Sequence of DPV Pepper yellow vein Mali virus
Pepper yellow vein Mali virus complete genome, isolate Burkina Faso-Bazega-sweet pepper-2007
ACC No: FM876847
Dated: 2011-03-04 | Length: 2786 | CRC: -1768465731
ID FM876847; SV 1; circular; genomic DNA; STD; VRL; 2786 BP. XX AC FM876847; XX DT 20-JAN-2009 (Rel. 99, Created) DT 04-MAR-2011 (Rel. 108, Last updated, Version 2) XX DE Pepper yellow vein Mali virus complete genome, isolate Burkina DE Faso-Bazega-sweet pepper-2007 XX KW complete genome. XX OS Pepper yellow vein Mali virus OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus; OC unclassified Begomovirus. XX RN [1] RP 1-2786 RA Tiendrebeogo F.; RT ; RL Submitted (19-NOV-2008) to the EMBL/GenBank/DDBJ databases. RL Tiendrebeogo F., Biochimie-Microbiologie, CRSBAN/UFR/SVT Universite de RL Ouagadougou, 03 BP 7131 Ouagadougou 03, BURKINA FASO. XX RN [2] RA Tiendrebeogo F., Lefeuvre P., Hoareau M., Traore V.S., Barro N., RA Perefarres F., Reynaud B., Traore A.S., Konate G., Lett J.M., Traore O.; RT "Molecular and biological characterization of Pepper yellow vein Mali virus RT (PepYVMV) isolates associated with pepper yellow vein disease in Burkina RT Faso"; RL Arch. Virol. 156(3):483-487(2011). XX FH Key Location/Qualifiers FH FT source 1. .2786 FT /organism="Pepper yellow vein Mali virus" FT /host="Capsicum annuum var. annuum" FT /strain="Mali" FT /isolate="Burkina Faso-Bazega-sweet pepper-2007" FT /mol_type="genomic DNA" FT /country="Burkina Faso" FT /lat_lon="11.58 N 1.26 W" FT /collected_by="Fidele Tiendrebeogo" FT /collection_date="Nov-2007" FT /db_xref="taxon:260378" FT CDS 139. .489 FT /gene="V2" FT /product="movement protein (MP)" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:B8ZWK8" FT /protein_id="CAS97465.1" FT /translation="MWDPLLNEFPESVHGFRCMLAIKFLQAVEETYEPNTLGHDLIRDL FT ISVIRARDYVEATRRYNHFHARLEGSSKAELRQPIHQPCCCPHCPRHKQASIMDLPAHV FT SKAQDVQNVQKP" FT CDS 299. .1075 FT /gene="CP" FT /product="coat protein (CP)" FT /db_xref="GOA:B8ZWK9" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:B8ZWK9" FT /protein_id="CAS97466.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYTSRAAVPIAQGINRRRSW FT TYRPMYRKPRMYRMFRSPDVPRGCEGPCKVQSYEQRDDVKHTGIVRCVSDVTRGPGITH FT RVGKRFCIKSMYILGKIWMDENIKKQNHTNQVMFFLVRDRRPYGTSPQDFGQVFNMFDN FT EPSTATVKNDLRDRYQVLRKFHATVVGGPSGMKEQALVKRFFRVNTHVVYNHQEAAKYE FT NHTENALLLYMACTHASNPVYATLKIRIYFYDAVTN" FT CDS complement(1072. .1476) FT /gene="C3" FT /product="replication enhancer protein (REn)" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:B8ZWL0" FT /protein_id="CAS97467.1" FT /translation="MDSRTGEHITALQAKNGVFIWEINNPLYFTITNHEIRPFNMNQDI FT LTLQIRFNHNLRRALGIHKCFLNFKVWTTLRPQTGLFLRVFRFQVWKYLNNLGVISINN FT VIRAVDHVLYVVLVNTISVMETHEIKFNLY" FT CDS complement(1217. .1624) FT /gene="C2" FT /product="transcription activator protein (TrAP)" FT /db_xref="GOA:B8ZWL1" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:B8ZWL1" FT /protein_id="CAS97468.1" FT /translation="MQPSSPSTGHSTQVPIKVIHRRAKTKAIRRKRIDLDCGCSYYLHI FT DCINHGFTHRGTHHCSSSKEWRFYMGDKQSPLFHDNKPRDQAIQHEPRHPHTPNTIQSQ FT PQEGTGDSQMFSQLQGLDDLTASDWSFLKGI" FT CDS complement(1548. .2612) FT /gene="C1" FT /product="replication associated protein (Rep)" FT /db_xref="GOA:B8ZWL2" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:B8ZWL2" FT /protein_id="CAS97469.1" FT /translation="MAPPKRFKISSKNYFLTFPKCSLTKEEALEQLLNLSTPTNTKFIK FT VCRELHTNGEPHLHVLMQFEGKYQCTNNRFFDLVSPTRSTHFHPNIQGAKSSSDVKSYI FT DKDGDTLEWGVFQVDGRSARGGCRNANDAAAEALNAGSAEAAMAIIREKLPKEFIFQYH FT NLKPNLDRIFQEPPAPYVSPFLSSSFTQVPEELEEWVSENVMGAAARPWRPNSIVVEGD FT SRTGKTVWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHWKEFFGAQRDW FT QSNTKYGKPIQIKGGIPSIFLCNPGPTSSYKEFLEEAKNYALKNWTLKNATFVTLDRPL FT YSSTNQGHPPQSQD" FT CDS complement(2198. .2455) FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:B8ZWL3" FT /protein_id="CAS97470.1" FT /translation="MGNLISTCLCSSRGNTSARITDSSTWYPQPGQHISIRTFRELNQA FT PTSSPTSTRTETPLNGGYSRSTEEVLGEAVEMLTTLQQRP" XX SQ Sequence 2786 BP; 716 A; 577 C; 655 G; 838 T; 0 other; fm876847 Length: 2786 04-MAR-2011 Type: N Check: 1817 .. 