Sequence of DPV Tomato yellow leaf curl Mali virus
Tomato yellow leaf curl Mali virus complete genome, isolate Cameroon:Gashiga:Pepper2:2007
ACC No: FM212661
Dated: 2009-01-10 | Length: 2793 | CRC: 375764834
ID FM212661; SV 1; circular; genomic DNA; STD; VRL; 2793 BP.
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AC FM212661;
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DT 10-JAN-2009 (Rel. 98, Created)
DT 10-JAN-2009 (Rel. 98, Last updated, Version 1)
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DE Tomato yellow leaf curl Mali virus complete genome, isolate
DE Cameroon:Gashiga:Pepper2:2007
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KW complete genome.
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OS Tomato yellow leaf curl Mali virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2793
RA Lett J.M.;
RT ;
RL Submitted (01-OCT-2008) to the EMBL/GenBank/DDBJ databases.
RL Lett J.M., Bios, CIRAD-UMR PVBMT-3P, 7 Chemin de l'IRAT / Ligne Paradis,
RL 97410 Saint Pierre / Ile de La Reunion, FRANCE.
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RN [2]
RA Lett J.M., Lefeuvre P., Couston L., Hoareau M., Thierry M., Reynaud B.,
RA Martin D.P., Varsani A.;
RT "Complete genomic sequences of Tomato yellow leaf curl Mali virus isolates
RT infecting tomato and pepper from the North Province of Cameroon";
RL Unpublished.
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FH Key Location/Qualifiers
FH
FT source 1. .2793
FT /organism="Tomato yellow leaf curl Mali virus"
FT /strain="Mali"
FT /isolate="Cameroon:Gashiga:Pepper2:2007"
FT /mol_type="genomic DNA"
FT /country="Cameroon:North Province"
FT /lat_lon="5.24 N 13.69 E"
FT /isolation_source="Capsicum annum (Sweet pepper)"
FT /collected_by="Laurent Couston"
FT /collection_date="Feb-2007"
FT /db_xref="taxon:260377"
FT CDS 146. .496
FT /gene="V2"
FT /product="Movement protein (MP)"
FT /protein_id="CAR82100.1"
FT /translation="MWDPLLNEFPESVHGFRCMLAIKYLQAVEETYEPNTLGHDLIRDL
FT ISVVRARDYVEATRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQATVMDVQAHV
FT PKAQNIQNVSKP"
FT CDS 306. .1082
FT /gene="V1"
FT /product="Coat protein (CP)"
FT /protein_id="CAR82101.1"
FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYSSRAAAPIVQGINKRRSW
FT TYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSYEQRDDIKHTGIVRCVSDVTRGSGITH
FT RVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGNSPMDFGQVFNMFDN
FT EPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFFRINSHVTYNHQEAAKYE
FT NHTENALLLYMACTHASNPVYATMKIRIYFYDSISN"
FT CDS complement(1079. .1483)
FT /gene="C3"
FT /product="replication enhancer protein (REn)"
FT /protein_id="CAR82102.1"
FT /translation="MDLRTGELITAHQAENGVFIWEINNPLYFKITDHSQRPFNMDHDI
FT ISIQIRFNHNIRKVLGIHKCFLNFRIWTTLRPQTGRFLRVFRYQVLKYLDSLGVISINN
FT VIRAVDNVLYDVFDKTIDVTETHDIKYNFY"
FT CDS complement(1224. .1631)
FT /gene="C2"
FT /product="transcription activator protein (TrAP)"
FT /protein_id="CAR82103.1"
FT /translation="MQPSSPSTSHCSQVPIKVQHKIAKKKPIRRKRVDLDCGCSYYLHI
FT NCINYGFTHRGTHHCSSSREWRFYLGDKQSPLFQDNRPQPEAIQHGSRHHFNTDPVQSQ
FT HQEGTGDSQMFSQLQNLDDLTASDWSFLKSI"
FT CDS complement(1540. .2619)
FT /gene="C1"
FT /product="replication associated protein (Rep)"
FT /protein_id="CAR82104.1"
FT /translation="MAPPKRFKINAKNYFLTYPQCSLSLSEALSQLQTLETPVNKLYIK
FT ICRELHENGEPHLHALVQFEGKYQCTNNRFFDLVSPSRSTHFHPNIQGAKSSSDVKSYI
FT DKDGDTIDWGEFQIDGRSARGGQHSANDAYATAINAGSKSEALRVIRELAPKDYVLQFH
FT NLNSNLDRIFQEPPAPYISPFLSSSFNQVPEELEIWVSENVMSSAARPWRPDSIVIEGD
FT SRTGKTMWARSLGPHNYLCGHLDLSPKIFSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYGEYLDEEKNLSLKNWALKNATFITLYKPL
FT FSSTNQGPTQDSQEETNQA"
FT CDS complement(2160. .2462)
FT /gene="C4"
FT /product="C4 protein"
FT /protein_id="CAR82105.1"
FT /translation="MGNLICMPLFSSKESTSAQITDSSTWYPQVDQHISIQTFRELNHH
FT LMSNPTSIRMETPSIGESFRSMEDLQGGDNILQTMLTQQLLTQEVSRKLLESLGN"
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SQ Sequence 2793 BP; 792 A; 536 C; 596 G; 869 T; 0 other;
fm212661 Length: 2793 10-JAN-2009 Type: N Check: 3455 ..
