Sequence of DPV Beet soil-borne virus
Beet soil-borne virus isolate PL segment RNA 1, complete sequence.
ACC No: FJ971717
Dated: 2009-06-18 | Length: 5834 | CRC: -1187614196
ID FJ971717; SV 1; linear; genomic RNA; STD; VRL; 5834 BP.
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AC FJ971717;
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DT 18-JUN-2009 (Rel. 101, Created)
DT 18-JUN-2009 (Rel. 101, Last updated, Version 1)
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DE Beet soil-borne virus isolate PL segment RNA 1, complete sequence.
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KW .
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OS Beet soil-borne virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Pomovirus.
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RN [1]
RP 1-5834
RA Borodynko N., Rymelska N., Hasiow-Jaroszewska B., Pospieszny H.;
RT "Full length genome sequence of Polish Beet soil-borne virus confirm low
RT level of genetic diversity in virus population";
RL Unpublished.
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RN [2]
RP 1-5834
RA Borodynko N., Rymelska N., Hasiow-Jaroszewska B., Pospieszny H.;
RT ;
RL Submitted (28-APR-2009) to the EMBL/GenBank/DDBJ databases.
RL Virology and Bacteriology, Institute of Plant Protection, National Research
RL Institute, Wegorka 20, Poznan 60-318, Poland
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CC GenBank Accession Numbers FJ971717-FJ971719 represent the complete
CC genome of Beet soil-borne virus.
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FH Key Location/Qualifiers
FH
FT source 1. .5834
FT /organism="Beet soil-borne virus"
FT /segment="RNA 1"
FT /host="sugar beet"
FT /isolate="PL"
FT /mol_type="genomic RNA"
FT /country="Poland"
FT /db_xref="taxon:46436"
FT CDS 130. .5466
FT /codon_start=1
FT /transl_except=(pos:3940. .3942,aa:OTHER)
FT /product="204 kDa protein"
FT /note="BSBVs1gp1; putative readthrough protein; putative
FT virus replication"
FT /protein_id="ACS14040.1"
FT /translation="MESTNILTQINRDDIIQAVLTTSASRTQSALHETLCRVIDDNIKN
FT ALKANTKKKTIDVKRNLSEEQVQYLCELYPERKIITSNSERGTHSMAAAMRKIETDLVL
FT SLFPKNSVIYDIGGNWATHAKCNDGRKVHCCCPILDYRDAQRKMTRMLNFHKFISDSSE
FT IPPDIREKAEMIAEDNAIITANVREGDLNSSALNGRWFCQNKFEDCVFDPRDILMGKTA
FT KDNVMVYAMAIHSIYDINVYELATALQRKGIKRMVGTFLFSVDMLLGRKSGELPSVNGF
FT YKLEGEYIKYGFYDDPNCGYRHKFSSLKAYLTKTFVKAANGSVFYLELTDLRGDVMYFT
FT MTDATEARASGIMKDESFKCIPVDAKNKVVFPLFVVDETTDTLMFLERILPKDFVHRAI
FT EYVNRCKENQLTVESIVSYLSSTNNAVIIGGSARKVEEKVDPSLLPMIASTLLVYSEMQ
FT RAKQKTVIQKLRIHVKNTVTIGDLLNHAFHKVFGAVGVGQLALQSFARWLKFFHGSGVI
FT EMNDLFMYVEIEDRIRLWSKKSREHEFFLTFDDLTEKSRLYEEYNEERRRISDKIIKEK
FT GLSSKDLSLEEDKEKTVDEILAWMEKSEDLKASELRSKLIGIRKNRARVDKRKFGEAHQ
FT VNTAVLQRFIEADDDHFSTCALNTPGKWWVDILGEFLGKTLSEVCATNIVFSDIEPNDN
