Sequence of DPV Pepper yellow vein Mali virus

Pepper yellow vein Mali virus complete genome, isolate Burkina Faso-Bazega-sweet pepper-2007

ACC No: FM876847

Dated: 2011-03-04 | Length: 2786 | CRC: -1768465731

                
ID   FM876847; SV 1; circular; genomic DNA; STD; VRL; 2786 BP.
XX
AC   FM876847;
XX
DT   20-JAN-2009 (Rel. 99, Created)
DT   04-MAR-2011 (Rel. 108, Last updated, Version 2)
XX
DE   Pepper yellow vein Mali virus complete genome, isolate Burkina
DE   Faso-Bazega-sweet pepper-2007
XX
KW   complete genome.
XX
OS   Pepper yellow vein Mali virus
OC   Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC   unclassified Begomovirus.
XX
RN   [1]
RP   1-2786
RA   Tiendrebeogo F.;
RT   ;
RL   Submitted (19-NOV-2008) to the EMBL/GenBank/DDBJ databases.
RL   Tiendrebeogo F., Biochimie-Microbiologie, CRSBAN/UFR/SVT Universite de
RL   Ouagadougou, 03 BP 7131 Ouagadougou 03, BURKINA FASO.
XX
RN   [2]
RA   Tiendrebeogo F., Lefeuvre P., Hoareau M., Traore V.S., Barro N.,
RA   Perefarres F., Reynaud B., Traore A.S., Konate G., Lett J.M., Traore O.;
RT   "Molecular and biological characterization of Pepper yellow vein Mali virus
RT   (PepYVMV) isolates associated with pepper yellow vein disease in Burkina
RT   Faso";
RL   Arch. Virol. 156(3):483-487(2011).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .2786
FT                   /organism="Pepper yellow vein Mali virus"
FT                   /host="Capsicum annuum var. annuum"
FT                   /strain="Mali"
FT                   /isolate="Burkina Faso-Bazega-sweet pepper-2007"
FT                   /mol_type="genomic DNA"
FT                   /country="Burkina Faso"
FT                   /lat_lon="11.58 N 1.26 W"
FT                   /collected_by="Fidele Tiendrebeogo"
FT                   /collection_date="Nov-2007"
FT                   /db_xref="taxon:260378"
FT   CDS             139. .489
FT                   /gene="V2"
FT                   /product="movement protein (MP)"
FT                   /db_xref="InterPro:IPR002511"
FT                   /db_xref="InterPro:IPR005159"
FT                   /db_xref="UniProtKB/TrEMBL:B8ZWK8"
FT                   /protein_id="CAS97465.1"
FT                   /translation="MWDPLLNEFPESVHGFRCMLAIKFLQAVEETYEPNTLGHDLIRDL
FT                   ISVIRARDYVEATRRYNHFHARLEGSSKAELRQPIHQPCCCPHCPRHKQASIMDLPAHV
FT                   SKAQDVQNVQKP"
FT   CDS             299. .1075
FT                   /gene="CP"
FT                   /product="coat protein (CP)"
FT                   /db_xref="GOA:B8ZWK9"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR000650"
FT                   /db_xref="UniProtKB/TrEMBL:B8ZWK9"
FT                   /protein_id="CAS97466.1"