1 accggatggc cgcgcccttc ctttatgtgg tccccacgtg tgtcctatag
51 acgtcactat caaccaatca aattgcatcc tcaaacgtta aataatcgtt
101 catttgtctt tatatacttg gtctccaagt ttattgtcat ataatatgtg
151 ggatccactc ctaaatgaat ttcctgaatc tgttcacgga tttcgttgta
201 tgttagctat taaatatttg caggccgttg aagaaacgta tgagcccaat
251 actttgggcc acgatttaat tagggatctt atatctgttg taagggcccg
301 tgactatgtc gaagcgaccc ggcgatataa tcatttccac gcccgtctcg
351 aaggttcgcc gaaggctgaa cttcgacagc ccatacagca gccgtgctgc
401 tgcccccatt gtccaaggca taaacaagcg acggtcatgg acgtacaggc
451 ccatgtaccg aaagcccaga atatacagaa tgtatcgaag ccctgatgtt
501 ccccgtggat gtgaaggccc atgtaaggtc caatcgtatg agcaacggga
551 tgacattaag catactggta ttgttcgttg tgttagcgat gttactcgtg
601 gttccggtat tacccacaga gtgggtaaga ggttctgcgt taagtccata
651 tactttttag gtaaagtctg gatggatgaa aatatcaaaa agcagaacca
701 tactaatcaa gtcatgttct tcttggtccg tgatagaagg ccctatggaa
751 acagcccaat ggattttgga caggttttta atatgttcga taatgagccc
801 agtaccgcaa cagtgaagaa tgatctcagg gataggtttc aagtgatgag
851 gaaatttcat gctaccgtga ttggtggtcc gtctggtatg aaggaacagg
901 ctttagttaa gagattcttt agaattaaca gtcatgtaac ttataatcat
951 caggaggcag ctaagtacga gaatcatact gaaaacgcct tgttattgta
1001 tatggcatgt acgcatgcct ctaacccagt gtatgcaact atgaaaatac
1051 gcatatattt ctatgattca atatcaaatt aataaaaatt atattttata
1101 tcatgggttt ctgttacatc tattgtctta tcaaatacat cgtataatac
1151 attatcaact gctctaatta cattattaat ggaaattaca cctagactat
1201 ctaaatactt aagaacttga tatctaaata ctcttaagaa acgaccagtc
1251 tgaggccgta aggtcgtcca gattctgaag ttgagaaaac atttgtgaat
1301 ccccagtacc ttcctgatgt tgtgattgaa ccggatctgt attgaaatga
1351 tgtcgtgatc catgttgaat ggcctctggc tgtggtctgt tatcttgaaa
1401 taaaggggat tgtttatctc ccagataaaa acgccattct ctgcttgatg
1451 agcagtgatg agttcccctg tgcgtaaatc catagttgat gcagttgatg
1501 tggagatagt atgagcagcc acagtctagg tctacacgct tacgcctgat
1551 tggtttcttc ttggctatct tgtgttggac cttgattggt acttgagaac
1601 aatggcttgt agagggtgat gaaggttgca ttcttgagag cccaattttt
1651 caaggataag tttttttctt catctagata ttctccatat gaagaagtag
1701 gtcctggatt gcagaggaag atagtgggaa ttccaccttt aatttgaatg
1751 ggtttcccgt attttgtgtt gctctgccag tccctttggg cccccatgaa
1801 ttctttaaag tgctttaaat aatgcgggtc tacgtcatca atgacgttgt
1851 accacgcatc atttgaaaat attttagggc taagatcgag atgtccacac
1901 aaataattgt gtggacctaa cgatcgtgcc cacattgttt ttccggtacg
1951 actatctccc tcgattacaa tactatcagg tctccatggc cgcgcagcgg
2001 aagacatgac gttctcggac acccatattt caagttcctc tggaacttga
2051 ttaaaagaag aagataaaaa aggagaaata taaggagctg gaggctcttg
2101 aaaaattcta tctaaattac tatttaaatt atgaaattgt aaaacgtaat
2151 ctttgggggc tagttcccta atgactctaa gagcttccga cttacttcct
2201 gcgttaatag ctgttgcgta agcatcgttt gcagaatgtt gtccccccct
2251 tgcagatctt ccatcgatct gaaactctcc ccaatcgatg gtgtctccat
2301 ccttatcgat gtaggatttg acatcagatg atgatttagc tccctgaatg
2351 tttggatgga aatgtgttga tctacttggg gataccaggt cgaagaatct
2401 gttatttgtg cactggtact ttccttcgaa ctgaacaagg gcatgcagat
2451 gaggttcccc attttcgtga agctctctgc aaattttaat gtataattta
2501 tttacaggag tttcgagggt ttgtagttgg gaaagtgctt cagataagga
2551 aagagaacat tggggataag taaggaaata atttttggca tttattttaa
2601 aacgctttgg aggagccatt tggtcaatgt accccgattg acttggattt
2651 catttatccc ttcaatcggt gtaatggggt acaatatata cttgtactcc
2701 aaatggcaat ttggtaatta tgcaaaagta aattgcaatt caaaattcaa
2751 aaatgaaaaa tcaaatcatt aaagcggcca tccgtataat att