Sequence of DPV Maize streak virus

Maize streak virus isolate MSV-A_ZA_Wil_O38-1993, complete genome.

ACC No: FJ882139

Dated: 2009-12-06 | Length: 2690 | CRC: 688183537

                
ID   FJ882139; SV 1; circular; genomic DNA; STD; VRL; 2690 BP.
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AC   FJ882139;
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DT   06-DEC-2009 (Rel. 103, Created)
DT   06-DEC-2009 (Rel. 103, Last updated, Version 1)
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DE   Maize streak virus isolate MSV-A_ZA_Wil_O38-1993, complete genome.
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KW   .
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OS   Maize streak virus
OC   Viruses; ssDNA viruses; Geminiviridae; Mastrevirus.
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RN   [1]
RP   1-2690
RX   PUBMED; 19692547.
RA   Harkins G.W., Martin D.P., Duffy S., Monjane A.L., Shepherd D.N.,
RA   Windram O.P., Owor B.E., Donaldson L., van Antwerpen T., Sayed R.A.,
RA   Flett B., Ramusi M., Rybicki E.P., Peterschmitt M., Varsani A.;
RT   "Dating the origins of the maize-adapted strain of maize streak virus,
RT   MSV-A";
RL   J. Gen. Virol. 90(PT 12):3066-3074(2009).
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RN   [2]
RP   1-2690
RA   Harkins G.W., Martin D.P., Monjane A.L., Shepherd D.N., Windram O.P.,
RA   Owor B.E., Donaldson L., van Antwerpen T., Sayed R.A., Flett B., Ramusi M.,
RA   Rybicki E.P., Peterschmitt M., Varsani A.;
RT   ;
RL   Submitted (02-APR-2009) to the EMBL/GenBank/DDBJ databases.
RL   Electron Microscope Unit, University of Cape Town, Private Bag, Cape Town,
RL   WP 7701, South Africa
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FH   Key             Location/Qualifiers
FH
FT   source          1. .2690
FT                   /organism="Maize streak virus"
FT                   /host="maize"
FT                   /isolate="MSV-A_ZA_Wil_O38-1993"
FT                   /mol_type="genomic DNA"
FT                   /country="South Africa"
FT                   /lat_lon="33.96 S 22.59 E"
FT                   /collection_date="1993"
FT                   /db_xref="taxon:10821"
FT   CDS             157. .462
FT                   /codon_start=1
FT                   /product="movement protein"
FT                   /protein_id="ACZ04280.1"
FT                   /translation="MDPQNSFFVQPRVPTAAPTSGGVSWSRVGEVAILSFVALICFYLL
FT                   YLWVLRDLILVLKARQGRSTEELIFGGQAVDRSNPIPNLPAPPSQGNPGPFVPGTG"
FT   CDS             473. .1207
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /protein_id="ACZ04281.1"
FT                   /translation="MSTSKRKRGDDSNWNKRVPKKKPSSAGLKRAASKADRPSLQIQTL
FT                   QHAGTTMITVPSGGVCDLINTYARGSDEGNRHTSETLTYKIAVDYHFVADAAACRYSNT
FT                   GTGVMWLVYDTTPGGQAPTPQTIFAYPDTLKAWPATWKVSRELCHRFVVKRRWLFNMET
FT                   DGRIGSDIPPSNTSWKPCKRNIYFHKFTSGLGVRTQWKNVTDGGVGAIQRGALYMVIAP
FT                   GNGLTFTAHGQTRLYFKSVGNQ"
FT   CDS             complement(1717. .2535)
FT                   /codon_start=1
FT                   /product="RepA"
FT                   /protein_id="ACZ04282.1"
FT                   /translation="MASSSSNRQFSHRNANTFLTYPKCPENPEIACQMIWELVVRWIPK
FT                   YILCAREAHKDGSLHLHALLQTEKPVRISDSRFFDINGFHPNIQSAKSVNRVRDYILKE
FT                   PLAVFERGTFIPRKSPFLGKSDSEVKEKKPSKDEIMRDIISHSTSKEEYLSMIQKELPF
FT                   DWSTKLQYFEYSANKLFPEIQEEFTNPHPPSSPDLLCNESINDWLQPNIFQVSPEAYML
FT                   LQPTCYTLEDAISDLQWMDSVSSHQMKDQESRASTSSAQQEPENLLGPEA"
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SQ   Sequence 2690 BP; 693 A; 630 C; 684 G; 683 T; 0 other;

fj882139 Length: 2690  06-DEC-2009  Type: N  Check: 7000  ..