FT TEGFDTVEYADRDDMASDVETSISQCVESNDECVDEDGYSCDGDSKVEHSTLNSNYGAL
FT TPPPREEVKDSEEGVDVTVEDVSTDIIESHCDGRWALMAEDSDFAIDQKRSEALNIMEV
FT RYAKLPSKPDYLESDDFRMRAKKEFIWYLECKLVSDKSAMTDIVRDYVYNMYHNSLCEF
FT PKNSCFLSYEGDDNGNWVWGRKPVRLGHAYAVHFYAADWKTDCRLVSLSWNKDEEGNFV
FT GDKPVISTNSGVYMLCDLTFLMNEMIILKNLQFSLKTRFQKHIPHVTLIDGVPGCGKST
FT HIVKEARLENQYVLTMGREAAAELRERFKTVRGSTEEQLKRVRTVDSFLMNDKDSRAKV
FT LHFDEALMAHAGMVYFCADNLSARTIICQGDSQQIPFINRVESITLEYAKLEITNVVEK
FT RLTYRSPLDVACFLTRKNFYGHFHCYERKSNGRSMSVVGPRDGMTSNYSIPKKKGAQYL
FT TFTQSEKEDIVRYLGKGQWSVNTVHESQGKTYDDVILVRLKPTDNEIYPGGRKSKPYVV
FT VGTTRHRRSLVYYTRAEDILYRDITEMMSVQEGKLHKHLFTENTQXRCGSKYESITVSD
FT RPVSVPDVGAVEDLQVMYDIAFPGNSVIETYFDGYDVATGGLEIDIANIKYYPNKQRRM
FT WQEVRGLTPALRTAMPEKRQSGLIESVLALNKRNMAAPKLQESVNEFEIIENVISKAKT
FT VFFDEKFIDASPMNSVSNCQKWWDKQSVTAQKQMLADTRIISEIDLCTYNFMIKNDVKP
FT KLDLSPQSEYSALQTVVYPDKIVNAIFGPVMKEINERILLALRPHVVYNTRMTAEELDR
FT SVEFLDVREQYDAVEIDFSKFDKSKTSLHIRAVIELYKIFGLDDMLAFLWEKSQCQTTI
FT RDRQNGLIAHILYQQKSGNCDTYGSNTWSAALALLDALPLERAKFMVFGGDDSLVFFPK
FT NMNLADPCGRLASLWNFDCKFFNFQNNMFCGKFLLKIGENYKFAPDPFKLLTKLGRKDI
FT KNDILLSEIFISISDNYRSYHDYRVLEALNVAVVERYKLSQDVLFGLCALKKYLFNFDL
FT FRTLFSYKGKLHCTNVSRNFEW"
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SQ Sequence 5834 BP; 1726 A; 921 C; 1362 G; 1825 T; 0 other;
fj971717 Length: 5834 18-JUN-2009 Type: N Check: 6389 ..
1 gtattatttt ctcaacggtt atttaccaaa gagaagattt ctataccatt
51 aattttgaga agtctgcttt ttagcaataa atcttttcat attattggtt
101 tgtcttttta tttttacgaa aattctacga tggaatctac aaacattctg
151 acgcaaatta atcgtgatga tataattcag gccgtattaa ctacaagtgc
201 gagtaggact cagtctgctt tacatgaaac tttgtgtagg gtgattgatg
251 ataatattaa gaatgctctt aaagctaaca caaaaaagaa aacaattgat
301 gtgaaacgaa acttgtctga agaacaggtt cagtatttat gtgagcttta
351 tcctgaaaga aaaataatta catctaattc tgaacgtggt actcatagta
401 tggctgcggc tatgcgaaaa attgaaacgg atttagtttt gtcactgttt
451 cctaagaata gcgttatata tgatattggt ggtaattggg cgacgcacgc
501 taagtgtaat gatggaagga aagtgcattg ttgctgtccg atattggact
551 atcgtgatgc gcagaggaag atgacgcgga tgttaaactt tcataagttt
601 atcagcgatt cttctgagat acctcctgat atcagagaaa aagcggagat
651 gatagccgag gacaacgcca ttataactgc aaatgtgcgg gaaggtgatc
701 tgaattcttc tgctttgaac ggacgttggt tttgccaaaa caagtttgaa
751 gactgtgttt ttgatccgcg tgacattttg atgggtaaga ctgctaaaga
801 taatgtaatg gtttatgcca tggcaattca cagtatttat gatataaatg
851 tttatgaatt ggctacggcg ttacagcgaa aaggaataaa gcggatggta
901 ggtacttttc tgttttctgt ggacatgttg ctcggaagaa aaagtggtga
951 attgccatct gttaacgggt tttataagtt ggaaggtgaa tatataaaat
1001 acgggtttta cgacgatcca aattgcggtt acagacataa gttttcttcg
1051 cttaaggctt acttaacaaa gacttttgtt aaagcagcga atggttccgt
1101 gttttacctg gagttgactg atttaagggg tgacgtaatg tattttacta
1151 tgacagatgc tacagaggcg cgggcttccg gtattatgaa agatgagtcg