FT                   /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYTSRAAVPIAQGINRRRSW
FT                   TYRPMYRKPRMYRMFRSPDVPRGCEGPCKVQSYEQRDDVKHTGIVRCVSDVTRGPGITH
FT                   RVGKRFCIKSMYILGKIWMDENIKKQNHTNQVMFFLVRDRRPYGTSPQDFGQVFNMFDN
FT                   EPSTATVKNDLRDRYQVLRKFHATVVGGPSGMKEQALVKRFFRVNTHVVYNHQEAAKYE
FT                   NHTENALLLYMACTHASNPVYATLKIRIYFYDAVTN"
FT   CDS             complement(1072. .1476)
FT                   /gene="C3"
FT                   /product="replication enhancer protein (REn)"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProtKB/TrEMBL:B8ZWL0"
FT                   /protein_id="CAS97467.1"
FT                   /translation="MDSRTGEHITALQAKNGVFIWEINNPLYFTITNHEIRPFNMNQDI
FT                   LTLQIRFNHNLRRALGIHKCFLNFKVWTTLRPQTGLFLRVFRFQVWKYLNNLGVISINN
FT                   VIRAVDHVLYVVLVNTISVMETHEIKFNLY"
FT   CDS             complement(1217. .1624)
FT                   /gene="C2"
FT                   /product="transcription activator protein (TrAP)"
FT                   /db_xref="GOA:B8ZWL1"
FT                   /db_xref="InterPro:IPR000942"
FT                   /db_xref="UniProtKB/TrEMBL:B8ZWL1"
FT                   /protein_id="CAS97468.1"
FT                   /translation="MQPSSPSTGHSTQVPIKVIHRRAKTKAIRRKRIDLDCGCSYYLHI
FT                   DCINHGFTHRGTHHCSSSKEWRFYMGDKQSPLFHDNKPRDQAIQHEPRHPHTPNTIQSQ
FT                   PQEGTGDSQMFSQLQGLDDLTASDWSFLKGI"
FT   CDS             complement(1548. .2612)
FT                   /gene="C1"
FT                   /product="replication associated protein (Rep)"
FT                   /db_xref="GOA:B8ZWL2"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:B8ZWL2"
FT                   /protein_id="CAS97469.1"
FT                   /translation="MAPPKRFKISSKNYFLTFPKCSLTKEEALEQLLNLSTPTNTKFIK
FT                   VCRELHTNGEPHLHVLMQFEGKYQCTNNRFFDLVSPTRSTHFHPNIQGAKSSSDVKSYI
FT                   DKDGDTLEWGVFQVDGRSARGGCRNANDAAAEALNAGSAEAAMAIIREKLPKEFIFQYH
FT                   NLKPNLDRIFQEPPAPYVSPFLSSSFTQVPEELEEWVSENVMGAAARPWRPNSIVVEGD
FT                   SRTGKTVWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHWKEFFGAQRDW
FT                   QSNTKYGKPIQIKGGIPSIFLCNPGPTSSYKEFLEEAKNYALKNWTLKNATFVTLDRPL
FT                   YSSTNQGHPPQSQD"
FT   CDS             complement(2198. .2455)
FT                   /gene="C4"
FT                   /product="C4 protein"
FT                   /db_xref="InterPro:IPR002488"
FT                   /db_xref="UniProtKB/TrEMBL:B8ZWL3"
FT                   /protein_id="CAS97470.1"
FT                   /translation="MGNLISTCLCSSRGNTSARITDSSTWYPQPGQHISIRTFRELNQA
FT                   PTSSPTSTRTETPLNGGYSRSTEEVLGEAVEMLTTLQQRP"
XX
SQ   Sequence 2786 BP; 716 A; 577 C; 655 G; 838 T; 0 other;