       1  taatattacc gcgccttctt ttcctgcgag ggcccggtag ggaccgagcg
      51  ctttgattta aagtttggtc ctgctttgtt tgatttatct aatgcagccc
     101  aatctaaaga aaccggtccc gggcactata aattgcctaa caagtgcgat
     151  tcattcatgg atccacagaa ctccttcttt gtacagccgc gggtacccac
     201  agcagctccg acatccggag gagtgtcgtg gagtcgcgta ggcgaggtag
     251  ctattttgag ctttgttgca ttgatttgct tttacctgct ttacctttgg
     301  gtgctgagag accttatctt agttctgaag gctcgacaag gcagatccac
     351  ggaggagctg atatttggag gacaagctgt ggataggagc aaccctatcc
     401  ctaatctacc agcaccacca agtcagggca atcccgggcc atttgttcca
     451  ggcacgggat aagcaatcag ccatgtccac gtccaagagg aagcggggag
     501  atgattcgaa ttggaataag cgggtgccta agaagaagcc atcttcagct
     551  ggtctgaaga gggctgcaag caaggccgat aggccatccc tccaaatcca
     601  gacactccag catgctggga ccaccatgat aacggtcccc tccggaggag
     651  tatgtgacct catcaacacc tatgcccgag gatctgacga gggcaaccgc
     701  cacaccagcg agactctgac gtacaagatt gccgtcgact accacttcgt
     751  tgccgacgcg gcagcctgcc gctactccaa taccggaacc ggtgtaatgt
     801  ggctggtgta tgacaccact cccggcggac aagctccgac cccgcaaact
     851  atatttgcct accctgacac gctaaaagcg tggccggcca catggaaagt
     901  gagccgggag ctgtgtcatc gcttcgtggt gaaacggcga tggttgttca
     951  acatggagac cgacggtcgg attggttcgg atatccctcc ttcgaataca
    1001  agttggaagc cttgcaagcg caacatctac ttccacaagt tcacgagtgg
    1051  gttgggagtg agaacgcagt ggaagaatgt aacggacgga ggagttggtg
    1101  ccatccagag aggagcgctg tacatggtta ttgcccccgg caatggcctt
    1151  acatttactg cccatgggca gacccgtctg tactttaaga gtgttggcaa
    1201  ccagtaatga ataaaaacgc ccgttttatt atatctgatg aatgctgaaa
    1251  gcttacatta atatgtcgtg cgatggcacg aaaaaacaca cgcaatcaat
    1301  acaggggggt agtcggcggg cggctaaggg tggtgctcgg cgggcaaaac
    1351  atcgaaaaat caagatctat atgaattaca cttcctccgt aggaggaagc
    1401  acagggggag aataccactt ctcccctggc gacataatgt aaatgatgca
    1451  gtttgcctcg aaatactcca gctgccctgg agtcatttcc ttcatccaat
    1501  cttcatccga gttggcgagg attattgtag gcttagactt cttctgcacc
    1551  tttttcttct taccatactt ggggtttaca atgaaatccc tctgacagcc
    1601  aactaactgt ttccaacaag gacagaattt aaacggaata tcatctacga
    1651  tgttgtagat tgcgtcttcg ttgtatgaag accaatcaac attattttgc
    1701  cagtaattat gaacccctag gcttctggcc caagtagatt ttccggttct
    1751  tgttgggccg acgatgtaga ggctctgctt tcttgatctt tcatctgatg
    1801  actggataca gaatccatcc attggaggtc agaaattgca tcctcgaggg
    1851  tataacaggt aggttgaagg agcatgtaag cttcgggact aacctggaag
    1901  atgttaggct ggagccaatc attgattgac tcattacaaa gtaaatcagg
    1951  tgaggagggt ggatgaggat tggtgaactc ttcctgaatc tcaggaaaaa
    2001  gcttatttgc agagtattca aaatactgca attttgtgga ccaatcaaag
    2051  ggaagctctt tctggatcat ggagaggtac tcttcttttg aagtagagtg
    2101  tgaaataatg tctcgcatta tttcatcttt agaaggcttt ttttccttta
    2151  cctctgaatc agattttcct aggaaggggg acttcctagg aatgaaagta
    2201  cctctctcaa acacagccag aggttccttg agaatgtaat ccctcaccct
    2251  gttaactgac ttggcactct gaatatttgg gtgaaaccca tttatatcaa
    2301  agaaccttga gtcagatatc cttaccggct tctctgtctg aagcaatgca
    2351  tgtaaatgca aacttccatc tttatgtgcc tctcgggcac atagaatgta
    2401  cttgggaatc caacgaacga cgagctccca gatcatctga caggcgattt
    2451  caggattttc tggacacttt ggataggtta ggaacgtgtt tgcgttcctg
    2501  tgtgagaact gacggttgga tgaggaggag gccatagccg acgacggagg
    2551  ttgaggctga gggatggcag actgggagct ccaaactcta tagtatacct
    2601  gtgcgccttc gaaatccgcc gctcccttgt cttatagtgg ttgtaaatgg
    2651  gccggaccgg gccggcccag caggaaaaga aggcgcgcac