSKADRPSLQIQTL
FT QHAGTTMITVPSGGVCDLINTYARGSDEGNRHTSETLTYKIAVDYHFVADAAACRYSNT
FT GTGVMWLVYDTTPGGQAPTPQTIFAYPDTLKAWPATWKVSRELCHRFVVKRRWLFNMET
FT DGRIGSDIPPSNASWKPCKRNIYFHKFTSGLGVRTQWKNVTDGGVGAIQRGALYMVIAP
FT GNGLTFTAHGQTRLYFKSVGNQ"
FT CDS complement(1717. .2535)
FT /codon_start=1
FT /product="RepA"
FT /protein_id="ACZ04243.1"
FT /translation="MASSSSNRQFSHRNANTFLTYPKCPENPEIACQMIWELVVRWIPK
FT YILCAREAHKDGSLHLNALLQTEKPVRISDSRFFDINGFHPNIQSAKSVNRVRDYILKE
FT PLAVFERGTFIPRKSPFLGKSDSEVKEKKPSKDEIMRDIISHATSKEEYLSMIQKELPF
FT DWSTKLQYFEYSANKLFPEIQEEFTNPHPPSSPDLLCNESINDWLQPNIFQVSPEAYML
FT LQPTCYTLEDAISDLQWMDSVSSHQMKDQESRASTSSAQQEPENLLGPEA"
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SQ Sequence 2689 BP; 689 A; 632 C; 692 G; 676 T; 0 other;
fj882126 Length: 2689 06-DEC-2009 Type: N Check: 3403 ..
1 taatattacc gcgccttctt ttcctgcgat ggcccggtag ggaccgagcg
51 ctttgattta aagcctggtt ctgctttgtg tgatttatct aaagcagccc
101 aatctaaaga aaccggtccc gggcactata aattgcctaa caagtgcgat
151 tcattcatgg atccacagaa cgccctgtat tatcagccgc gggtacccac
201 agcagctccg acatccggag gagtgccgtg gagtcgcgta ggcgaggtag
251 ctattttgag ctttgttgca ttgatttgct tttacctgct ttacctttgg
301 gtgctgagag accttatctt agttctgaag gctcgacaag gcagatccac
351 ggaggagctg atatttggtg gacaagctgt ggataggagc aaccctatcc
401 ctaatctacc tgcaccacca agtcagggca atcccgggcc atttgttcca
451 ggcacgggat aagcaatcag ccatgtccac gtccaagagg aagcggggag
501 atgattcgaa ttggagtaag cgggtgccta agaagaagcc ttcttcagct
551 gggctgaaga gggctggaag caaggccgat aggccatccc tccaaatcca
601 gacactccag catgctggga ccaccatgat aacggtccca tccggaggag
651 tatgtgacct catcaacacc tatgcccgag gatctgacga gggcaaccgc
701 cacaccagcg agactctgac gtacaagatc gccgtcgact accacttcgt
751 tgctgatgcg gcagcctgcc gctactccaa caccggaacc ggtgtaatgt
801 ggctggtgta tgacaccact cccggcggac aagctccgac cccgcaaact
851 atatttgcct accctgacac gctaaaagcg tggccggcca catggaaagt
901 gagccgggag ctgtgtcatc gcttcgtggt gaaacggcgg tggttgttca
951 acatggagac cgacggtcgg attggatcgg atatccctcc ctcgaatgca
1001 agttggaagc cttgcaagcg caacatatac ttccacaagt tcacgagtgg
1051 gttgggagtg agaacgcagt ggaagaatgt aacggacgga ggagttggtg
1101 ccatccagag aggagccttg tacatggtca ttgcccccgg caatggcctt
1151 acttttactg cccatgggca gacccgtctg tactttaaga gtgttggcaa
1201 ccagtaatga ataaaaacgc ccgttttatt atatttgatg aatgctgaaa
1251 gcttacatta atatgtcgtg cgatggcacg aaaaaacaca cgcaaacaat
1301 acaggggggt agtcggcggg cggctaaggg tggtgctcgg cgggcagaac
1351 atcgaaaaat caagatctat atgaattaca cttcctccgt aggaggaagc
1401 acagggggag aataccattt ctcccccggc gacataatgt aaatgatgca
1451 gtttgcctcg aaatactcca gctgccctgg agtcatttcc ttcatccaat
1501 cttcatccga gttggcgagg attattgtag gcttagactt cttctgcacc
1551 tttttcttct taccatactt ggggtttaca atgaaatcct tctgacagcc
1601 aaccaactgt ttccaacaag gacagaattt aaacggaata tcatctacga
1651 tgttgtagat tgcgtcttcg ttgtatgaat accaatcaac attattttgc
1701 cagtaattat gaacccctag gcttctggcc caagtagatt ttccggttct
1751 tgttgggccg acgatgtaga ggctctgctt tcttgatctt tcatctgatg
1801 actggataca gaatccatcc attggaggtc agaaattgca tcctcgaggg
1851 tataacaggt aggttgaagg agcatgtaag cttcgggact aacctggaag
1901 atgttaggct ggagccaatc attgattgac tcattacaaa gtaaatcagg
1951 tgaggagggt ggatgaggat tggtgaactc ttcctgaatc tcagggaaaa
2001 gcttatttgc agagtattca aaatactgca attttgtgga ccaatcaaag
2051 ggaagctctt tctggatcat ggagaggtac tcttctttgg aagtagcgtg
2101 tgaaataatg tctcgcatta tttcatcttt agaaggcttt ttttccttta
2151 cctctgaatc agattttcct aggaaggggg acttcctagg aatgaaagta
2201 cctctctcaa acacagccag aggttccttg agaatgtaat ccctcacccg
2251 gttaactgac ttggcactct gaatatttgg gtgaaaccca tttatatcaa
2301 agaaccttga gtcagatatc cttaccggct tctctgtctg gagcaatgca
2351 tttaaatgca aacttccatc cttatgtgcc tctcgggcac atagaatgta
2401 cttgggaatc caacgaacga cgagctccca gatcatctga caggcgattt
2451 caggattttc tggacacttt ggataggtta ggaacgtgtt agcgttcctg
2501 tgtgagaact gacggttgga tgaggaggag gccatagccg acgacggagg
2551 ctgaggctga gggatggcag actgggagct ccaaactcta tagtatacct
2601 gtgcgccttc gaaatccgcc gctccttgtc ttatagtggt tgtaaatggg
2651 ccggaccggg ccggcccagc aggaaaagaa ggcgcgcac