Sequence of DPV Maize streak virus
Maize streak virus isolate MSV-A_ZA_Pot1_Riz48-2007, complete genome.
ACC No: FJ882128
Dated: 2009-12-06 | Length: 2690 | CRC: 1150829112
ID FJ882128; SV 1; circular; genomic DNA; STD; VRL; 2690 BP. XX AC FJ882128; XX DT 06-DEC-2009 (Rel. 103, Created) DT 06-DEC-2009 (Rel. 103, Last updated, Version 1) XX DE Maize streak virus isolate MSV-A_ZA_Pot1_Riz48-2007, complete genome. XX KW . XX OS Maize streak virus OC Viruses; ssDNA viruses; Geminiviridae; Mastrevirus. XX RN [1] RP 1-2690 RX PUBMED; 19692547. RA Harkins G.W., Martin D.P., Duffy S., Monjane A.L., Shepherd D.N., RA Windram O.P., Owor B.E., Donaldson L., van Antwerpen T., Sayed R.A., RA Flett B., Ramusi M., Rybicki E.P., Peterschmitt M., Varsani A.; RT "Dating the origins of the maize-adapted strain of maize streak virus, RT MSV-A"; RL J. Gen. Virol. 90(PT 12):3066-3074(2009). XX RN [2] RP 1-2690 RA Harkins G.W., Martin D.P., Monjane A.L., Shepherd D.N., Windram O.P., RA Owor B.E., Donaldson L., van Antwerpen T., Sayed R.A., Flett B., Ramusi M., RA Rybicki E.P., Peterschmitt M., Varsani A.; RT ; RL Submitted (02-APR-2009) to the EMBL/GenBank/DDBJ databases. RL Electron Microscope Unit, University of Cape Town, Private Bag, Cape Town, RL WP 7701, South Africa XX FH Key Location/Qualifiers FH FT source 1. .2690 FT /organism="Maize streak virus" FT /host="maize" FT /isolate="MSV-A_ZA_Pot1_Riz48-2007" FT /mol_type="genomic DNA" FT /country="South Africa" FT /lat_lon="26.77 S 27.13 E" FT /collection_date="2007" FT /db_xref="taxon:10821" FT CDS 157. .462 FT /codon_start=1 FT /product="movement protein" FT /protein_id="ACZ04247.1" FT /translation="MDPQNALYYQPRVPTAAPTSGGVPWSRVCEVAILSFVALICFYLL FT YLWVLRDLILVLKARQGRSTEELIFGGQAVDRSNPIPNLPAPPSQGNPGPFVPGTG" FT CDS 473. .1207 FT /codon_start=1 FT /product="coat protein" FT /protein_id="ACZ04248.1" FT /translation="MSTSKRKRGDDANWSKRVPKKKPSSAGLKRAGSKADRPSLQIQTL FT QHAGTTMITVPSGGVCDLINTYARGSDEGNRHTSETLTYKIAVYYHFVADAAACRYSNT FT GTGVMWLVYDTTPGGQAPTPQTIFAYPDTLKAWPATWKVSRELCHRFVVKRRWLFNMET FT DGRIGSDIPPSNTSWKPCKRNIYFHKFTSGLGVRTQWKNVTDGGVGAIQRGALYMVIAP FT GNGLTFTAHGQTRLYFKSVGNQ" FT CDS complement(1717. .2535) FT /codon_start=1 FT /product="RepA" FT /protein_id="ACZ04249.1" FT /translation="MASSSSNRQFSHRNANTFLTYPKCPENPEIACQMIWELVVRWIPK FT YILCAREAHKDGSLHLHALLQTEKPVRISDSRFFDINGFHPNIQSAKSVNRVRDYILKE FT PLAVFERGTFIPRKSPFLGKSDSEVKEKKPSKDEIMRDIISHATSKAEYLSMIQKELPF FT DWSTKLQYFEYSANKLFPEIQEEFTNPHPPSSPDLLCNESINDWLQPNIFQVSPEAYML FT LQPTCYTLEDAISDLQWMDSVSSHQMKDQESRASTSSGQQEPENLLGPEA" XX SQ Sequence 2690 BP; 695 A; 634 C; 684 G; 677 T; 0 other; fj882128 Length: 2690 06-DEC-2009 Type: N Check: 2703 .. 