fm876847 Length: 2786  04-MAR-2011  Type: N  Check: 1817  ..

       1  accggatggc cgcgcccccg aaaaagatat gggccccacg cactactatg
      51  tgtcgaccaa tcatatcgca gcctgaaagg ctagatattt gttttttgtc
     101  tttatatact tgggcaccaa gtatgggcct tgtccatcat gtgggatcca
     151  cttttgaacg agtttcccga atccgttcac ggatttcgtt gtatgctcgc
     201  cattaaattt ttgcaggccg tggaggaaac ttacgagccc aatactttgg
     251  gccacgattt aattagggat cttattagtg ttattagggc tcgagactat
     301  gtcgaagcga cccggcgata taatcatttc cacgcccgtc tcgaaggttc
     351  gtcgaaggct gaacttcgac agcccataca ccagccgtgc tgctgtcccc
     401  attgcccaag gcataaacag gcgtcgatca tggacctacc ggcccatgta
     451  tcgaaagccc aggatgtaca gaatgttcag aagccctgat gtccctcgtg
     501  gttgtgaggg tccgtgtaag gttcagtcgt acgaacagag ggatgatgtt
     551  aagcacactg gtattgttcg ctgcgttagt gatgtcacac gtggcccggg
     601  tattactcat cgtgtaggaa agagattttg tattaagtct atgtatattc
     651  tgggtaagat ctggatggat gaaaatatca agaagcagaa tcacaccaac
     701  caggtcatgt tttttttagt tcgtgataga aggccctatg gaaccagccc
     751  acaggatttt gggcaggttt ttaacatgtt cgataatgag cccagtactg
     801  ctacggtgaa gaatgatttg cgtgatcgtt atcaagtcct caggaaattc
     851  catgctacgg tagttggtgg accctctggg atgaaagagc aggctttagt
     901  caagaggttt tttagggtta acacgcacgt cgtgtacaat catcaggaag
     951  cagctaaata tgagaatcat actgagaatg ctttgttgtt gtatatggca
    1001  tgtactcatg cctctaaccc tgtgtatgct acgcttaaga tacgcatcta
    1051  tttttatgat gccgttacga attaataaag attgaatttt atttcatgag
    1101  tttccataac ggaaatcgta tttacaagta caacatataa cacatgatca
    1151  actgctctaa ttacattatt gatagaaatt acacctaaat tattcaaata
    1201  cttccaaact tggaacctaa atacccttaa gaaaagacca gtctgaggcc
    1251  gtaaggtcgt ccagaccttg aagttgagaa aacatttgtg aatccccagt
    1301  gccctcctga ggttgtgatt gaatcgtatt tggagtgtga ggatgtcttg
    1351  gttcatgttg aatggcctga tctcgtggtt tgttatcgtg aaatagaggg
    1401  gattgtttat ctcccatata aaaacgccat tctttgcttg aagagcagtg
    1451  atgtgttccc ctgtgcgtga atccatggtt gatgcagtcg atgtggaggt
    1501  agtatgaaca gccgcagtcg aggtctattc gcttacggcg aatggcttta
    1551  gtcttggctc tgcggtggat gaccttgatt ggtacttgag tagagtggcc
    1601  tgtcgagggt gacgaaggtt gcattcttta gtgtccagtt cttgagtgcg
    1651  taattcttcg cctcttctag gaattcttta tatgaggatg ttgggcctgg
    1701  attgcagagg aagatagagg gaattccgcc tttaatttga attggcttcc
    1751  cgtactttgt gttgctttgc cagtccctct gggccccaaa gaattctttc
    1801  cagtgcttta gatagtgcgg gtcgacgtca tcaatgacgt tataccaagc
    1851  atcattagaa taaacctttg gacttaagtc taaatgacca cataagtaat
    1901  tatgtggccc taatgaccta gcccaaacag ttttgccggt acgactatcg
    1951  ccctctacta caatactatt aggcctccac ggccgcgcag cggcacccat
    2001  gacattctca gacacccact cttcaagttc ttctggaact tgagtaaaag
    2051  aagacgaaag aaaaggagaa acataaggag ctggaggctc ttgaaaaatc
    2101  ctatctaaat taggttttaa attatgatat tgaaaaataa attctttagg
    2151  gagtttctcc ctaataatag ccatagcggc ttcagcggaa cctgcattta
    2201  aggcctctgc tgcagcgtcg ttagcatttc gacagcctcc cctagcactt
    2251  cttccgtcga cctggaatac cccccattca agggtgtctc cgtccttgtc
    2301  gatgtaggac ttgacgtcgg agcttgattt agctccctga atgttcggat
    2351  ggaaatgtgt tgacctggtt ggggatacca ggtcgaagaa tctgttattc
    2401  gtgcactggt atttcccctc gaactgcata agcacgtgga gatgaggttc
    2451  cccatttgtg tgcaactctc tgcagacttt gatgaatttt gtatttgttg
    2501  gggttgacag atttagaagt tgctctaacg cttcctcttt agttagggag
    2551  cattttggga aagtgaggaa ataatttttg gaacttattt taaaacgctt
    2601  tggaggagcc atttggtcaa tgtaccccaa ttgaccgctc ttggcatttg
    2651  gtgcctacaa ttggggtaat ggggtacaat atatactcgt acccctaatg
    2701  gcattatggt aatttggtaa agctcttttc actttaattc gaaatttgaa
    2751  ttccgaattt tttttagcgg ccatccgtat aatatt