1 accggatggc cgcgcccccg aaaaagatat gggccccacg cactactatg 51 tgtcgaccaa tcatatcgca gcctgaaagg ctagatattt gttttttgtc 101 tttatatact tgggcaccaa gtatgggcct tgtccatcat gtgggatcca 151 cttttgaacg agtttcccga atccgttcac ggatttcgtt gtatgctcgc 201 cattaaattt ttgcaggccg tggaggaaac ttacgagccc aatactttgg 251 gccacgattt aattagggat cttattagtg ttattagggc tcgagactat 301 gtcgaagcga cccggcgata taatcatttc cacgcccgtc tcgaaggttc 351 gtcgaaggct gaacttcgac agcccataca ccagccgtgc tgctgtcccc 401 attgcccaag gcataaacag gcgtcgatca tggacctacc ggcccatgta 451 tcgaaagccc aggatgtaca gaatgttcag aagccctgat gtccctcgtg 501 gttgtgaggg tccgtgtaag gttcagtcgt acgaacagag ggatgatgtt 551 aagcacactg gtattgttcg ctgcgttagt gatgtcacac gtggcccggg 601 tattactcat cgtgtaggaa agagattttg tattaagtct atgtatattc 651 tgggtaagat ctggatggat gaaaatatca agaagcagaa tcacaccaac 701 caggtcatgt tttttttagt tcgtgataga aggccctatg gaaccagccc 751 acaggatttt gggcaggttt ttaacatgtt cgataatgag cccagtactg 801 ctacggtgaa gaatgatttg cgtgatcgtt atcaagtcct caggaaattc 851 catgctacgg tagttggtgg accctctggg atgaaagagc aggctttagt 901 caagaggttt tttagggtta acacgcacgt cgtgtacaat catcaggaag 951 cagctaaata tgagaatcat actgagaatg ctttgttgtt gtatatggca 1001 tgtactcatg cctctaaccc tgtgtatgct acgcttaaga tacgcatcta 1051 tttttatgat gccgttacga attaataaag attgaatttt atttcatgag 1101 tttccataac ggaaatcgta tttacaagta caacatataa cacatgatca 1151 actgctctaa ttacattatt gatagaaatt acacctaaat tattcaaata 1201 cttccaaact tggaacctaa atacccttaa gaaaagacca gtctgaggcc 1251 gtaaggtcgt ccagaccttg aagttgagaa aacatttgtg aatccccagt 1301 gccctcctga ggttgtgatt gaatcgtatt tggagtgtga ggatgtcttg 1351 gttcatgttg aatggcctga tctcgtggtt tgttatcgtg aaatagaggg 1401 gattgtttat ctcccatata aaaacgccat tctttgcttg aagagcagtg 1451 atgtgttccc ctgtgcgtga atccatggtt gatgcagtcg atgtggaggt 1501 agtatgaaca gccgcagtcg aggtctattc gcttacggcg aatggcttta 1551 gtcttggctc tgcggtggat gaccttgatt ggtacttgag tagagtggcc 1601 tgtcgagggt gacgaaggtt gcattcttta gtgtccagtt cttgagtgcg 1651 taattcttcg cctcttctag gaattcttta tatgaggatg ttgggcctgg 1701 attgcagagg aagatagagg gaattccgcc tttaatttga attggcttcc 1751 cgtactttgt gttgctttgc cagtccctct gggccccaaa gaattctttc 1801 cagtgcttta gatagtgcgg gtcgacgtca tcaatgacgt tataccaagc 1851 atcattagaa taaacctttg gacttaagtc taaatgacca cataagtaat 1901 tatgtggccc taatgaccta gcccaaacag ttttgccggt acgactatcg 1951 ccctctacta caatactatt aggcctccac ggccgcgcag cggcacccat 2001 gacattctca gacacccact cttcaagttc ttctggaact tgagtaaaag 2051 aagacgaaag aaaaggagaa acataaggag ctggaggctc ttgaaaaatc 2101 ctatctaaat taggttttaa attatgatat tgaaaaataa attctttagg 2151 gagtttctcc ctaataatag ccatagcggc ttcagcggaa cctgcattta 2201 aggcctctgc tgcagcgtcg ttagcatttc gacagcctcc cctagcactt 2251 cttccgtcga cctggaatac cccccattca agggtgtctc cgtccttgtc 2301 gatgtaggac ttgacgtcgg agcttgattt agctccctga atgttcggat 2351 ggaaatgtgt tgacctggtt ggggatacca ggtcgaagaa tctgttattc 2401 gtgcactggt atttcccctc gaactgcata agcacgtgga gatgaggttc 2451 cccatttgtg tgcaactctc tgcagacttt gatgaatttt gtatttgttg 2501 gggttgacag atttagaagt tgctctaacg cttcctcttt agttagggag 2551 cattttggga aagtgaggaa ataatttttg gaacttattt taaaacgctt 2601 tggaggagcc atttggtcaa tgtaccccaa ttgaccgctc ttggcatttg 2651 gtgcctacaa ttggggtaat ggggtacaat atatactcgt acccctaatg 2701 gcattatggt aatttggtaa agctcttttc actttaattc gaaatttgaa 2751 ttccgaattt tttttagcgg ccatccgtat aatatt