1 taatattacc gcgccttctt ttcctacgag gtcccggtag ggaccgagcc 51 ctttgattta aagcctggtt ctgctttgta tgatttatct aaagcagccc 101 aatctaaaga aaccggtccc gggcactata aattgcctaa caagtgcgat 151 tcattcatgg atccacagaa cgccctgtat tatcagccgc gggtacccac 201 agcagctccg acatccggag gagtgccgtg gagtcgcgta tgcgaggtag 251 ctattttgag ctttgttgca ttgatttgct tttacctgct ttacctttgg 301 gtgctgagag accttatctt agttctgaag gctcgacaag gcagatccac 351 ggaggagctg atatttggag gacaagctgt ggataggagc aaccctatcc 401 ctaatctacc agcaccacca agtcagggca atcccgggcc atttgttcca 451 ggtacgggat aagcaatcag ccatgtccac gtccaagagg aagcggggag 501 atgatgcgaa ttggagtaag cgggtgccta agaagaagcc ttcttcagct 551 gggctgaaga gggctggaag caaggccgat aggccatccc tccaaatcca 601 gacactccag catgctggga ccaccatgat aacggtccca tccggaggag 651 tatgtgacct catcaacacc tatgcccgag gatctgacga gggcaaccgc 701 cacaccagcg agactctgac gtacaagatc gccgtctact accacttcgt 751 tgctgacgcg gcagcctgcc gctactccaa caccggaacc ggtgtaatgt 801 ggctggtgta tgacaccact cccggcggac aagctccgac cccgcaaact 851 atatttgcct accctgacac gctaaaagcg tggccggcca catggaaagt 901 gagccgggag ctgtgtcatc gcttcgtggt gaaacggcga tggttgttca 951 acatggagac cgacggtcgg attggttcgg atatccctcc ctcgaataca 1001 agttggaagc cttgcaagcg caacatctac ttccacaagt tcacgagtgg 1051 gttgggagtg agaacgcagt ggaagaatgt aacggacgga ggagttggtg 1101 ccatccagag aggagccttg tacatggtca ttgccccagg caatggcctt 1151 acttttactg cccatgggca gacccgtctg tactttaaga gtgttggcaa 1201 ccagtaatga ataaaaactc ccgttttatt atatttgatg aatgctgaaa 1251 gcttacatta atatgtcgtg cgatggcacg aaaaaacaca cgcaaacaat 1301 acaggggggt agtcggcggg cggctaaggg tggtgctcgg cgggcagaac 1351 atcgaaaaat caagatctat atgaattaca cttcctccgt aggaggaagc 1401 acagggggag aataccactt ctcccccggc gacataatgt aaatgatgca 1451 gtttgcctcg aaatactcca gctgccctgg agtcatttcc ttcatccaat 1501 cttcatccga gttggcgagg attattgtag gcttagactt cttctgcacc 1551 tttttcttct taccatactt ggggtttaca atgaaatccc tctgacagcc 1601 aactaactgt ttccaacaag gacagaattt aaacggaata tcatctacga 1651 tgttgtagat tgcgtcttcg ttgtatgaag accaatcaac attattttgc 1701 cagtaattat gaacccctag gcttctggcc caagtagatt ttccggttct 1751 tgttggcccg acgatgtaga ggctctgctt tcttgatctt tcatctgatg 1801 actggataca gaatccatcc attggaggtc agaaattgca tcctcgaggg 1851 tataacaggt aggttgaagg agcatgtaag cttcgggact aacctggaag 1901 atgttaggct ggagccaatc attgattgac tcattacaaa gtaaatcagg 1951 tgaggagggt ggatgaggat tggtgaactc ttcctgaatc tcaggaaaaa 2001 gtttatttgc agagtattca aaatactgca attttgtgga ccaatcaaag 2051 ggaagctctt tctggatcat ggagaggtac tctgctttgg aagtagcgtg 2101 tgaaataatg tctcgcatta tttcatcttt tgaaggcttt ttttccttta 2151 cctctgaatc agattttcct aggaaggggg acttcctagg aatgaaagta 2201 cctctctcaa acacagccag aggttccttg agaatgtaat ccctcaccct 2251 gttaactgac ttggcactct gaatatttgg gtgaaaccca tttatatcaa 2301 agaaccttga gtcagatatc cttaccggct tctctgtctg aagcaatgca 2351 tgcaaatgca aacttccatc tttatgtgcc tctcgggcac atagaatgta 2401 cttgggaatc caacgaacga cgagctccca gatcatctga caggcgattt 2451 caggattttc tggacacttt ggataggtta ggaacgtgtt agcgttcctg 2501 tgtgagaact gacggttgga tgaggaggag gccatagccg acgacggagg 2551 ctgaggctga gggatggcag actgggagct ccaaactcta tagtatacct 2601 gtgcgccttc gaaatccgcc gctcccttgt tttatagtgg ttgtaaatgg 2651 gccggaccgg gccggcccag caggaaaaga aggcgcgcac