1201 ttcaagtgca ttccagtgga cgcaaaaaac aaggtagttt ttcctttgtt
1251 tgttgtagat gaaactactg acacacttat gtttctcgaa cgcatattgc
1301 caaaagattt cgtgcatcgc gctattgagt atgtcaatcg ttgcaaagag
1351 aatcagttaa cggttgaaag tattgttagt tatttatcgt ctactaataa
1401 tgccgtgata attggtgggt ctgcgagaaa agtggaagag aaggtggatc
1451 cttctttgct accgatgatc gcctccactt tgttagttta cagtgaaatg
1501 cagagagcta aacagaagac tgttattcaa aagctgagaa ttcatgtgaa
1551 gaatacagtt actatcggtg atttgttgaa ccacgctttc cataaggtgt
1601 tcggcgccgt tggtgtcggt cagttggcgc tgcagagctt tgctagatgg
1651 ttaaagtttt ttcatggctc aggggttatc gagatgaatg acctttttat
1701 gtacgtggag attgaagacc gtattaggtt atggtctaag aaatctcgag
1751 agcacgaatt cttcctaacc tttgatgatc tgacagaaaa aagtcgtttg
1801 tacgaagagt acaacgaaga gagacgtagg atttctgaca agatcattaa
1851 ggaaaaaggt ttgagttcta aagacctttc tttggaagaa gataaggaaa
1901 agacggtaga tgaaattctg gcctggatgg agaaatctga agatttgaag
1951 gcttcggaat tgcgttctaa gttaataggg attcgaaaga atcgtgcacg
2001 tgttgataaa cgaaagtttg gtgaggcgca tcaggtaaat acggctgtat
2051 tgcagaggtt tatcgaagcg gatgacgatc acttttccac gtgtgcttta
2101 aatactccag gcaagtggtg ggttgatatc ctgggtgaat ttttaggaaa
2151 gacattatca gaggtttgtg ctactaatat tgttttttct gatatagaac
2201 ccaatgataa cactgaaggt tttgatactg ttgaatatgc tgatagagac
2251 gatatggcta gcgatgtcga aacgtcgatt agtcagtgcg tcgagtccaa
2301 cgatgagtgt gtagacgaag atggttacag ttgcgacggt gattccaaag
2351 ttgagcattc tactttaaac agtaattatg gtgcgttgac gccacctcct
2401 agagaagagg taaaagattc agaggagggc gttgatgtga cagttgaaga
2451 cgtatctacg gatataattg agtcgcattg tgatggaaga tgggcattga
2501 tggcggaaga ttctgatttc gccattgacc agaagcgatc cgaggcgcta
2551 aatattatgg aagttagata tgctaaatta ccgtctaaac cagattactt
2601 agaaagtgat gattttagaa tgcgggcaaa gaaagagttt atctggtact
2651 tagaatgtaa gttggtttca gataagtctg caatgactga tattgtgcga
2701 gattatgttt ataacatgta ccataacagt ctttgcgagt ttccgaaaaa
2751 ttcttgcttt ctaagttacg aaggtgatga caacggtaat tgggtttggg
2801 gcaggaaacc ggttaggttg ggccacgctt acgctgttca cttttatgcc
2851 gctgattgga agactgactg tcgacttgta agtttgtcat ggaacaaaga
2901 cgaggaagga aatttcgttg gcgataagcc cgttatttct actaattccg
2951 gagtttacat gctatgcgat ttgacatttt taatgaatga aatgatcatt
3001 ttgaaaaatt tgcagttttc gttgaagacc aggtttcaga agcatattcc
3051 acacgttaca cttattgatg gtgtacctgg gtgtggtaaa tcaactcata
3101 ttgttaaaga agctagactg gaaaaccagt acgtactcac tatgggtcga
3151 gaagcagctg cagagttgcg agagcgattt aaaactgtac gcggttcgac
3201 cgaagaacag ttgaaaagag tgcggactgt tgattctttt ttgatgaacg
3251 ataaggactc tagggccaaa gttttgcatt tcgacgaggc attgatggcg
3301 catgctggta tggtttactt ttgtgcagat aatttgtctg ctcggacaat
3351 tatttgtcaa ggtgattctc agcagatacc atttattaac cgcgttgaat
3401 ccataacttt ggaatacgcc aagttagaaa taactaacgt ggtggagaaa
3451 agacttacct atcgttcccc tttggacgtt gcctgttttc tgacaaggaa
3501 aaatttttat gggcacttcc actgttatga gcgcaaatcc aacggacgtt
3551 ctatgagcgt tgttggtccc cgagatggca tgacgtctaa ctacagtatt
3601 cctaagaaga aaggtgcaca atacctcact tttactcaaa gtgagaagga
3651 agacatagtc cgttacctgg gtaagggaca gtggtctgta aacactgtac
3701 atgaaagtca aggaaaaact tacgatgatg ttatattagt taggttaaag
3751 cctactgata atgaaattta tcctggtggg cggaaatcaa aaccttacgt
3801 cgtagttggt actacgcggc atagacgcag tttagtgtac tacacacgtg
3851 ctgaggacat tctgtacaga gatataactg aaatgatgag tgtgcaagaa
3901 ggaaaattgc acaaacattt gttcacggag aatactcaat aacggtgtgg
3951 gtcgaagtac gagtcgataa ccgtttccga tcgtccggta agtgttccag
4001 acgttggagc tgttgaagat ttgcaggtta tgtatgacat tgcttttcct
4051 ggcaattcgg ttattgagac gtatttcgac gggtacgatg ttgctacggg
4101 aggtttagaa atagatattg ctaatataaa atattatccc aacaagcaaa
4151 ggcgaatgtg gcaagaagtt cgcggactta cacctgcttt gcgaactgct
4201 atgccggaga aaaggcagag cggtttgata gagagcgttc tggcgcttaa
4251 taagagaaat atggctgctc ctaagttaca ggaatcggtt aacgaattcg
4301 agattattga gaatgtcatt tctaaggcta aaactgtttt cttcgatgag
4351 aaatttattg atgcatctcc gatgaactcc gtatcaaatt gtcaaaaatg
4401 gtgggataaa cagtcagtga ccgcgcagaa acagatgttg gcggatacta
4451 gaattatatc cgaaattgac ttgtgcacat ataacttcat gataaaaaat
4501 gatgttaagc ctaagttgga tttgtcgcca cagtcggagt attctgcatt
4551 acaaacagtt gtctatccgg ataaaattgt taatgctatt tttggtcctg
4601 tgatgaagga gataaacgaa agaatattgt tagcgttgcg gcctcatgtt
4651 gtgtataaca caaggatgac agccgaagaa ctagataggt ccgttgaatt
4701 tctcgacgtt cgcgaacaat acgatgctgt tgagattgat ttttctaaat
4751 ttgataaatc aaaaacttct ttacacatta gggcagtgat agaattatac
4801 aagatttttg gccttgacga tatgttagct ttcttatggg agaagtcaca
4851 atgtcagact acaattcgtg atcgtcagaa tggactgatt gcgcatatac
4901 tttatcaaca aaaatctggt aactgtgata catatggttc taatacttgg
4951 tcggctgctc ttgctctttt ggatgcgtta ccacttgagc gagctaagtt
5001 catggtattt ggcggtgatg attctcttgt gtttttccca aaaaatatga
5051 atttggctga cccttgtggt aggttggctt ctctttggaa tttcgattgt
5101 aaatttttca actttcaaaa caacatgttt tgtggtaagt ttcttttaaa
5151 aattggagaa aattataagt ttgcgccgga tccttttaaa ttacttacaa
5201 aacttggtag gaaagatatc aaaaacgata ttttgcttag tgaaattttt
5251 atttctataa gcgataatta ccgttcttat catgactaca gagttttaga
5301 agctttaaac gtggcggttg tcgaacgtta taaattatct caagacgttt
5351 tgtttggttt gtgtgcttta aaaaaatact tgtttaactt tgatttattc
5401 cgcacacttt tctcttataa aggcaaatta cactgcacta acgtgagtag
5451 aaattttgaa tggtaaaatt tctttggttc tccgttttgt gagtttaaga
5501 tcattatttt gtgtaatttg gtgtgaagag atacagtcta tttgcacttg
5551 taaatgatta tttgagctga tcactcaacg tggatttcac gatagaaatc
5601 ggtgtttttc attccacata aatcgacatg tactacggta gcgcgaacct
5651 tatcgcggag tgttttgaag tccacttaaa tagaacttct ttccatggtc
5701 tctttcgcta ctgaattaat tagaaaaact tcagtattcg atttatgcag
5751 atgagagtag tatctctcga tcatcaagac acgatgattc tgtggggtgc
5801 aaatcccccc ctttacttga gggaaatcaa gccc